HEADER OXIDOREDUCTASE 05-JUN-98 1PJC TITLE L-ALANINE DEHYDROGENASE COMPLEXED WITH NAD COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (L-ALANINE DEHYDROGENASE); COMPND 3 CHAIN: A; COMPND 4 EC: 1.4.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHORMIDIUM LAPIDEUM; SOURCE 3 ORGANISM_TAXID: 32060; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MV1184; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PUC18; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PNAD1; SOURCE 9 EXPRESSION_SYSTEM_GENE: ALADH; SOURCE 10 OTHER_DETAILS: MATSUE HOT SPRINGS KEYWDS OXIDOREDUCTASE, NAD EXPDTA X-RAY DIFFRACTION AUTHOR P.J.BAKER,Y.SAWA,H.SHIBATA,S.E.SEDELNIKOVA,D.W.RICE REVDAT 6 27-DEC-23 1PJC 1 REMARK REVDAT 5 04-OCT-17 1PJC 1 REMARK REVDAT 4 13-JUL-11 1PJC 1 VERSN REVDAT 3 24-FEB-09 1PJC 1 VERSN REVDAT 2 01-APR-03 1PJC 1 JRNL REVDAT 1 15-JUL-99 1PJC 0 JRNL AUTH P.J.BAKER,Y.SAWA,H.SHIBATA,S.E.SEDELNIKOVA,D.W.RICE JRNL TITL ANALYSIS OF THE STRUCTURE AND SUBSTRATE BINDING OF JRNL TITL 2 PHORMIDIUM LAPIDEUM ALANINE DEHYDROGENASE. JRNL REF NAT.STRUCT.BIOL. V. 5 561 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9665169 JRNL DOI 10.1038/817 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.E.SEDELNIKOVA,D.W.RICE,H.SHIBATA,Y.SAWA,P.J.BAKER REMARK 1 TITL CRYSTALLIZATION OF THE ALANINE DEHYDROGENASE FROM PHORMIDIUM REMARK 1 TITL 2 LAPIDEUM REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 54 407 1998 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S0907444997011578 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.SAWA,M.TANI,K.MURATA,H.SHIBATA,H.OCHIAI REMARK 1 TITL PURIFICATION AND CHARACTERIZATION OF ALANINE DEHYDROGENASE REMARK 1 TITL 2 FROM A CYANOBACTERIUM, PHORMIDIUM LAPIDEUM REMARK 1 REF J.BIOCHEM.(TOKYO) V. 116 995 1994 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TNT 5E REMARK 3 AUTHORS : TRONRUD,TEN EYCK,MATTHEWS REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 85.0 REMARK 3 NUMBER OF REFLECTIONS : 31042 REMARK 3 REMARK 3 USING DATA ABOVE SIGMA CUTOFF. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.200 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 USING ALL DATA, NO SIGMA CUTOFF. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.2000 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 5.00 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2715 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 44 REMARK 3 SOLVENT ATOMS : 95 REMARK 3 REMARK 3 WILSON B VALUE (FROM FCALC, A**2) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. RMS WEIGHT COUNT REMARK 3 BOND LENGTHS (A) : 0.017 ; 1.500 ; 2813 REMARK 3 BOND ANGLES (DEGREES) : 1.200 ; 3.000 ; 3818 REMARK 3 TORSION ANGLES (DEGREES) : 17.800; 0.000 ; 1658 REMARK 3 PSEUDOROTATION ANGLES (DEGREES) : NULL ; NULL ; NULL REMARK 3 TRIGONAL CARBON PLANES (A) : 0.009 ; 4.000 ; 67 REMARK 3 GENERAL PLANES (A) : 0.016 ; 9.000 ; 406 REMARK 3 ISOTROPIC THERMAL FACTORS (A**2) : NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS (A) : NULL ; NULL ; NULL REMARK 3 REMARK 3 INCORRECT CHIRAL-CENTERS (COUNT) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : MOEWS AND KRETSINGER REMARK 3 KSOL : 0.85 REMARK 3 BSOL : 334.3 REMARK 3 REMARK 3 RESTRAINT LIBRARIES. REMARK 3 STEREOCHEMISTRY : ENGH AND HUBER REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS : TNT REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PJC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-99. REMARK 100 THE DEPOSITION ID IS D_1000001208. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-97 REMARK 200 TEMPERATURE (KELVIN) : 293.0 REMARK 200 PH : 6.70 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.5 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (AGROVATA, ROTAVATA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 188299 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 18.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: ISOMORPHOUS TO NATIVE REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CRYSTALLISED FROM 0.1M MES PH REMARK 280 6.7 6-10% PEG 20000, SOAKED IN 10MM NAD, PH 6.70 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 61.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 35.24723 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 61.33333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 61.05000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 35.24723 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 61.33333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 61.05000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 35.24723 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 61.33333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 61.05000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 35.24723 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 61.33333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 61.05000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 35.24723 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 61.33333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 61.05000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 35.24723 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 61.33333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 70.49447 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 122.66667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 70.49447 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 122.66667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 70.49447 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 122.66667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 70.49447 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 122.66667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 70.49447 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 122.66667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 70.49447 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 122.66667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 27640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 74890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -106.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 518 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 524 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 593 O HOH A 595 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 184 OE2 GLU A 207 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 88 CB GLN A 88 CG -0.182 REMARK 500 MET A 257 SD MET A 257 CE -0.453 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 358 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 237 33.91 -142.45 REMARK 500 ARG A 243 -159.94 168.12 REMARK 500 ALA A 267 27.16 -76.60 REMARK 500 GLN A 270 0.66 146.10 REMARK 500 GLN A 284 76.12 -172.99 REMARK 500 HIS A 346 -1.15 72.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 500 DBREF 1PJC A 1 361 UNP O52942 O52942_PHOLP 1 361 SEQRES 1 A 361 MET GLU ILE GLY VAL PRO LYS GLU ILE LYS ASN GLN GLU SEQRES 2 A 361 PHE ARG VAL GLY LEU SER PRO SER SER VAL ARG THR LEU SEQRES 3 A 361 VAL GLU ALA GLY HIS THR VAL PHE ILE GLU THR GLN ALA SEQRES 4 A 361 GLY ILE GLY ALA GLY PHE ALA ASP GLN ASP TYR VAL GLN SEQRES 5 A 361 ALA GLY ALA GLN VAL VAL PRO SER ALA LYS ASP ALA TRP SEQRES 6 A 361 SER ARG GLU MET VAL VAL LYS VAL LYS GLU PRO LEU PRO SEQRES 7 A 361 ALA GLU TYR ASP LEU MET GLN LYS ASP GLN LEU LEU PHE SEQRES 8 A 361 THR TYR LEU HIS LEU ALA ALA ALA ARG GLU LEU THR GLU SEQRES 9 A 361 GLN LEU MET ARG VAL GLY LEU THR ALA ILE ALA TYR GLU SEQRES 10 A 361 THR VAL GLU LEU PRO ASN ARG SER LEU PRO LEU LEU THR SEQRES 11 A 361 PRO MET SER ILE ILE ALA GLY ARG LEU SER VAL GLN PHE SEQRES 12 A 361 GLY ALA ARG PHE LEU GLU ARG GLN GLN GLY GLY ARG GLY SEQRES 13 A 361 VAL LEU LEU GLY GLY VAL PRO GLY VAL LYS PRO GLY LYS SEQRES 14 A 361 VAL VAL ILE LEU GLY GLY GLY VAL VAL GLY THR GLU ALA SEQRES 15 A 361 ALA LYS MET ALA VAL GLY LEU GLY ALA GLN VAL GLN ILE SEQRES 16 A 361 PHE ASP ILE ASN VAL GLU ARG LEU SER TYR LEU GLU THR SEQRES 17 A 361 LEU PHE GLY SER ARG VAL GLU LEU LEU TYR SER ASN SER SEQRES 18 A 361 ALA GLU ILE GLU THR ALA VAL ALA GLU ALA ASP LEU LEU SEQRES 19 A 361 ILE GLY ALA VAL LEU VAL PRO GLY ARG ARG ALA PRO ILE SEQRES 20 A 361 LEU VAL PRO ALA SER LEU VAL GLU GLN MET ARG THR GLY SEQRES 21 A 361 SER VAL ILE VAL ASP VAL ALA VAL ASP GLN GLY GLY CYS SEQRES 22 A 361 VAL GLU THR LEU HIS PRO THR SER HIS THR GLN PRO THR SEQRES 23 A 361 TYR GLU VAL PHE GLY VAL VAL HIS TYR GLY VAL PRO ASN SEQRES 24 A 361 MET PRO GLY ALA VAL PRO TRP THR ALA THR GLN ALA LEU SEQRES 25 A 361 ASN ASN SER THR LEU PRO TYR VAL VAL LYS LEU ALA ASN SEQRES 26 A 361 GLN GLY LEU LYS ALA LEU GLU THR ASP ASP ALA LEU ALA SEQRES 27 A 361 LYS GLY LEU ASN VAL GLN ALA HIS ARG LEU VAL HIS PRO SEQRES 28 A 361 ALA VAL GLN GLN VAL PHE PRO ASP LEU ALA HET NAD A 500 44 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 HOH *95(H2 O) HELIX 1 1 PRO A 20 ALA A 29 1 10 HELIX 2 2 ILE A 41 ALA A 43 5 3 HELIX 3 3 ASP A 47 ALA A 53 1 7 HELIX 4 4 ALA A 61 TRP A 65 1 5 HELIX 5 5 PRO A 78 LEU A 83 5 6 HELIX 6 6 LEU A 96 ALA A 98 5 3 HELIX 7 7 ARG A 100 VAL A 109 1 10 HELIX 8 8 TYR A 116 THR A 118 5 3 HELIX 9 9 PRO A 127 PHE A 147 1 21 HELIX 10 10 ARG A 150 GLN A 152 5 3 HELIX 11 11 VAL A 177 GLY A 188 1 12 HELIX 12 12 VAL A 200 ARG A 213 1 14 HELIX 13 13 SER A 221 GLU A 230 1 10 HELIX 14 14 ALA A 251 GLN A 256 1 6 HELIX 15 15 MET A 300 THR A 333 5 34 HELIX 16 16 ASP A 335 GLY A 340 1 6 HELIX 17 17 PRO A 351 GLN A 354 1 4 SHEET 1 A 3 GLU A 2 VAL A 5 0 SHEET 2 A 3 THR A 32 GLU A 36 1 N THR A 32 O ILE A 3 SHEET 3 A 3 GLN A 56 VAL A 58 1 N GLN A 56 O ILE A 35 SHEET 1 B 4 MET A 69 VAL A 71 0 SHEET 2 B 4 LEU A 89 THR A 92 1 N LEU A 89 O VAL A 70 SHEET 3 B 4 THR A 112 ALA A 115 1 N THR A 112 O LEU A 90 SHEET 4 B 4 LEU A 341 GLN A 344 -1 N VAL A 343 O ALA A 113 SHEET 1 C 7 THR A 286 VAL A 289 0 SHEET 2 C 7 VAL A 292 TYR A 295 -1 N HIS A 294 O TYR A 287 SHEET 3 C 7 VAL A 262 ASP A 265 1 N ILE A 263 O VAL A 293 SHEET 4 C 7 LEU A 233 GLY A 236 1 N LEU A 234 O VAL A 262 SHEET 5 C 7 LYS A 169 LEU A 173 1 N VAL A 171 O LEU A 233 SHEET 6 C 7 GLN A 192 ASP A 197 1 N GLN A 192 O VAL A 170 SHEET 7 C 7 GLU A 215 TYR A 218 1 N GLU A 215 O ILE A 195 SITE 1 AC1 21 SER A 133 ALA A 136 GLY A 174 GLY A 176 SITE 2 AC1 21 VAL A 177 VAL A 178 ASP A 197 ILE A 198 SITE 3 AC1 21 SER A 219 ALA A 237 VAL A 238 LEU A 239 SITE 4 AC1 21 VAL A 266 ALA A 267 GLN A 270 ASN A 299 SITE 5 AC1 21 MET A 300 PRO A 301 HOH A 503 HOH A 579 SITE 6 AC1 21 HOH A 592 CRYST1 122.100 122.100 184.000 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008190 0.004729 0.000000 0.00000 SCALE2 0.000000 0.009457 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005435 0.00000 TER 2716 ALA A 361 HETATM 2717 PA NAD A 500 12.299 10.672 21.219 1.00 37.23 P HETATM 2718 O1A NAD A 500 12.566 10.112 22.611 1.00 50.86 O HETATM 2719 O2A NAD A 500 10.848 10.527 20.665 1.00 37.67 O HETATM 2720 O5B NAD A 500 13.381 10.031 20.136 1.00 36.00 O HETATM 2721 C5B NAD A 500 14.794 9.841 20.484 1.00 25.88 C HETATM 2722 C4B NAD A 500 15.173 8.472 20.179 1.00 36.71 C HETATM 2723 O4B NAD A 500 16.614 8.376 20.200 1.00 26.56 O HETATM 2724 C3B NAD A 500 14.742 7.252 21.112 1.00 29.61 C HETATM 2725 O3B NAD A 500 13.931 6.301 20.254 1.00 21.65 O HETATM 2726 C2B NAD A 500 16.041 6.570 21.657 1.00 26.26 C HETATM 2727 O2B NAD A 500 16.032 5.193 21.829 1.00 26.86 O HETATM 2728 C1B NAD A 500 16.957 7.057 20.525 1.00 38.11 C HETATM 2729 N9A NAD A 500 18.327 7.108 20.904 1.00 37.04 N HETATM 2730 C8A NAD A 500 18.938 7.413 22.124 1.00 24.24 C HETATM 2731 N7A NAD A 500 20.210 7.134 22.158 1.00 28.79 N HETATM 2732 C5A NAD A 500 20.500 6.609 20.947 1.00 25.91 C HETATM 2733 C6A NAD A 500 21.754 6.068 20.394 1.00 22.42 C HETATM 2734 N6A NAD A 500 22.921 6.017 21.014 1.00 34.84 N HETATM 2735 N1A NAD A 500 21.613 5.679 19.069 1.00 40.92 N HETATM 2736 C2A NAD A 500 20.538 5.715 18.341 1.00 26.68 C HETATM 2737 N3A NAD A 500 19.359 6.164 18.834 1.00 25.84 N HETATM 2738 C4A NAD A 500 19.366 6.634 20.146 1.00 24.58 C HETATM 2739 O3 NAD A 500 12.719 12.172 21.177 1.00 39.02 O HETATM 2740 PN NAD A 500 12.318 13.257 20.025 1.00 36.74 P HETATM 2741 O1N NAD A 500 12.468 12.436 18.777 1.00 27.20 O HETATM 2742 O2N NAD A 500 11.038 13.866 20.464 1.00 38.10 O HETATM 2743 O5D NAD A 500 13.553 14.325 20.042 1.00 43.41 O HETATM 2744 C5D NAD A 500 14.753 14.143 19.187 1.00 34.36 C HETATM 2745 C4D NAD A 500 15.776 15.136 19.443 1.00 33.27 C HETATM 2746 O4D NAD A 500 15.395 16.382 18.629 1.00 52.46 O HETATM 2747 C3D NAD A 500 15.923 15.746 20.910 1.00 43.12 C HETATM 2748 O3D NAD A 500 17.303 15.867 21.088 1.00 74.88 O HETATM 2749 C2D NAD A 500 15.157 17.137 20.906 1.00 37.19 C HETATM 2750 O2D NAD A 500 15.701 18.050 21.807 1.00100.00 O HETATM 2751 C1D NAD A 500 15.401 17.566 19.413 1.00 52.47 C HETATM 2752 N1N NAD A 500 14.381 18.634 18.750 1.00 53.65 N HETATM 2753 C2N NAD A 500 14.817 19.802 17.989 1.00 47.15 C HETATM 2754 C3N NAD A 500 13.742 20.685 17.610 1.00 94.21 C HETATM 2755 C7N NAD A 500 14.245 22.003 16.766 1.00 50.44 C HETATM 2756 O7N NAD A 500 13.363 22.816 16.371 1.00 37.74 O HETATM 2757 N7N NAD A 500 15.588 22.159 16.531 1.00 51.59 N HETATM 2758 C4N NAD A 500 12.365 20.509 17.886 1.00 37.68 C HETATM 2759 C5N NAD A 500 12.078 19.302 18.643 1.00100.00 C HETATM 2760 C6N NAD A 500 13.061 18.390 19.058 1.00 46.35 C HETATM 2761 O HOH A 501 4.505 19.425 27.947 1.00 19.11 O HETATM 2762 O HOH A 502 1.571 35.405 21.287 1.00 20.72 O HETATM 2763 O HOH A 503 13.857 10.802 17.189 1.00 20.12 O HETATM 2764 O HOH A 504 5.839 21.651 3.353 1.00 20.27 O HETATM 2765 O HOH A 505 14.092 23.777 -2.533 1.00 20.09 O HETATM 2766 O HOH A 506 5.061 17.823 4.836 1.00 18.85 O HETATM 2767 O HOH A 507 -0.429 22.267 7.352 1.00 17.16 O HETATM 2768 O HOH A 508 -1.344 19.161 18.697 1.00 19.97 O HETATM 2769 O HOH A 509 15.187 -2.350 -2.190 1.00 22.41 O HETATM 2770 O HOH A 510 17.749 6.831 -16.345 1.00 23.64 O HETATM 2771 O HOH A 511 -3.489 39.542 13.505 1.00 29.21 O HETATM 2772 O HOH A 512 -0.772 14.556 5.759 1.00 27.31 O HETATM 2773 O HOH A 513 17.886 17.924 -3.503 1.00 22.54 O HETATM 2774 O HOH A 514 8.457 36.864 21.636 1.00 31.04 O HETATM 2775 O HOH A 515 5.339 39.076 23.228 1.00 30.24 O HETATM 2776 O HOH A 516 14.555 26.501 3.658 1.00 30.15 O HETATM 2777 O HOH A 517 11.965 16.002 -4.950 1.00 23.65 O HETATM 2778 O HOH A 518 13.330 0.000 0.000 0.50 41.41 O HETATM 2779 O HOH A 519 23.141 5.824 -10.719 1.00 27.21 O HETATM 2780 O HOH A 520 8.318 37.340 24.173 1.00 28.68 O HETATM 2781 O HOH A 521 -3.869 18.604 25.084 1.00 41.23 O HETATM 2782 O HOH A 522 6.312 10.301 14.971 1.00 32.65 O HETATM 2783 O HOH A 523 6.574 35.171 41.331 1.00 32.17 O HETATM 2784 O HOH A 524 12.868 22.306 0.000 0.50 33.13 O HETATM 2785 O HOH A 525 11.164 26.267 32.395 1.00 25.62 O HETATM 2786 O HOH A 526 29.373 -8.037 13.128 1.00 46.43 O HETATM 2787 O HOH A 527 2.678 36.800 17.311 1.00 29.32 O HETATM 2788 O HOH A 528 -1.323 28.186 23.288 1.00 34.96 O HETATM 2789 O HOH A 529 28.759 10.696 2.393 1.00 29.71 O HETATM 2790 O HOH A 530 16.379 3.747 -8.585 1.00 37.29 O HETATM 2791 O HOH A 531 4.002 42.830 21.566 1.00 35.32 O HETATM 2792 O HOH A 532 26.544 13.195 -0.920 1.00 46.55 O HETATM 2793 O HOH A 533 -6.066 26.270 16.254 1.00 31.65 O HETATM 2794 O HOH A 534 18.076 1.215 2.752 1.00 47.59 O HETATM 2795 O HOH A 535 19.871 41.766 41.180 1.00 48.80 O HETATM 2796 O HOH A 536 7.983 31.621 13.530 1.00 34.76 O HETATM 2797 O HOH A 537 20.929 4.981 -3.089 1.00 60.67 O HETATM 2798 O HOH A 538 -0.069 16.632 22.311 1.00 36.91 O HETATM 2799 O HOH A 539 12.752 29.238 6.319 1.00 45.14 O HETATM 2800 O HOH A 540 -5.305 42.405 10.209 1.00 54.71 O HETATM 2801 O HOH A 541 -5.904 18.470 23.077 1.00 35.11 O HETATM 2802 O HOH A 542 28.632 0.969 19.869 1.00 44.90 O HETATM 2803 O HOH A 543 29.736 20.313 -2.889 1.00 49.83 O HETATM 2804 O HOH A 544 14.263 -4.150 2.975 1.00 28.17 O HETATM 2805 O HOH A 545 30.408 -1.638 17.310 1.00 28.02 O HETATM 2806 O HOH A 546 7.883 18.679 34.566 1.00 40.74 O HETATM 2807 O HOH A 547 7.735 -3.233 1.065 1.00 44.15 O HETATM 2808 O HOH A 548 3.524 7.678 13.231 1.00 38.69 O HETATM 2809 O HOH A 549 13.607 28.440 11.581 1.00 47.06 O HETATM 2810 O HOH A 550 14.059 37.315 28.858 1.00 45.80 O HETATM 2811 O HOH A 551 7.434 -2.890 19.781 1.00 47.75 O HETATM 2812 O HOH A 552 13.526 25.058 32.226 1.00 40.71 O HETATM 2813 O HOH A 553 1.798 -1.150 15.935 1.00 38.77 O HETATM 2814 O HOH A 554 6.998 6.474 -1.339 1.00 41.18 O HETATM 2815 O HOH A 555 25.811 -0.214 21.362 1.00 57.69 O HETATM 2816 O HOH A 556 7.412 -5.559 13.939 1.00 34.38 O HETATM 2817 O HOH A 557 23.258 8.350 -3.412 1.00 38.27 O HETATM 2818 O HOH A 558 6.004 22.346 39.773 1.00 52.10 O HETATM 2819 O HOH A 559 1.899 35.871 14.077 1.00 41.25 O HETATM 2820 O HOH A 560 5.273 42.927 24.306 1.00 36.95 O HETATM 2821 O HOH A 561 21.265 39.703 40.481 1.00 60.02 O HETATM 2822 O HOH A 562 31.007 21.139 -0.435 1.00 53.13 O HETATM 2823 O HOH A 563 -10.850 21.384 29.283 1.00 54.47 O HETATM 2824 O HOH A 564 -2.633 16.148 27.401 1.00 57.37 O HETATM 2825 O HOH A 565 16.701 21.251 20.387 1.00 47.58 O HETATM 2826 O HOH A 566 8.909 38.895 15.839 1.00 55.23 O HETATM 2827 O HOH A 567 25.248 3.909 19.769 1.00 38.40 O HETATM 2828 O HOH A 568 0.946 15.717 19.392 1.00 39.76 O HETATM 2829 O HOH A 569 14.029 7.551 -15.924 1.00 42.33 O HETATM 2830 O HOH A 570 0.440 17.218 17.647 1.00 37.73 O HETATM 2831 O HOH A 571 25.636 -0.423 8.109 1.00 51.96 O HETATM 2832 O HOH A 572 20.153 -1.537 23.724 1.00 35.29 O HETATM 2833 O HOH A 573 5.951 7.755 16.980 1.00 48.32 O HETATM 2834 O HOH A 574 9.057 -8.057 13.563 1.00 42.25 O HETATM 2835 O HOH A 575 17.647 35.343 30.972 1.00 56.61 O HETATM 2836 O HOH A 576 16.436 -2.831 23.191 1.00 39.31 O HETATM 2837 O HOH A 577 -6.653 24.561 18.485 1.00 54.44 O HETATM 2838 O HOH A 578 14.183 -3.929 6.175 1.00 38.76 O HETATM 2839 O HOH A 579 17.615 18.272 24.172 1.00 45.64 O HETATM 2840 O HOH A 580 24.954 29.284 -8.438 1.00 59.31 O HETATM 2841 O HOH A 581 12.277 30.493 45.801 1.00 53.00 O HETATM 2842 O HOH A 582 1.548 33.776 7.441 1.00 58.15 O HETATM 2843 O HOH A 583 11.673 31.860 18.757 1.00 59.15 O HETATM 2844 O HOH A 584 -3.445 32.068 5.978 1.00 52.43 O HETATM 2845 O HOH A 585 2.562 10.929 4.174 1.00 67.55 O HETATM 2846 O HOH A 586 16.874 44.571 36.336 1.00 58.28 O HETATM 2847 O HOH A 587 10.952 -6.453 7.532 1.00 49.47 O HETATM 2848 O HOH A 588 -4.423 16.693 31.510 1.00 57.07 O HETATM 2849 O HOH A 589 13.578 -4.930 9.710 1.00 64.43 O HETATM 2850 O HOH A 590 15.789 30.490 14.845 1.00 67.56 O HETATM 2851 O HOH A 591 5.375 8.745 3.380 1.00 48.70 O HETATM 2852 O HOH A 592 12.022 5.104 21.919 1.00 55.12 O HETATM 2853 O HOH A 593 9.657 25.895 20.647 1.00 55.49 O HETATM 2854 O HOH A 594 11.133 23.568 19.104 1.00 56.64 O HETATM 2855 O HOH A 595 9.949 25.580 18.670 1.00 39.19 O CONECT 2717 2718 2719 2720 2739 CONECT 2718 2717 CONECT 2719 2717 CONECT 2720 2717 2721 CONECT 2721 2720 2722 CONECT 2722 2721 2723 2724 CONECT 2723 2722 2728 CONECT 2724 2722 2725 2726 CONECT 2725 2724 CONECT 2726 2724 2727 2728 CONECT 2727 2726 CONECT 2728 2723 2726 2729 CONECT 2729 2728 2730 2738 CONECT 2730 2729 2731 CONECT 2731 2730 2732 CONECT 2732 2731 2733 2738 CONECT 2733 2732 2734 2735 CONECT 2734 2733 CONECT 2735 2733 2736 CONECT 2736 2735 2737 CONECT 2737 2736 2738 CONECT 2738 2729 2732 2737 CONECT 2739 2717 2740 CONECT 2740 2739 2741 2742 2743 CONECT 2741 2740 CONECT 2742 2740 CONECT 2743 2740 2744 CONECT 2744 2743 2745 CONECT 2745 2744 2746 2747 CONECT 2746 2745 2751 CONECT 2747 2745 2748 2749 CONECT 2748 2747 CONECT 2749 2747 2750 2751 CONECT 2750 2749 CONECT 2751 2746 2749 2752 CONECT 2752 2751 2753 2760 CONECT 2753 2752 2754 CONECT 2754 2753 2755 2758 CONECT 2755 2754 2756 2757 CONECT 2756 2755 CONECT 2757 2755 CONECT 2758 2754 2759 CONECT 2759 2758 2760 CONECT 2760 2752 2759 MASTER 368 0 1 17 14 0 6 6 2854 1 44 28 END