data_1PIP
#
_entry.id 1PIP
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.398
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 1PIP pdb_00001pip 10.2210/pdb1pip/pdb
WWPDB D_1000175702 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 1993-10-31
2 'Structure model' 1 1 2008-03-24
3 'Structure model' 1 2 2011-07-13
4 'Structure model' 1 3 2012-12-12
5 'Structure model' 1 4 2017-11-29
6 'Structure model' 2 0 2024-04-24
7 'Structure model' 2 1 2024-11-13
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Version format compliance'
2 3 'Structure model' 'Atomic model'
3 3 'Structure model' 'Database references'
4 3 'Structure model' 'Derived calculations'
5 3 'Structure model' 'Non-polymer description'
6 3 'Structure model' 'Structure summary'
7 3 'Structure model' 'Version format compliance'
8 4 'Structure model' Other
9 5 'Structure model' 'Derived calculations'
10 5 'Structure model' Other
11 6 'Structure model' Advisory
12 6 'Structure model' 'Atomic model'
13 6 'Structure model' 'Data collection'
14 6 'Structure model' 'Database references'
15 6 'Structure model' 'Derived calculations'
16 6 'Structure model' 'Non-polymer description'
17 6 'Structure model' 'Polymer sequence'
18 6 'Structure model' 'Source and taxonomy'
19 6 'Structure model' 'Structure summary'
20 7 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 5 'Structure model' pdbx_database_status
2 5 'Structure model' struct_conf
3 5 'Structure model' struct_conf_type
4 6 'Structure model' atom_site
5 6 'Structure model' chem_comp
6 6 'Structure model' chem_comp_atom
7 6 'Structure model' chem_comp_bond
8 6 'Structure model' database_2
9 6 'Structure model' entity
10 6 'Structure model' entity_name_com
11 6 'Structure model' entity_poly
12 6 'Structure model' entity_poly_seq
13 6 'Structure model' entity_src_gen
14 6 'Structure model' pdbx_entity_src_syn
15 6 'Structure model' pdbx_poly_seq_scheme
16 6 'Structure model' pdbx_validate_symm_contact
17 6 'Structure model' struct_conn
18 6 'Structure model' struct_ref
19 6 'Structure model' struct_ref_seq
20 6 'Structure model' struct_ref_seq_dif
21 7 'Structure model' pdbx_entry_details
22 7 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 5 'Structure model' '_pdbx_database_status.process_site'
2 6 'Structure model' '_atom_site.Cartn_x'
3 6 'Structure model' '_atom_site.Cartn_y'
4 6 'Structure model' '_atom_site.Cartn_z'
5 6 'Structure model' '_atom_site.auth_atom_id'
6 6 'Structure model' '_atom_site.auth_comp_id'
7 6 'Structure model' '_atom_site.auth_seq_id'
8 6 'Structure model' '_atom_site.group_PDB'
9 6 'Structure model' '_atom_site.label_atom_id'
10 6 'Structure model' '_atom_site.label_comp_id'
11 6 'Structure model' '_atom_site.label_seq_id'
12 6 'Structure model' '_atom_site.type_symbol'
13 6 'Structure model' '_chem_comp.formula'
14 6 'Structure model' '_chem_comp.formula_weight'
15 6 'Structure model' '_chem_comp.id'
16 6 'Structure model' '_chem_comp.mon_nstd_flag'
17 6 'Structure model' '_chem_comp.name'
18 6 'Structure model' '_chem_comp.pdbx_synonyms'
19 6 'Structure model' '_chem_comp.type'
20 6 'Structure model' '_database_2.pdbx_DOI'
21 6 'Structure model' '_database_2.pdbx_database_accession'
22 6 'Structure model' '_entity.pdbx_description'
23 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code'
24 6 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can'
25 6 'Structure model' '_entity_src_gen.pdbx_beg_seq_num'
26 6 'Structure model' '_entity_src_gen.pdbx_end_seq_num'
27 6 'Structure model' '_entity_src_gen.pdbx_seq_type'
28 6 'Structure model' '_struct_ref.pdbx_align_begin'
29 6 'Structure model' '_struct_ref.pdbx_seq_one_letter_code'
30 6 'Structure model' '_struct_ref_seq.db_align_beg'
31 6 'Structure model' '_struct_ref_seq.pdbx_auth_seq_align_beg'
32 6 'Structure model' '_struct_ref_seq.seq_align_end'
33 6 'Structure model' '_struct_ref_seq_dif.details'
34 7 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.status_code REL
_pdbx_database_status.entry_id 1PIP
_pdbx_database_status.recvd_initial_deposition_date 1992-10-03
_pdbx_database_status.deposit_site ?
_pdbx_database_status.process_site BNL
_pdbx_database_status.SG_entry .
_pdbx_database_status.status_code_sf ?
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Yamamoto, A.' 1
'Tomoo, K.' 2
'Doi, M.' 3
'Ohishi, H.' 4
'Inoue, M.' 5
'Ishida, T.' 6
'Yamamoto, D.' 7
'Tsuboi, S.' 8
'Okamoto, H.' 9
'Okada, Y.' 10
#
_citation.id primary
_citation.title
;Crystal structure of papain-succinyl-Gln-Val-Val-Ala-Ala-p-nitroanilide complex at 1.7-A resolution: noncovalent binding mode of a common sequence of endogenous thiol protease inhibitors.
;
_citation.journal_abbrev Biochemistry
_citation.journal_volume 31
_citation.page_first 11305
_citation.page_last 11309
_citation.year 1992
_citation.journal_id_ASTM BICHAW
_citation.country US
_citation.journal_id_ISSN 0006-2960
_citation.journal_id_CSD 0033
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 1445868
_citation.pdbx_database_id_DOI 10.1021/bi00161a007
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Yamamoto, A.' 1 ?
primary 'Tomoo, K.' 2 ?
primary 'Doi, M.' 3 ?
primary 'Ohishi, H.' 4 ?
primary 'Inoue, M.' 5 ?
primary 'Ishida, T.' 6 ?
primary 'Yamamoto, D.' 7 ?
primary 'Tsuboi, S.' 8 ?
primary 'Okamoto, H.' 9 ?
primary 'Okada, Y.' 10 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man Papain 23449.346 1 3.4.22.2 ? ? ?
2 polymer syn SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE 706.743 1 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'Papaya proteinase I,PPI'
#
loop_
_entity_poly.entity_id
_entity_poly.type
_entity_poly.nstd_linkage
_entity_poly.nstd_monomer
_entity_poly.pdbx_seq_one_letter_code
_entity_poly.pdbx_seq_one_letter_code_can
_entity_poly.pdbx_strand_id
_entity_poly.pdbx_target_identifier
1 'polypeptide(L)' no no
;IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI
HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHA
VAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN
;
;IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI
HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVGPCGNKVDHA
VAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN
;
A ?
2 'polypeptide(L)' no yes '(ZKO)VVAA(NIT)' QVVAAX B ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 ILE n
1 2 PRO n
1 3 GLU n
1 4 TYR n
1 5 VAL n
1 6 ASP n
1 7 TRP n
1 8 ARG n
1 9 GLN n
1 10 LYS n
1 11 GLY n
1 12 ALA n
1 13 VAL n
1 14 THR n
1 15 PRO n
1 16 VAL n
1 17 LYS n
1 18 ASN n
1 19 GLN n
1 20 GLY n
1 21 SER n
1 22 CYS n
1 23 GLY n
1 24 SER n
1 25 CYS n
1 26 TRP n
1 27 ALA n
1 28 PHE n
1 29 SER n
1 30 ALA n
1 31 VAL n
1 32 VAL n
1 33 THR n
1 34 ILE n
1 35 GLU n
1 36 GLY n
1 37 ILE n
1 38 ILE n
1 39 LYS n
1 40 ILE n
1 41 ARG n
1 42 THR n
1 43 GLY n
1 44 ASN n
1 45 LEU n
1 46 ASN n
1 47 GLN n
1 48 TYR n
1 49 SER n
1 50 GLU n
1 51 GLN n
1 52 GLU n
1 53 LEU n
1 54 LEU n
1 55 ASP n
1 56 CYS n
1 57 ASP n
1 58 ARG n
1 59 ARG n
1 60 SER n
1 61 TYR n
1 62 GLY n
1 63 CYS n
1 64 ASN n
1 65 GLY n
1 66 GLY n
1 67 TYR n
1 68 PRO n
1 69 TRP n
1 70 SER n
1 71 ALA n
1 72 LEU n
1 73 GLN n
1 74 LEU n
1 75 VAL n
1 76 ALA n
1 77 GLN n
1 78 TYR n
1 79 GLY n
1 80 ILE n
1 81 HIS n
1 82 TYR n
1 83 ARG n
1 84 ASN n
1 85 THR n
1 86 TYR n
1 87 PRO n
1 88 TYR n
1 89 GLU n
1 90 GLY n
1 91 VAL n
1 92 GLN n
1 93 ARG n
1 94 TYR n
1 95 CYS n
1 96 ARG n
1 97 SER n
1 98 ARG n
1 99 GLU n
1 100 LYS n
1 101 GLY n
1 102 PRO n
1 103 TYR n
1 104 ALA n
1 105 ALA n
1 106 LYS n
1 107 THR n
1 108 ASP n
1 109 GLY n
1 110 VAL n
1 111 ARG n
1 112 GLN n
1 113 VAL n
1 114 GLN n
1 115 PRO n
1 116 TYR n
1 117 ASN n
1 118 GLN n
1 119 GLY n
1 120 ALA n
1 121 LEU n
1 122 LEU n
1 123 TYR n
1 124 SER n
1 125 ILE n
1 126 ALA n
1 127 ASN n
1 128 GLN n
1 129 PRO n
1 130 VAL n
1 131 SER n
1 132 VAL n
1 133 VAL n
1 134 LEU n
1 135 GLN n
1 136 ALA n
1 137 ALA n
1 138 GLY n
1 139 LYS n
1 140 ASP n
1 141 PHE n
1 142 GLN n
1 143 LEU n
1 144 TYR n
1 145 ARG n
1 146 GLY n
1 147 GLY n
1 148 ILE n
1 149 PHE n
1 150 VAL n
1 151 GLY n
1 152 PRO n
1 153 CYS n
1 154 GLY n
1 155 ASN n
1 156 LYS n
1 157 VAL n
1 158 ASP n
1 159 HIS n
1 160 ALA n
1 161 VAL n
1 162 ALA n
1 163 ALA n
1 164 VAL n
1 165 GLY n
1 166 TYR n
1 167 GLY n
1 168 PRO n
1 169 ASN n
1 170 TYR n
1 171 ILE n
1 172 LEU n
1 173 ILE n
1 174 LYS n
1 175 ASN n
1 176 SER n
1 177 TRP n
1 178 GLY n
1 179 THR n
1 180 GLY n
1 181 TRP n
1 182 GLY n
1 183 GLU n
1 184 ASN n
1 185 GLY n
1 186 TYR n
1 187 ILE n
1 188 ARG n
1 189 ILE n
1 190 LYS n
1 191 ARG n
1 192 GLY n
1 193 THR n
1 194 GLY n
1 195 ASN n
1 196 SER n
1 197 TYR n
1 198 GLY n
1 199 VAL n
1 200 CYS n
1 201 GLY n
1 202 LEU n
1 203 TYR n
1 204 THR n
1 205 SER n
1 206 SER n
1 207 PHE n
1 208 TYR n
1 209 PRO n
1 210 VAL n
1 211 LYS n
1 212 ASN n
2 1 ZKO n
2 2 VAL n
2 3 VAL n
2 4 ALA n
2 5 ALA n
2 6 NIT n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type 'Biological sequence'
_entity_src_gen.pdbx_beg_seq_num 1
_entity_src_gen.pdbx_end_seq_num 212
_entity_src_gen.gene_src_common_name papaya
_entity_src_gen.gene_src_genus Carica
_entity_src_gen.pdbx_gene_src_gene ?
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Carica papaya'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 3649
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name ?
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ?
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain ?
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type ?
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name ?
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
_pdbx_entity_src_syn.entity_id 2
_pdbx_entity_src_syn.pdbx_src_id 1
_pdbx_entity_src_syn.pdbx_alt_source_flag sample
_pdbx_entity_src_syn.pdbx_beg_seq_num 1
_pdbx_entity_src_syn.pdbx_end_seq_num 6
_pdbx_entity_src_syn.organism_scientific ?
_pdbx_entity_src_syn.organism_common_name ?
_pdbx_entity_src_syn.ncbi_taxonomy_id ?
_pdbx_entity_src_syn.details ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195
NIT non-polymer . 4-NITROANILINE PARANITROANILINE 'C6 H6 N2 O2' 138.124
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119
TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146
ZKO 'L-peptide linking' n N-SUCCINYL-GLUTAMINE
'5-azanyl-5-oxidanylidene-2-[(4-oxidanyl-4-oxidanylidene-butanoyl)amino]pentanoic acid' 'C9 H14 N2 O6' 246.217
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 ILE 1 1 1 ILE ILE A . n
A 1 2 PRO 2 2 2 PRO PRO A . n
A 1 3 GLU 3 3 3 GLU GLU A . n
A 1 4 TYR 4 4 4 TYR TYR A . n
A 1 5 VAL 5 5 5 VAL VAL A . n
A 1 6 ASP 6 6 6 ASP ASP A . n
A 1 7 TRP 7 7 7 TRP TRP A . n
A 1 8 ARG 8 8 8 ARG ARG A . n
A 1 9 GLN 9 9 9 GLN GLN A . n
A 1 10 LYS 10 10 10 LYS LYS A . n
A 1 11 GLY 11 11 11 GLY GLY A . n
A 1 12 ALA 12 12 12 ALA ALA A . n
A 1 13 VAL 13 13 13 VAL VAL A . n
A 1 14 THR 14 14 14 THR THR A . n
A 1 15 PRO 15 15 15 PRO PRO A . n
A 1 16 VAL 16 16 16 VAL VAL A . n
A 1 17 LYS 17 17 17 LYS LYS A . n
A 1 18 ASN 18 18 18 ASN ASN A . n
A 1 19 GLN 19 19 19 GLN GLN A . n
A 1 20 GLY 20 20 20 GLY GLY A . n
A 1 21 SER 21 21 21 SER SER A . n
A 1 22 CYS 22 22 22 CYS CYS A . n
A 1 23 GLY 23 23 23 GLY GLY A . n
A 1 24 SER 24 24 24 SER SER A . n
A 1 25 CYS 25 25 25 CYS CYS A . n
A 1 26 TRP 26 26 26 TRP TRP A . n
A 1 27 ALA 27 27 27 ALA ALA A . n
A 1 28 PHE 28 28 28 PHE PHE A . n
A 1 29 SER 29 29 29 SER SER A . n
A 1 30 ALA 30 30 30 ALA ALA A . n
A 1 31 VAL 31 31 31 VAL VAL A . n
A 1 32 VAL 32 32 32 VAL VAL A . n
A 1 33 THR 33 33 33 THR THR A . n
A 1 34 ILE 34 34 34 ILE ILE A . n
A 1 35 GLU 35 35 35 GLU GLU A . n
A 1 36 GLY 36 36 36 GLY GLY A . n
A 1 37 ILE 37 37 37 ILE ILE A . n
A 1 38 ILE 38 38 38 ILE ILE A . n
A 1 39 LYS 39 39 39 LYS LYS A . n
A 1 40 ILE 40 40 40 ILE ILE A . n
A 1 41 ARG 41 41 41 ARG ARG A . n
A 1 42 THR 42 42 42 THR THR A . n
A 1 43 GLY 43 43 43 GLY GLY A . n
A 1 44 ASN 44 44 44 ASN ASN A . n
A 1 45 LEU 45 45 45 LEU LEU A . n
A 1 46 ASN 46 46 46 ASN ASN A . n
A 1 47 GLN 47 47 47 GLN GLN A . n
A 1 48 TYR 48 48 48 TYR TYR A . n
A 1 49 SER 49 49 49 SER SER A . n
A 1 50 GLU 50 50 50 GLU GLU A . n
A 1 51 GLN 51 51 51 GLN GLN A . n
A 1 52 GLU 52 52 52 GLU GLU A . n
A 1 53 LEU 53 53 53 LEU LEU A . n
A 1 54 LEU 54 54 54 LEU LEU A . n
A 1 55 ASP 55 55 55 ASP ASP A . n
A 1 56 CYS 56 56 56 CYS CYS A . n
A 1 57 ASP 57 57 57 ASP ASP A . n
A 1 58 ARG 58 58 58 ARG ARG A . n
A 1 59 ARG 59 59 59 ARG ARG A . n
A 1 60 SER 60 60 60 SER SER A . n
A 1 61 TYR 61 61 61 TYR TYR A . n
A 1 62 GLY 62 62 62 GLY GLY A . n
A 1 63 CYS 63 63 63 CYS CYS A . n
A 1 64 ASN 64 64 64 ASN ASN A . n
A 1 65 GLY 65 65 65 GLY GLY A . n
A 1 66 GLY 66 66 66 GLY GLY A . n
A 1 67 TYR 67 67 67 TYR TYR A . n
A 1 68 PRO 68 68 68 PRO PRO A . n
A 1 69 TRP 69 69 69 TRP TRP A . n
A 1 70 SER 70 70 70 SER SER A . n
A 1 71 ALA 71 71 71 ALA ALA A . n
A 1 72 LEU 72 72 72 LEU LEU A . n
A 1 73 GLN 73 73 73 GLN GLN A . n
A 1 74 LEU 74 74 74 LEU LEU A . n
A 1 75 VAL 75 75 75 VAL VAL A . n
A 1 76 ALA 76 76 76 ALA ALA A . n
A 1 77 GLN 77 77 77 GLN GLN A . n
A 1 78 TYR 78 78 78 TYR TYR A . n
A 1 79 GLY 79 79 79 GLY GLY A . n
A 1 80 ILE 80 80 80 ILE ILE A . n
A 1 81 HIS 81 81 81 HIS HIS A . n
A 1 82 TYR 82 82 82 TYR TYR A . n
A 1 83 ARG 83 83 83 ARG ARG A . n
A 1 84 ASN 84 84 84 ASN ASN A . n
A 1 85 THR 85 85 85 THR THR A . n
A 1 86 TYR 86 86 86 TYR TYR A . n
A 1 87 PRO 87 87 87 PRO PRO A . n
A 1 88 TYR 88 88 88 TYR TYR A . n
A 1 89 GLU 89 89 89 GLU GLU A . n
A 1 90 GLY 90 90 90 GLY GLY A . n
A 1 91 VAL 91 91 91 VAL VAL A . n
A 1 92 GLN 92 92 92 GLN GLN A . n
A 1 93 ARG 93 93 93 ARG ARG A . n
A 1 94 TYR 94 94 94 TYR TYR A . n
A 1 95 CYS 95 95 95 CYS CYS A . n
A 1 96 ARG 96 96 96 ARG ARG A . n
A 1 97 SER 97 97 97 SER SER A . n
A 1 98 ARG 98 98 98 ARG ARG A . n
A 1 99 GLU 99 99 99 GLU GLU A . n
A 1 100 LYS 100 100 100 LYS LYS A . n
A 1 101 GLY 101 101 101 GLY GLY A . n
A 1 102 PRO 102 102 102 PRO PRO A . n
A 1 103 TYR 103 103 103 TYR TYR A . n
A 1 104 ALA 104 104 104 ALA ALA A . n
A 1 105 ALA 105 105 105 ALA ALA A . n
A 1 106 LYS 106 106 106 LYS LYS A . n
A 1 107 THR 107 107 107 THR THR A . n
A 1 108 ASP 108 108 108 ASP ASP A . n
A 1 109 GLY 109 109 109 GLY GLY A . n
A 1 110 VAL 110 110 110 VAL VAL A . n
A 1 111 ARG 111 111 111 ARG ARG A . n
A 1 112 GLN 112 112 112 GLN GLN A . n
A 1 113 VAL 113 113 113 VAL VAL A . n
A 1 114 GLN 114 114 114 GLN GLN A . n
A 1 115 PRO 115 115 115 PRO PRO A . n
A 1 116 TYR 116 116 116 TYR TYR A . n
A 1 117 ASN 117 117 117 ASN ASN A . n
A 1 118 GLN 118 118 118 GLN GLN A . n
A 1 119 GLY 119 119 119 GLY GLY A . n
A 1 120 ALA 120 120 120 ALA ALA A . n
A 1 121 LEU 121 121 121 LEU LEU A . n
A 1 122 LEU 122 122 122 LEU LEU A . n
A 1 123 TYR 123 123 123 TYR TYR A . n
A 1 124 SER 124 124 124 SER SER A . n
A 1 125 ILE 125 125 125 ILE ILE A . n
A 1 126 ALA 126 126 126 ALA ALA A . n
A 1 127 ASN 127 127 127 ASN ASN A . n
A 1 128 GLN 128 128 128 GLN GLN A . n
A 1 129 PRO 129 129 129 PRO PRO A . n
A 1 130 VAL 130 130 130 VAL VAL A . n
A 1 131 SER 131 131 131 SER SER A . n
A 1 132 VAL 132 132 132 VAL VAL A . n
A 1 133 VAL 133 133 133 VAL VAL A . n
A 1 134 LEU 134 134 134 LEU LEU A . n
A 1 135 GLN 135 135 135 GLN GLN A . n
A 1 136 ALA 136 136 136 ALA ALA A . n
A 1 137 ALA 137 137 137 ALA ALA A . n
A 1 138 GLY 138 138 138 GLY GLY A . n
A 1 139 LYS 139 139 139 LYS LYS A . n
A 1 140 ASP 140 140 140 ASP ASP A . n
A 1 141 PHE 141 141 141 PHE PHE A . n
A 1 142 GLN 142 142 142 GLN GLN A . n
A 1 143 LEU 143 143 143 LEU LEU A . n
A 1 144 TYR 144 144 144 TYR TYR A . n
A 1 145 ARG 145 145 145 ARG ARG A . n
A 1 146 GLY 146 146 146 GLY GLY A . n
A 1 147 GLY 147 147 147 GLY GLY A . n
A 1 148 ILE 148 148 148 ILE ILE A . n
A 1 149 PHE 149 149 149 PHE PHE A . n
A 1 150 VAL 150 150 150 VAL VAL A . n
A 1 151 GLY 151 151 151 GLY GLY A . n
A 1 152 PRO 152 152 152 PRO PRO A . n
A 1 153 CYS 153 153 153 CYS CYS A . n
A 1 154 GLY 154 154 154 GLY GLY A . n
A 1 155 ASN 155 155 155 ASN ASN A . n
A 1 156 LYS 156 156 156 LYS LYS A . n
A 1 157 VAL 157 157 157 VAL VAL A . n
A 1 158 ASP 158 158 158 ASP ASP A . n
A 1 159 HIS 159 159 159 HIS HIS A . n
A 1 160 ALA 160 160 160 ALA ALA A . n
A 1 161 VAL 161 161 161 VAL VAL A . n
A 1 162 ALA 162 162 162 ALA ALA A . n
A 1 163 ALA 163 163 163 ALA ALA A . n
A 1 164 VAL 164 164 164 VAL VAL A . n
A 1 165 GLY 165 165 165 GLY GLY A . n
A 1 166 TYR 166 166 166 TYR TYR A . n
A 1 167 GLY 167 167 167 GLY GLY A . n
A 1 168 PRO 168 168 168 PRO PRO A . n
A 1 169 ASN 169 169 169 ASN ASN A . n
A 1 170 TYR 170 170 170 TYR TYR A . n
A 1 171 ILE 171 171 171 ILE ILE A . n
A 1 172 LEU 172 172 172 LEU LEU A . n
A 1 173 ILE 173 173 173 ILE ILE A . n
A 1 174 LYS 174 174 174 LYS LYS A . n
A 1 175 ASN 175 175 175 ASN ASN A . n
A 1 176 SER 176 176 176 SER SER A . n
A 1 177 TRP 177 177 177 TRP TRP A . n
A 1 178 GLY 178 178 178 GLY GLY A . n
A 1 179 THR 179 179 179 THR THR A . n
A 1 180 GLY 180 180 180 GLY GLY A . n
A 1 181 TRP 181 181 181 TRP TRP A . n
A 1 182 GLY 182 182 182 GLY GLY A . n
A 1 183 GLU 183 183 183 GLU GLU A . n
A 1 184 ASN 184 184 184 ASN ASN A . n
A 1 185 GLY 185 185 185 GLY GLY A . n
A 1 186 TYR 186 186 186 TYR TYR A . n
A 1 187 ILE 187 187 187 ILE ILE A . n
A 1 188 ARG 188 188 188 ARG ARG A . n
A 1 189 ILE 189 189 189 ILE ILE A . n
A 1 190 LYS 190 190 190 LYS LYS A . n
A 1 191 ARG 191 191 191 ARG ARG A . n
A 1 192 GLY 192 192 192 GLY GLY A . n
A 1 193 THR 193 193 193 THR THR A . n
A 1 194 GLY 194 194 194 GLY GLY A . n
A 1 195 ASN 195 195 195 ASN ASN A . n
A 1 196 SER 196 196 196 SER SER A . n
A 1 197 TYR 197 197 197 TYR TYR A . n
A 1 198 GLY 198 198 198 GLY GLY A . n
A 1 199 VAL 199 199 199 VAL VAL A . n
A 1 200 CYS 200 200 200 CYS CYS A . n
A 1 201 GLY 201 201 201 GLY GLY A . n
A 1 202 LEU 202 202 202 LEU LEU A . n
A 1 203 TYR 203 203 203 TYR TYR A . n
A 1 204 THR 204 204 204 THR THR A . n
A 1 205 SER 205 205 205 SER SER A . n
A 1 206 SER 206 206 206 SER SER A . n
A 1 207 PHE 207 207 207 PHE PHE A . n
A 1 208 TYR 208 208 208 TYR TYR A . n
A 1 209 PRO 209 209 209 PRO PRO A . n
A 1 210 VAL 210 210 210 VAL VAL A . n
A 1 211 LYS 211 211 211 LYS LYS A . n
A 1 212 ASN 212 212 212 ASN ASN A . n
B 2 1 ZKO 1 400 214 ZKO GLN B . n
B 2 2 VAL 2 401 215 VAL VAL B . n
B 2 3 VAL 3 402 216 VAL VAL B . n
B 2 4 ALA 4 403 217 ALA ALA B . n
B 2 5 ALA 5 404 218 ALA ALA B . n
B 2 6 NIT 6 219 219 NIT NIT B . n
#
loop_
_software.name
_software.classification
_software.version
_software.citation_id
_software.pdbx_ordinal
X-PLOR 'model building' . ? 1
X-PLOR refinement . ? 2
X-PLOR phasing . ? 3
#
_cell.entry_id 1PIP
_cell.length_a 43.090
_cell.length_b 102.300
_cell.length_c 49.690
_cell.angle_alpha 90.00
_cell.angle_beta 90.00
_cell.angle_gamma 90.00
_cell.Z_PDB 4
_cell.pdbx_unique_axis ?
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1PIP
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.cell_setting ?
_symmetry.Int_Tables_number 19
_symmetry.space_group_name_Hall ?
#
_exptl.entry_id 1PIP
_exptl.method 'X-RAY DIFFRACTION'
_exptl.crystals_number ?
#
_exptl_crystal.id 1
_exptl_crystal.density_meas ?
_exptl_crystal.density_Matthews 2.27
_exptl_crystal.density_percent_sol 45.72
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_diffrn.id 1
_diffrn.ambient_temp ?
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l ?
_diffrn_radiation.monochromator ?
_diffrn_radiation.pdbx_diffrn_protocol ?
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength .
_diffrn_radiation_wavelength.wt 1.0
#
_refine.entry_id 1PIP
_refine.ls_number_reflns_obs ?
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_sigma_I ?
_refine.pdbx_ls_sigma_F 3.0
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.ls_d_res_low 10.0
_refine.ls_d_res_high 1.7
_refine.ls_percent_reflns_obs ?
_refine.ls_R_factor_obs 0.196
_refine.ls_R_factor_all ?
_refine.ls_R_factor_R_work 0.196
_refine.ls_R_factor_R_free ?
_refine.ls_R_factor_R_free_error ?
_refine.ls_R_factor_R_free_error_details ?
_refine.ls_percent_reflns_R_free ?
_refine.ls_number_reflns_R_free ?
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.occupancy_min ?
_refine.occupancy_max ?
_refine.B_iso_mean ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.solvent_model_details ?
_refine.solvent_model_param_ksol ?
_refine.solvent_model_param_bsol ?
_refine.pdbx_ls_cross_valid_method ?
_refine.details ?
_refine.pdbx_starting_model ?
_refine.pdbx_method_to_determine_struct ?
_refine.pdbx_isotropic_thermal_model ?
_refine.pdbx_stereochemistry_target_values ?
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.pdbx_R_Free_selection_details ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML ?
_refine.overall_SU_B ?
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.ls_redundancy_reflns_obs ?
_refine.pdbx_overall_phase_error ?
_refine.B_iso_min ?
_refine.B_iso_max ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.pdbx_solvent_vdw_probe_radii ?
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.ls_wR_factor_R_free ?
_refine.ls_wR_factor_R_work ?
_refine.overall_FOM_free_R_set ?
_refine.overall_FOM_work_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1705
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 1705
_refine_hist.d_res_high 1.7
_refine_hist.d_res_low 10.0
#
_database_PDB_matrix.entry_id 1PIP
_database_PDB_matrix.origx[1][1] 1.000000
_database_PDB_matrix.origx[1][2] 0.000000
_database_PDB_matrix.origx[1][3] 0.000000
_database_PDB_matrix.origx[2][1] 0.000000
_database_PDB_matrix.origx[2][2] 1.000000
_database_PDB_matrix.origx[2][3] 0.000000
_database_PDB_matrix.origx[3][1] 0.000000
_database_PDB_matrix.origx[3][2] 0.000000
_database_PDB_matrix.origx[3][3] 1.000000
_database_PDB_matrix.origx_vector[1] 0.00000
_database_PDB_matrix.origx_vector[2] 0.00000
_database_PDB_matrix.origx_vector[3] 0.00000
#
_struct.entry_id 1PIP
_struct.title
;CRYSTAL STRUCTURE OF PAPAIN-SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE COMPLEX AT 1.7 ANGSTROMS RESOLUTION: NONCOVALENT BINDING MODE OF A COMMON SEQUENCE OF ENDOGENOUS THIOL PROTEASE INHIBITORS
;
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1PIP
_struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR'
_struct_keywords.text 'THIOL PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
#
loop_
_struct_ref.id
_struct_ref.db_name
_struct_ref.db_code
_struct_ref.pdbx_db_accession
_struct_ref.pdbx_db_isoform
_struct_ref.entity_id
_struct_ref.pdbx_seq_one_letter_code
_struct_ref.pdbx_align_begin
1 UNP PAPA1_CARPA P00784 ? 1
;IPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGI
HYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVDHA
VAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN
;
134
2 PDB 1PIP 1PIP ? 2 ? 1
#
loop_
_struct_ref_seq.align_id
_struct_ref_seq.ref_id
_struct_ref_seq.pdbx_PDB_id_code
_struct_ref_seq.pdbx_strand_id
_struct_ref_seq.seq_align_beg
_struct_ref_seq.pdbx_seq_align_beg_ins_code
_struct_ref_seq.seq_align_end
_struct_ref_seq.pdbx_seq_align_end_ins_code
_struct_ref_seq.pdbx_db_accession
_struct_ref_seq.db_align_beg
_struct_ref_seq.pdbx_db_align_beg_ins_code
_struct_ref_seq.db_align_end
_struct_ref_seq.pdbx_db_align_end_ins_code
_struct_ref_seq.pdbx_auth_seq_align_beg
_struct_ref_seq.pdbx_auth_seq_align_end
1 1 1PIP A 1 ? 212 ? P00784 134 ? 345 ? 1 212
2 2 1PIP B 1 ? 6 ? 1PIP 400 ? 219 ? 400 219
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 1PIP GLN A 47 ? UNP P00784 GLU 180 conflict 47 1
1 1PIP GLN A 118 ? UNP P00784 GLU 251 conflict 118 2
1 1PIP GLN A 135 ? UNP P00784 GLU 268 conflict 135 3
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details dimeric
_pdbx_struct_assembly.oligomeric_count 2
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 L1 SER A 24 ? THR A 42 ? SER A 24 THR A 42 1 'INCLUDING 3/10 REGION' 19
HELX_P HELX_P2 L2 GLU A 50 ? ASP A 57 ? GLU A 50 ASP A 57 1 ? 8
HELX_P HELX_P3 L3 TYR A 67 ? TYR A 78 ? TYR A 67 TYR A 78 1 'INCLUDING 3/10 REGION' 12
HELX_P HELX_P4 R1 ASN A 117 ? ASN A 127 ? ASN A 117 ASN A 127 1 'INCLUDING 3/10 REGION' 11
HELX_P HELX_P5 R2 GLY A 138 ? GLN A 142 ? GLY A 138 GLN A 142 1 'INCLUDING 3/10 REGION' 5
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
disulf1 disulf ? ? A CYS 22 SG ? ? ? 1_555 A CYS 63 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.021 ? ?
disulf2 disulf ? ? A CYS 56 SG ? ? ? 1_555 A CYS 95 SG ? ? A CYS 56 A CYS 95 1_555 ? ? ? ? ? ? ? 2.044 ? ?
disulf3 disulf ? ? A CYS 153 SG ? ? ? 1_555 A CYS 200 SG ? ? A CYS 153 A CYS 200 1_555 ? ? ? ? ? ? ? 2.023 ? ?
covale1 covale both ? B NIT 6 N1 ? ? ? 1_555 B ALA 5 C ? ? B NIT 219 B ALA 404 1_555 ? ? ? ? ? ? ? 1.417 ? ?
covale2 covale both ? B ZKO 1 C ? ? ? 1_555 B VAL 2 N ? ? B ZKO 400 B VAL 401 1_555 ? ? ? ? ? ? ? 1.349 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
disulf ? ?
covale ? ?
#
loop_
_pdbx_modification_feature.ordinal
_pdbx_modification_feature.label_comp_id
_pdbx_modification_feature.label_asym_id
_pdbx_modification_feature.label_seq_id
_pdbx_modification_feature.label_alt_id
_pdbx_modification_feature.modified_residue_label_comp_id
_pdbx_modification_feature.modified_residue_label_asym_id
_pdbx_modification_feature.modified_residue_label_seq_id
_pdbx_modification_feature.modified_residue_label_alt_id
_pdbx_modification_feature.auth_comp_id
_pdbx_modification_feature.auth_asym_id
_pdbx_modification_feature.auth_seq_id
_pdbx_modification_feature.PDB_ins_code
_pdbx_modification_feature.symmetry
_pdbx_modification_feature.modified_residue_auth_comp_id
_pdbx_modification_feature.modified_residue_auth_asym_id
_pdbx_modification_feature.modified_residue_auth_seq_id
_pdbx_modification_feature.modified_residue_PDB_ins_code
_pdbx_modification_feature.modified_residue_symmetry
_pdbx_modification_feature.comp_id_linking_atom
_pdbx_modification_feature.modified_residue_id_linking_atom
_pdbx_modification_feature.modified_residue_id
_pdbx_modification_feature.ref_pcm_id
_pdbx_modification_feature.ref_comp_id
_pdbx_modification_feature.type
_pdbx_modification_feature.category
1 ZKO B 1 ? . . . . ZKO B 400 ? 1_555 . . . . . . . GLN 1 ZKO Succinylation 'Named protein modification'
2 NIT B 6 ? . . . . NIT B 219 ? 1_555 . . . . . . . ? 1 NIT None 'Non-standard residue'
3 CYS A 22 ? CYS A 63 ? CYS A 22 ? 1_555 CYS A 63 ? 1_555 SG SG . . . None 'Disulfide bridge'
4 CYS A 56 ? CYS A 95 ? CYS A 56 ? 1_555 CYS A 95 ? 1_555 SG SG . . . None 'Disulfide bridge'
5 CYS A 153 ? CYS A 200 ? CYS A 153 ? 1_555 CYS A 200 ? 1_555 SG SG . . . None 'Disulfide bridge'
#
_struct_mon_prot_cis.pdbx_id 1
_struct_mon_prot_cis.label_comp_id GLY
_struct_mon_prot_cis.label_seq_id 151
_struct_mon_prot_cis.label_asym_id A
_struct_mon_prot_cis.label_alt_id .
_struct_mon_prot_cis.pdbx_PDB_ins_code ?
_struct_mon_prot_cis.auth_comp_id GLY
_struct_mon_prot_cis.auth_seq_id 151
_struct_mon_prot_cis.auth_asym_id A
_struct_mon_prot_cis.pdbx_label_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_label_seq_id_2 152
_struct_mon_prot_cis.pdbx_label_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_ins_code_2 ?
_struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO
_struct_mon_prot_cis.pdbx_auth_seq_id_2 152
_struct_mon_prot_cis.pdbx_auth_asym_id_2 A
_struct_mon_prot_cis.pdbx_PDB_model_num 1
_struct_mon_prot_cis.pdbx_omega_angle -2.12
#
_struct_sheet.id S1
_struct_sheet.type ?
_struct_sheet.number_strands 7
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
S1 1 2 ? anti-parallel
S1 2 3 ? anti-parallel
S1 3 4 ? anti-parallel
S1 4 5 ? anti-parallel
S1 5 6 ? anti-parallel
S1 6 7 ? anti-parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
S1 1 VAL A 5 ? TRP A 7 ? VAL A 5 TRP A 7
S1 2 ASP A 158 ? GLY A 167 ? ASP A 158 GLY A 167
S1 3 VAL A 130 ? LEU A 134 ? VAL A 130 LEU A 134
S1 4 SER A 206 ? VAL A 210 ? SER A 206 VAL A 210
S1 5 ASP A 108 ? VAL A 113 ? ASP A 108 VAL A 113
S1 6 TYR A 170 ? ASN A 175 ? TYR A 170 ASN A 175
S1 7 GLY A 185 ? ARG A 191 ? GLY A 185 ARG A 191
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
S1 1 2 O VAL A 5 ? O VAL A 5 N TYR A 166 ? N TYR A 166
S1 2 3 O HIS A 159 ? O HIS A 159 N LEU A 134 ? N LEU A 134
S1 3 4 O SER A 131 ? O SER A 131 N PHE A 207 ? N PHE A 207
S1 4 5 O SER A 206 ? O SER A 206 N VAL A 113 ? N VAL A 113
S1 5 6 O GLY A 109 ? O GLY A 109 N LEU A 172 ? N LEU A 172
S1 6 7 O ILE A 171 ? O ILE A 171 N ILE A 189 ? N ILE A 189
#
_struct_site.id AC1
_struct_site.pdbx_evidence_code Software
_struct_site.pdbx_auth_asym_id ?
_struct_site.pdbx_auth_comp_id ?
_struct_site.pdbx_auth_seq_id ?
_struct_site.pdbx_auth_ins_code ?
_struct_site.pdbx_num_residues 8
_struct_site.details 'BINDING SITE FOR CHAIN B OF SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 8 GLN A 73 ? GLN A 73 . ? 2_764 ?
2 AC1 8 VAL A 110 ? VAL A 110 . ? 2_764 ?
3 AC1 8 ALA A 136 ? ALA A 136 . ? 1_555 ?
4 AC1 8 ALA A 137 ? ALA A 137 . ? 1_555 ?
5 AC1 8 GLN A 142 ? GLN A 142 . ? 1_555 ?
6 AC1 8 LYS A 156 ? LYS A 156 . ? 1_555 ?
7 AC1 8 ASP A 158 ? ASP A 158 . ? 1_555 ?
8 AC1 8 TRP A 177 ? TRP A 177 . ? 1_555 ?
#
_pdbx_entry_details.entry_id 1PIP
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.sequence_details
;SEQUENCE ADVISORY NOTICE: DIFFERENCE BETWEEN SWISS-PROT
AND PDB SEQUENCE.
SWISS-PROT ENTRY NAME: PAPA_CARPA
SWISS-PROT RESIDUE PDB SEQRES
NAME NUMBER NAME CHAIN SEQ/INSERT CODE
GLU 47 GLN A 47
GLU 118 GLN A 118
GLU 135 GLN A 135
;
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
loop_
_pdbx_validate_symm_contact.id
_pdbx_validate_symm_contact.PDB_model_num
_pdbx_validate_symm_contact.auth_atom_id_1
_pdbx_validate_symm_contact.auth_asym_id_1
_pdbx_validate_symm_contact.auth_comp_id_1
_pdbx_validate_symm_contact.auth_seq_id_1
_pdbx_validate_symm_contact.PDB_ins_code_1
_pdbx_validate_symm_contact.label_alt_id_1
_pdbx_validate_symm_contact.site_symmetry_1
_pdbx_validate_symm_contact.auth_atom_id_2
_pdbx_validate_symm_contact.auth_asym_id_2
_pdbx_validate_symm_contact.auth_comp_id_2
_pdbx_validate_symm_contact.auth_seq_id_2
_pdbx_validate_symm_contact.PDB_ins_code_2
_pdbx_validate_symm_contact.label_alt_id_2
_pdbx_validate_symm_contact.site_symmetry_2
_pdbx_validate_symm_contact.dist
1 1 CG A GLN 73 ? ? 1_555 O4 B ZKO 400 ? ? 2_765 1.26
2 1 CG A GLN 73 ? ? 1_555 C8 B ZKO 400 ? ? 2_765 2.06
#
loop_
_pdbx_validate_rmsd_bond.id
_pdbx_validate_rmsd_bond.PDB_model_num
_pdbx_validate_rmsd_bond.auth_atom_id_1
_pdbx_validate_rmsd_bond.auth_asym_id_1
_pdbx_validate_rmsd_bond.auth_comp_id_1
_pdbx_validate_rmsd_bond.auth_seq_id_1
_pdbx_validate_rmsd_bond.PDB_ins_code_1
_pdbx_validate_rmsd_bond.label_alt_id_1
_pdbx_validate_rmsd_bond.auth_atom_id_2
_pdbx_validate_rmsd_bond.auth_asym_id_2
_pdbx_validate_rmsd_bond.auth_comp_id_2
_pdbx_validate_rmsd_bond.auth_seq_id_2
_pdbx_validate_rmsd_bond.PDB_ins_code_2
_pdbx_validate_rmsd_bond.label_alt_id_2
_pdbx_validate_rmsd_bond.bond_value
_pdbx_validate_rmsd_bond.bond_target_value
_pdbx_validate_rmsd_bond.bond_deviation
_pdbx_validate_rmsd_bond.bond_standard_deviation
_pdbx_validate_rmsd_bond.linker_flag
1 1 NE2 A HIS 81 ? ? CD2 A HIS 81 ? ? 1.302 1.373 -0.071 0.011 N
2 1 NE2 A HIS 159 ? ? CD2 A HIS 159 ? ? 1.301 1.373 -0.072 0.011 N
#
loop_
_pdbx_validate_rmsd_angle.id
_pdbx_validate_rmsd_angle.PDB_model_num
_pdbx_validate_rmsd_angle.auth_atom_id_1
_pdbx_validate_rmsd_angle.auth_asym_id_1
_pdbx_validate_rmsd_angle.auth_comp_id_1
_pdbx_validate_rmsd_angle.auth_seq_id_1
_pdbx_validate_rmsd_angle.PDB_ins_code_1
_pdbx_validate_rmsd_angle.label_alt_id_1
_pdbx_validate_rmsd_angle.auth_atom_id_2
_pdbx_validate_rmsd_angle.auth_asym_id_2
_pdbx_validate_rmsd_angle.auth_comp_id_2
_pdbx_validate_rmsd_angle.auth_seq_id_2
_pdbx_validate_rmsd_angle.PDB_ins_code_2
_pdbx_validate_rmsd_angle.label_alt_id_2
_pdbx_validate_rmsd_angle.auth_atom_id_3
_pdbx_validate_rmsd_angle.auth_asym_id_3
_pdbx_validate_rmsd_angle.auth_comp_id_3
_pdbx_validate_rmsd_angle.auth_seq_id_3
_pdbx_validate_rmsd_angle.PDB_ins_code_3
_pdbx_validate_rmsd_angle.label_alt_id_3
_pdbx_validate_rmsd_angle.angle_value
_pdbx_validate_rmsd_angle.angle_target_value
_pdbx_validate_rmsd_angle.angle_deviation
_pdbx_validate_rmsd_angle.angle_standard_deviation
_pdbx_validate_rmsd_angle.linker_flag
1 1 CD1 A TRP 7 ? ? CG A TRP 7 ? ? CD2 A TRP 7 ? ? 112.35 106.30 6.05 0.80 N
2 1 CE2 A TRP 7 ? ? CD2 A TRP 7 ? ? CG A TRP 7 ? ? 101.83 107.30 -5.47 0.80 N
3 1 NE A ARG 8 ? ? CZ A ARG 8 ? ? NH2 A ARG 8 ? ? 117.10 120.30 -3.20 0.50 N
4 1 CD1 A TRP 26 ? ? CG A TRP 26 ? ? CD2 A TRP 26 ? ? 111.13 106.30 4.83 0.80 N
5 1 O A CYS 63 ? ? C A CYS 63 ? ? N A ASN 64 ? ? 113.09 122.70 -9.61 1.60 Y
6 1 CA A ASN 64 ? ? CB A ASN 64 ? ? CG A ASN 64 ? ? 128.05 113.40 14.65 2.20 N
7 1 CD1 A TRP 69 ? ? CG A TRP 69 ? ? CD2 A TRP 69 ? ? 112.96 106.30 6.66 0.80 N
8 1 CE2 A TRP 69 ? ? CD2 A TRP 69 ? ? CG A TRP 69 ? ? 101.79 107.30 -5.51 0.80 N
9 1 CA A TYR 94 ? ? CB A TYR 94 ? ? CG A TYR 94 ? ? 126.05 113.40 12.65 1.90 N
10 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH1 A ARG 98 ? ? 124.78 120.30 4.48 0.50 N
11 1 NE A ARG 98 ? ? CZ A ARG 98 ? ? NH2 A ARG 98 ? ? 116.90 120.30 -3.40 0.50 N
12 1 NE A ARG 111 ? ? CZ A ARG 111 ? ? NH2 A ARG 111 ? ? 116.57 120.30 -3.73 0.50 N
13 1 CB A TYR 116 ? ? CG A TYR 116 ? ? CD2 A TYR 116 ? ? 116.75 121.00 -4.25 0.60 N
14 1 N A VAL 132 ? ? CA A VAL 132 ? ? CB A VAL 132 ? ? 98.13 111.50 -13.37 2.20 N
15 1 NE A ARG 145 ? ? CZ A ARG 145 ? ? NH1 A ARG 145 ? ? 123.69 120.30 3.39 0.50 N
16 1 CG1 A VAL 161 ? ? CB A VAL 161 ? ? CG2 A VAL 161 ? ? 120.97 110.90 10.07 1.60 N
17 1 CD1 A TRP 177 ? ? CG A TRP 177 ? ? CD2 A TRP 177 ? ? 111.58 106.30 5.28 0.80 N
18 1 CE2 A TRP 177 ? ? CD2 A TRP 177 ? ? CG A TRP 177 ? ? 102.34 107.30 -4.96 0.80 N
19 1 CA A TRP 177 ? ? C A TRP 177 ? ? N A GLY 178 ? ? 129.81 116.20 13.61 2.00 Y
20 1 O A TRP 177 ? ? C A TRP 177 ? ? N A GLY 178 ? ? 111.82 123.20 -11.38 1.70 Y
21 1 CD1 A TRP 181 ? ? CG A TRP 181 ? ? CD2 A TRP 181 ? ? 111.81 106.30 5.51 0.80 N
22 1 CA B VAL 401 ? ? CB B VAL 401 ? ? CG2 B VAL 401 ? ? 98.60 110.90 -12.30 1.50 N
23 1 N B ALA 403 ? ? CA B ALA 403 ? ? C B ALA 403 ? ? 128.33 111.00 17.33 2.70 N
#
loop_
_pdbx_validate_torsion.id
_pdbx_validate_torsion.PDB_model_num
_pdbx_validate_torsion.auth_comp_id
_pdbx_validate_torsion.auth_asym_id
_pdbx_validate_torsion.auth_seq_id
_pdbx_validate_torsion.PDB_ins_code
_pdbx_validate_torsion.label_alt_id
_pdbx_validate_torsion.phi
_pdbx_validate_torsion.psi
1 1 ASN A 64 ? ? 49.93 21.04
2 1 TYR A 78 ? ? -121.02 -73.69
3 1 TRP A 177 ? ? -105.00 -160.91
4 1 VAL B 401 ? ? 108.56 126.32
5 1 ALA B 403 ? ? -33.78 69.26
#
_pdbx_molecule_features.prd_id PRD_000354
_pdbx_molecule_features.name SUCCINYL-GLN-VAL-VAL-ALA-ALA-P-NITROANILIDE
_pdbx_molecule_features.type Peptide-like
_pdbx_molecule_features.class Inhibitor
_pdbx_molecule_features.details ?
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
ALA N N N N 1
ALA CA C N S 2
ALA C C N N 3
ALA O O N N 4
ALA CB C N N 5
ALA OXT O N N 6
ALA H H N N 7
ALA H2 H N N 8
ALA HA H N N 9
ALA HB1 H N N 10
ALA HB2 H N N 11
ALA HB3 H N N 12
ALA HXT H N N 13
ARG N N N N 14
ARG CA C N S 15
ARG C C N N 16
ARG O O N N 17
ARG CB C N N 18
ARG CG C N N 19
ARG CD C N N 20
ARG NE N N N 21
ARG CZ C N N 22
ARG NH1 N N N 23
ARG NH2 N N N 24
ARG OXT O N N 25
ARG H H N N 26
ARG H2 H N N 27
ARG HA H N N 28
ARG HB2 H N N 29
ARG HB3 H N N 30
ARG HG2 H N N 31
ARG HG3 H N N 32
ARG HD2 H N N 33
ARG HD3 H N N 34
ARG HE H N N 35
ARG HH11 H N N 36
ARG HH12 H N N 37
ARG HH21 H N N 38
ARG HH22 H N N 39
ARG HXT H N N 40
ASN N N N N 41
ASN CA C N S 42
ASN C C N N 43
ASN O O N N 44
ASN CB C N N 45
ASN CG C N N 46
ASN OD1 O N N 47
ASN ND2 N N N 48
ASN OXT O N N 49
ASN H H N N 50
ASN H2 H N N 51
ASN HA H N N 52
ASN HB2 H N N 53
ASN HB3 H N N 54
ASN HD21 H N N 55
ASN HD22 H N N 56
ASN HXT H N N 57
ASP N N N N 58
ASP CA C N S 59
ASP C C N N 60
ASP O O N N 61
ASP CB C N N 62
ASP CG C N N 63
ASP OD1 O N N 64
ASP OD2 O N N 65
ASP OXT O N N 66
ASP H H N N 67
ASP H2 H N N 68
ASP HA H N N 69
ASP HB2 H N N 70
ASP HB3 H N N 71
ASP HD2 H N N 72
ASP HXT H N N 73
CYS N N N N 74
CYS CA C N R 75
CYS C C N N 76
CYS O O N N 77
CYS CB C N N 78
CYS SG S N N 79
CYS OXT O N N 80
CYS H H N N 81
CYS H2 H N N 82
CYS HA H N N 83
CYS HB2 H N N 84
CYS HB3 H N N 85
CYS HG H N N 86
CYS HXT H N N 87
GLN N N N N 88
GLN CA C N S 89
GLN C C N N 90
GLN O O N N 91
GLN CB C N N 92
GLN CG C N N 93
GLN CD C N N 94
GLN OE1 O N N 95
GLN NE2 N N N 96
GLN OXT O N N 97
GLN H H N N 98
GLN H2 H N N 99
GLN HA H N N 100
GLN HB2 H N N 101
GLN HB3 H N N 102
GLN HG2 H N N 103
GLN HG3 H N N 104
GLN HE21 H N N 105
GLN HE22 H N N 106
GLN HXT H N N 107
GLU N N N N 108
GLU CA C N S 109
GLU C C N N 110
GLU O O N N 111
GLU CB C N N 112
GLU CG C N N 113
GLU CD C N N 114
GLU OE1 O N N 115
GLU OE2 O N N 116
GLU OXT O N N 117
GLU H H N N 118
GLU H2 H N N 119
GLU HA H N N 120
GLU HB2 H N N 121
GLU HB3 H N N 122
GLU HG2 H N N 123
GLU HG3 H N N 124
GLU HE2 H N N 125
GLU HXT H N N 126
GLY N N N N 127
GLY CA C N N 128
GLY C C N N 129
GLY O O N N 130
GLY OXT O N N 131
GLY H H N N 132
GLY H2 H N N 133
GLY HA2 H N N 134
GLY HA3 H N N 135
GLY HXT H N N 136
HIS N N N N 137
HIS CA C N S 138
HIS C C N N 139
HIS O O N N 140
HIS CB C N N 141
HIS CG C Y N 142
HIS ND1 N Y N 143
HIS CD2 C Y N 144
HIS CE1 C Y N 145
HIS NE2 N Y N 146
HIS OXT O N N 147
HIS H H N N 148
HIS H2 H N N 149
HIS HA H N N 150
HIS HB2 H N N 151
HIS HB3 H N N 152
HIS HD1 H N N 153
HIS HD2 H N N 154
HIS HE1 H N N 155
HIS HE2 H N N 156
HIS HXT H N N 157
ILE N N N N 158
ILE CA C N S 159
ILE C C N N 160
ILE O O N N 161
ILE CB C N S 162
ILE CG1 C N N 163
ILE CG2 C N N 164
ILE CD1 C N N 165
ILE OXT O N N 166
ILE H H N N 167
ILE H2 H N N 168
ILE HA H N N 169
ILE HB H N N 170
ILE HG12 H N N 171
ILE HG13 H N N 172
ILE HG21 H N N 173
ILE HG22 H N N 174
ILE HG23 H N N 175
ILE HD11 H N N 176
ILE HD12 H N N 177
ILE HD13 H N N 178
ILE HXT H N N 179
LEU N N N N 180
LEU CA C N S 181
LEU C C N N 182
LEU O O N N 183
LEU CB C N N 184
LEU CG C N N 185
LEU CD1 C N N 186
LEU CD2 C N N 187
LEU OXT O N N 188
LEU H H N N 189
LEU H2 H N N 190
LEU HA H N N 191
LEU HB2 H N N 192
LEU HB3 H N N 193
LEU HG H N N 194
LEU HD11 H N N 195
LEU HD12 H N N 196
LEU HD13 H N N 197
LEU HD21 H N N 198
LEU HD22 H N N 199
LEU HD23 H N N 200
LEU HXT H N N 201
LYS N N N N 202
LYS CA C N S 203
LYS C C N N 204
LYS O O N N 205
LYS CB C N N 206
LYS CG C N N 207
LYS CD C N N 208
LYS CE C N N 209
LYS NZ N N N 210
LYS OXT O N N 211
LYS H H N N 212
LYS H2 H N N 213
LYS HA H N N 214
LYS HB2 H N N 215
LYS HB3 H N N 216
LYS HG2 H N N 217
LYS HG3 H N N 218
LYS HD2 H N N 219
LYS HD3 H N N 220
LYS HE2 H N N 221
LYS HE3 H N N 222
LYS HZ1 H N N 223
LYS HZ2 H N N 224
LYS HZ3 H N N 225
LYS HXT H N N 226
NIT N1 N N N 227
NIT C1 C Y N 228
NIT C2 C Y N 229
NIT C3 C Y N 230
NIT C4 C Y N 231
NIT N4 N N N 232
NIT ON1 O N N 233
NIT ON2 O N N 234
NIT C5 C Y N 235
NIT C6 C Y N 236
NIT HN11 H N N 237
NIT HN12 H N N 238
NIT H2 H N N 239
NIT H3 H N N 240
NIT H5 H N N 241
NIT H6 H N N 242
PHE N N N N 243
PHE CA C N S 244
PHE C C N N 245
PHE O O N N 246
PHE CB C N N 247
PHE CG C Y N 248
PHE CD1 C Y N 249
PHE CD2 C Y N 250
PHE CE1 C Y N 251
PHE CE2 C Y N 252
PHE CZ C Y N 253
PHE OXT O N N 254
PHE H H N N 255
PHE H2 H N N 256
PHE HA H N N 257
PHE HB2 H N N 258
PHE HB3 H N N 259
PHE HD1 H N N 260
PHE HD2 H N N 261
PHE HE1 H N N 262
PHE HE2 H N N 263
PHE HZ H N N 264
PHE HXT H N N 265
PRO N N N N 266
PRO CA C N S 267
PRO C C N N 268
PRO O O N N 269
PRO CB C N N 270
PRO CG C N N 271
PRO CD C N N 272
PRO OXT O N N 273
PRO H H N N 274
PRO HA H N N 275
PRO HB2 H N N 276
PRO HB3 H N N 277
PRO HG2 H N N 278
PRO HG3 H N N 279
PRO HD2 H N N 280
PRO HD3 H N N 281
PRO HXT H N N 282
SER N N N N 283
SER CA C N S 284
SER C C N N 285
SER O O N N 286
SER CB C N N 287
SER OG O N N 288
SER OXT O N N 289
SER H H N N 290
SER H2 H N N 291
SER HA H N N 292
SER HB2 H N N 293
SER HB3 H N N 294
SER HG H N N 295
SER HXT H N N 296
THR N N N N 297
THR CA C N S 298
THR C C N N 299
THR O O N N 300
THR CB C N R 301
THR OG1 O N N 302
THR CG2 C N N 303
THR OXT O N N 304
THR H H N N 305
THR H2 H N N 306
THR HA H N N 307
THR HB H N N 308
THR HG1 H N N 309
THR HG21 H N N 310
THR HG22 H N N 311
THR HG23 H N N 312
THR HXT H N N 313
TRP N N N N 314
TRP CA C N S 315
TRP C C N N 316
TRP O O N N 317
TRP CB C N N 318
TRP CG C Y N 319
TRP CD1 C Y N 320
TRP CD2 C Y N 321
TRP NE1 N Y N 322
TRP CE2 C Y N 323
TRP CE3 C Y N 324
TRP CZ2 C Y N 325
TRP CZ3 C Y N 326
TRP CH2 C Y N 327
TRP OXT O N N 328
TRP H H N N 329
TRP H2 H N N 330
TRP HA H N N 331
TRP HB2 H N N 332
TRP HB3 H N N 333
TRP HD1 H N N 334
TRP HE1 H N N 335
TRP HE3 H N N 336
TRP HZ2 H N N 337
TRP HZ3 H N N 338
TRP HH2 H N N 339
TRP HXT H N N 340
TYR N N N N 341
TYR CA C N S 342
TYR C C N N 343
TYR O O N N 344
TYR CB C N N 345
TYR CG C Y N 346
TYR CD1 C Y N 347
TYR CD2 C Y N 348
TYR CE1 C Y N 349
TYR CE2 C Y N 350
TYR CZ C Y N 351
TYR OH O N N 352
TYR OXT O N N 353
TYR H H N N 354
TYR H2 H N N 355
TYR HA H N N 356
TYR HB2 H N N 357
TYR HB3 H N N 358
TYR HD1 H N N 359
TYR HD2 H N N 360
TYR HE1 H N N 361
TYR HE2 H N N 362
TYR HH H N N 363
TYR HXT H N N 364
VAL N N N N 365
VAL CA C N S 366
VAL C C N N 367
VAL O O N N 368
VAL CB C N N 369
VAL CG1 C N N 370
VAL CG2 C N N 371
VAL OXT O N N 372
VAL H H N N 373
VAL H2 H N N 374
VAL HA H N N 375
VAL HB H N N 376
VAL HG11 H N N 377
VAL HG12 H N N 378
VAL HG13 H N N 379
VAL HG21 H N N 380
VAL HG22 H N N 381
VAL HG23 H N N 382
VAL HXT H N N 383
ZKO NE2 N N N 384
ZKO CD C N N 385
ZKO OE1 O N N 386
ZKO CG C N N 387
ZKO CB C N N 388
ZKO CA C N S 389
ZKO N N N N 390
ZKO C5 C N N 391
ZKO O2 O N N 392
ZKO C6 C N N 393
ZKO C7 C N N 394
ZKO C8 C N N 395
ZKO O3 O N N 396
ZKO O4 O N N 397
ZKO C C N N 398
ZKO OXT O N N 399
ZKO O O N N 400
ZKO HE21 H N N 401
ZKO HE22 H N N 402
ZKO HG2 H N N 403
ZKO HG3 H N N 404
ZKO HB2 H N N 405
ZKO HB3 H N N 406
ZKO HA H N N 407
ZKO H H N N 408
ZKO H9 H N N 409
ZKO H10 H N N 410
ZKO H11 H N N 411
ZKO H12 H N N 412
ZKO H13 H N N 413
ZKO HXT H N N 414
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ALA N CA sing N N 1
ALA N H sing N N 2
ALA N H2 sing N N 3
ALA CA C sing N N 4
ALA CA CB sing N N 5
ALA CA HA sing N N 6
ALA C O doub N N 7
ALA C OXT sing N N 8
ALA CB HB1 sing N N 9
ALA CB HB2 sing N N 10
ALA CB HB3 sing N N 11
ALA OXT HXT sing N N 12
ARG N CA sing N N 13
ARG N H sing N N 14
ARG N H2 sing N N 15
ARG CA C sing N N 16
ARG CA CB sing N N 17
ARG CA HA sing N N 18
ARG C O doub N N 19
ARG C OXT sing N N 20
ARG CB CG sing N N 21
ARG CB HB2 sing N N 22
ARG CB HB3 sing N N 23
ARG CG CD sing N N 24
ARG CG HG2 sing N N 25
ARG CG HG3 sing N N 26
ARG CD NE sing N N 27
ARG CD HD2 sing N N 28
ARG CD HD3 sing N N 29
ARG NE CZ sing N N 30
ARG NE HE sing N N 31
ARG CZ NH1 sing N N 32
ARG CZ NH2 doub N N 33
ARG NH1 HH11 sing N N 34
ARG NH1 HH12 sing N N 35
ARG NH2 HH21 sing N N 36
ARG NH2 HH22 sing N N 37
ARG OXT HXT sing N N 38
ASN N CA sing N N 39
ASN N H sing N N 40
ASN N H2 sing N N 41
ASN CA C sing N N 42
ASN CA CB sing N N 43
ASN CA HA sing N N 44
ASN C O doub N N 45
ASN C OXT sing N N 46
ASN CB CG sing N N 47
ASN CB HB2 sing N N 48
ASN CB HB3 sing N N 49
ASN CG OD1 doub N N 50
ASN CG ND2 sing N N 51
ASN ND2 HD21 sing N N 52
ASN ND2 HD22 sing N N 53
ASN OXT HXT sing N N 54
ASP N CA sing N N 55
ASP N H sing N N 56
ASP N H2 sing N N 57
ASP CA C sing N N 58
ASP CA CB sing N N 59
ASP CA HA sing N N 60
ASP C O doub N N 61
ASP C OXT sing N N 62
ASP CB CG sing N N 63
ASP CB HB2 sing N N 64
ASP CB HB3 sing N N 65
ASP CG OD1 doub N N 66
ASP CG OD2 sing N N 67
ASP OD2 HD2 sing N N 68
ASP OXT HXT sing N N 69
CYS N CA sing N N 70
CYS N H sing N N 71
CYS N H2 sing N N 72
CYS CA C sing N N 73
CYS CA CB sing N N 74
CYS CA HA sing N N 75
CYS C O doub N N 76
CYS C OXT sing N N 77
CYS CB SG sing N N 78
CYS CB HB2 sing N N 79
CYS CB HB3 sing N N 80
CYS SG HG sing N N 81
CYS OXT HXT sing N N 82
GLN N CA sing N N 83
GLN N H sing N N 84
GLN N H2 sing N N 85
GLN CA C sing N N 86
GLN CA CB sing N N 87
GLN CA HA sing N N 88
GLN C O doub N N 89
GLN C OXT sing N N 90
GLN CB CG sing N N 91
GLN CB HB2 sing N N 92
GLN CB HB3 sing N N 93
GLN CG CD sing N N 94
GLN CG HG2 sing N N 95
GLN CG HG3 sing N N 96
GLN CD OE1 doub N N 97
GLN CD NE2 sing N N 98
GLN NE2 HE21 sing N N 99
GLN NE2 HE22 sing N N 100
GLN OXT HXT sing N N 101
GLU N CA sing N N 102
GLU N H sing N N 103
GLU N H2 sing N N 104
GLU CA C sing N N 105
GLU CA CB sing N N 106
GLU CA HA sing N N 107
GLU C O doub N N 108
GLU C OXT sing N N 109
GLU CB CG sing N N 110
GLU CB HB2 sing N N 111
GLU CB HB3 sing N N 112
GLU CG CD sing N N 113
GLU CG HG2 sing N N 114
GLU CG HG3 sing N N 115
GLU CD OE1 doub N N 116
GLU CD OE2 sing N N 117
GLU OE2 HE2 sing N N 118
GLU OXT HXT sing N N 119
GLY N CA sing N N 120
GLY N H sing N N 121
GLY N H2 sing N N 122
GLY CA C sing N N 123
GLY CA HA2 sing N N 124
GLY CA HA3 sing N N 125
GLY C O doub N N 126
GLY C OXT sing N N 127
GLY OXT HXT sing N N 128
HIS N CA sing N N 129
HIS N H sing N N 130
HIS N H2 sing N N 131
HIS CA C sing N N 132
HIS CA CB sing N N 133
HIS CA HA sing N N 134
HIS C O doub N N 135
HIS C OXT sing N N 136
HIS CB CG sing N N 137
HIS CB HB2 sing N N 138
HIS CB HB3 sing N N 139
HIS CG ND1 sing Y N 140
HIS CG CD2 doub Y N 141
HIS ND1 CE1 doub Y N 142
HIS ND1 HD1 sing N N 143
HIS CD2 NE2 sing Y N 144
HIS CD2 HD2 sing N N 145
HIS CE1 NE2 sing Y N 146
HIS CE1 HE1 sing N N 147
HIS NE2 HE2 sing N N 148
HIS OXT HXT sing N N 149
ILE N CA sing N N 150
ILE N H sing N N 151
ILE N H2 sing N N 152
ILE CA C sing N N 153
ILE CA CB sing N N 154
ILE CA HA sing N N 155
ILE C O doub N N 156
ILE C OXT sing N N 157
ILE CB CG1 sing N N 158
ILE CB CG2 sing N N 159
ILE CB HB sing N N 160
ILE CG1 CD1 sing N N 161
ILE CG1 HG12 sing N N 162
ILE CG1 HG13 sing N N 163
ILE CG2 HG21 sing N N 164
ILE CG2 HG22 sing N N 165
ILE CG2 HG23 sing N N 166
ILE CD1 HD11 sing N N 167
ILE CD1 HD12 sing N N 168
ILE CD1 HD13 sing N N 169
ILE OXT HXT sing N N 170
LEU N CA sing N N 171
LEU N H sing N N 172
LEU N H2 sing N N 173
LEU CA C sing N N 174
LEU CA CB sing N N 175
LEU CA HA sing N N 176
LEU C O doub N N 177
LEU C OXT sing N N 178
LEU CB CG sing N N 179
LEU CB HB2 sing N N 180
LEU CB HB3 sing N N 181
LEU CG CD1 sing N N 182
LEU CG CD2 sing N N 183
LEU CG HG sing N N 184
LEU CD1 HD11 sing N N 185
LEU CD1 HD12 sing N N 186
LEU CD1 HD13 sing N N 187
LEU CD2 HD21 sing N N 188
LEU CD2 HD22 sing N N 189
LEU CD2 HD23 sing N N 190
LEU OXT HXT sing N N 191
LYS N CA sing N N 192
LYS N H sing N N 193
LYS N H2 sing N N 194
LYS CA C sing N N 195
LYS CA CB sing N N 196
LYS CA HA sing N N 197
LYS C O doub N N 198
LYS C OXT sing N N 199
LYS CB CG sing N N 200
LYS CB HB2 sing N N 201
LYS CB HB3 sing N N 202
LYS CG CD sing N N 203
LYS CG HG2 sing N N 204
LYS CG HG3 sing N N 205
LYS CD CE sing N N 206
LYS CD HD2 sing N N 207
LYS CD HD3 sing N N 208
LYS CE NZ sing N N 209
LYS CE HE2 sing N N 210
LYS CE HE3 sing N N 211
LYS NZ HZ1 sing N N 212
LYS NZ HZ2 sing N N 213
LYS NZ HZ3 sing N N 214
LYS OXT HXT sing N N 215
NIT N1 C1 sing N N 216
NIT N1 HN11 sing N N 217
NIT N1 HN12 sing N N 218
NIT C1 C2 doub Y N 219
NIT C1 C6 sing Y N 220
NIT C2 C3 sing Y N 221
NIT C2 H2 sing N N 222
NIT C3 C4 doub Y N 223
NIT C3 H3 sing N N 224
NIT C4 N4 sing N N 225
NIT C4 C5 sing Y N 226
NIT N4 ON1 sing N N 227
NIT N4 ON2 doub N N 228
NIT C5 C6 doub Y N 229
NIT C5 H5 sing N N 230
NIT C6 H6 sing N N 231
PHE N CA sing N N 232
PHE N H sing N N 233
PHE N H2 sing N N 234
PHE CA C sing N N 235
PHE CA CB sing N N 236
PHE CA HA sing N N 237
PHE C O doub N N 238
PHE C OXT sing N N 239
PHE CB CG sing N N 240
PHE CB HB2 sing N N 241
PHE CB HB3 sing N N 242
PHE CG CD1 doub Y N 243
PHE CG CD2 sing Y N 244
PHE CD1 CE1 sing Y N 245
PHE CD1 HD1 sing N N 246
PHE CD2 CE2 doub Y N 247
PHE CD2 HD2 sing N N 248
PHE CE1 CZ doub Y N 249
PHE CE1 HE1 sing N N 250
PHE CE2 CZ sing Y N 251
PHE CE2 HE2 sing N N 252
PHE CZ HZ sing N N 253
PHE OXT HXT sing N N 254
PRO N CA sing N N 255
PRO N CD sing N N 256
PRO N H sing N N 257
PRO CA C sing N N 258
PRO CA CB sing N N 259
PRO CA HA sing N N 260
PRO C O doub N N 261
PRO C OXT sing N N 262
PRO CB CG sing N N 263
PRO CB HB2 sing N N 264
PRO CB HB3 sing N N 265
PRO CG CD sing N N 266
PRO CG HG2 sing N N 267
PRO CG HG3 sing N N 268
PRO CD HD2 sing N N 269
PRO CD HD3 sing N N 270
PRO OXT HXT sing N N 271
SER N CA sing N N 272
SER N H sing N N 273
SER N H2 sing N N 274
SER CA C sing N N 275
SER CA CB sing N N 276
SER CA HA sing N N 277
SER C O doub N N 278
SER C OXT sing N N 279
SER CB OG sing N N 280
SER CB HB2 sing N N 281
SER CB HB3 sing N N 282
SER OG HG sing N N 283
SER OXT HXT sing N N 284
THR N CA sing N N 285
THR N H sing N N 286
THR N H2 sing N N 287
THR CA C sing N N 288
THR CA CB sing N N 289
THR CA HA sing N N 290
THR C O doub N N 291
THR C OXT sing N N 292
THR CB OG1 sing N N 293
THR CB CG2 sing N N 294
THR CB HB sing N N 295
THR OG1 HG1 sing N N 296
THR CG2 HG21 sing N N 297
THR CG2 HG22 sing N N 298
THR CG2 HG23 sing N N 299
THR OXT HXT sing N N 300
TRP N CA sing N N 301
TRP N H sing N N 302
TRP N H2 sing N N 303
TRP CA C sing N N 304
TRP CA CB sing N N 305
TRP CA HA sing N N 306
TRP C O doub N N 307
TRP C OXT sing N N 308
TRP CB CG sing N N 309
TRP CB HB2 sing N N 310
TRP CB HB3 sing N N 311
TRP CG CD1 doub Y N 312
TRP CG CD2 sing Y N 313
TRP CD1 NE1 sing Y N 314
TRP CD1 HD1 sing N N 315
TRP CD2 CE2 doub Y N 316
TRP CD2 CE3 sing Y N 317
TRP NE1 CE2 sing Y N 318
TRP NE1 HE1 sing N N 319
TRP CE2 CZ2 sing Y N 320
TRP CE3 CZ3 doub Y N 321
TRP CE3 HE3 sing N N 322
TRP CZ2 CH2 doub Y N 323
TRP CZ2 HZ2 sing N N 324
TRP CZ3 CH2 sing Y N 325
TRP CZ3 HZ3 sing N N 326
TRP CH2 HH2 sing N N 327
TRP OXT HXT sing N N 328
TYR N CA sing N N 329
TYR N H sing N N 330
TYR N H2 sing N N 331
TYR CA C sing N N 332
TYR CA CB sing N N 333
TYR CA HA sing N N 334
TYR C O doub N N 335
TYR C OXT sing N N 336
TYR CB CG sing N N 337
TYR CB HB2 sing N N 338
TYR CB HB3 sing N N 339
TYR CG CD1 doub Y N 340
TYR CG CD2 sing Y N 341
TYR CD1 CE1 sing Y N 342
TYR CD1 HD1 sing N N 343
TYR CD2 CE2 doub Y N 344
TYR CD2 HD2 sing N N 345
TYR CE1 CZ doub Y N 346
TYR CE1 HE1 sing N N 347
TYR CE2 CZ sing Y N 348
TYR CE2 HE2 sing N N 349
TYR CZ OH sing N N 350
TYR OH HH sing N N 351
TYR OXT HXT sing N N 352
VAL N CA sing N N 353
VAL N H sing N N 354
VAL N H2 sing N N 355
VAL CA C sing N N 356
VAL CA CB sing N N 357
VAL CA HA sing N N 358
VAL C O doub N N 359
VAL C OXT sing N N 360
VAL CB CG1 sing N N 361
VAL CB CG2 sing N N 362
VAL CB HB sing N N 363
VAL CG1 HG11 sing N N 364
VAL CG1 HG12 sing N N 365
VAL CG1 HG13 sing N N 366
VAL CG2 HG21 sing N N 367
VAL CG2 HG22 sing N N 368
VAL CG2 HG23 sing N N 369
VAL OXT HXT sing N N 370
ZKO NE2 CD sing N N 371
ZKO CD OE1 doub N N 372
ZKO CD CG sing N N 373
ZKO CG CB sing N N 374
ZKO CB CA sing N N 375
ZKO CA N sing N N 376
ZKO N C5 sing N N 377
ZKO C5 O2 doub N N 378
ZKO C5 C6 sing N N 379
ZKO C6 C7 sing N N 380
ZKO C7 C8 sing N N 381
ZKO C8 O3 sing N N 382
ZKO C8 O4 doub N N 383
ZKO CA C sing N N 384
ZKO C OXT sing N N 385
ZKO C O doub N N 386
ZKO NE2 HE21 sing N N 387
ZKO NE2 HE22 sing N N 388
ZKO CG HG2 sing N N 389
ZKO CG HG3 sing N N 390
ZKO CB HB2 sing N N 391
ZKO CB HB3 sing N N 392
ZKO CA HA sing N N 393
ZKO N H sing N N 394
ZKO C6 H9 sing N N 395
ZKO C6 H10 sing N N 396
ZKO C7 H11 sing N N 397
ZKO C7 H12 sing N N 398
ZKO O3 H13 sing N N 399
ZKO OXT HXT sing N N 400
#
_atom_sites.entry_id 1PIP
_atom_sites.fract_transf_matrix[1][1] 0.023207
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.009775
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.020125
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
_atom_sites_footnote.id 1
_atom_sites_footnote.text 'CIS PROLINE - PRO A 152'
#
loop_
_atom_type.symbol
C
N
O
S
#
loop_