HEADER HYDROLASE 03-JUN-03 1PJU TITLE UNBOUND FORM OF TOMATO INHIBITOR-II COMPND MOL_ID: 1; COMPND 2 MOLECULE: WOUND-INDUCED PROTEINASE INHIBITOR II; COMPND 3 CHAIN: A, B, C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SOLANUM LYCOPERSICUM; SOURCE 3 ORGANISM_TAXID: 4081; SOURCE 4 STRAIN: BONNY BEST KEYWDS PROTEINASE INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR I.H.BARRETTE-NG,K.K.-S.NG,M.M.CHERNEY,G.PEARCE,U.GHANI,C.A.RYAN, AUTHOR 2 M.N.G.JAMES REVDAT 4 16-AUG-23 1PJU 1 REMARK REVDAT 3 13-JUL-11 1PJU 1 VERSN REVDAT 2 24-FEB-09 1PJU 1 VERSN REVDAT 1 16-SEP-03 1PJU 0 JRNL AUTH I.H.BARRETTE-NG,K.K.-S.NG,M.M.CHERNEY,G.PEARCE,U.GHANI, JRNL AUTH 2 C.A.RYAN,M.N.G.JAMES JRNL TITL UNBOUND FORM OF TOMATO INHIBITOR-II REVEALS INTERDOMAIN JRNL TITL 2 FLEXIBILITY AND CONFORMATIONAL VARIABILITY IN THE REACTIVE JRNL TITL 3 SITE LOOPS JRNL REF J.BIOL.CHEM. V. 278 31391 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12788916 JRNL DOI 10.1074/JBC.M304562200 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.53 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 25214 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 73 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 175 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 31.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.96000 REMARK 3 B22 (A**2) : 0.80000 REMARK 3 B33 (A**2) : -2.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.264 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.208 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.147 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.557 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.916 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3588 ; 0.008 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4860 ; 1.116 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 452 ; 6.543 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 460 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2812 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1475 ; 0.192 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 193 ; 0.107 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 47 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.139 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2256 ; 0.324 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3609 ; 0.618 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1332 ; 1.084 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1251 ; 1.742 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 16 REMARK 3 RESIDUE RANGE : A 76 A 116 REMARK 3 ORIGIN FOR THE GROUP (A): 39.1238 0.3604 31.6389 REMARK 3 T TENSOR REMARK 3 T11: 0.1191 T22: 0.0730 REMARK 3 T33: 0.2117 T12: -0.0442 REMARK 3 T13: 0.0215 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.2706 L22: 9.4022 REMARK 3 L33: 5.9712 L12: 0.0520 REMARK 3 L13: -0.4350 L23: -1.0006 REMARK 3 S TENSOR REMARK 3 S11: 0.0934 S12: 0.0225 S13: 0.1161 REMARK 3 S21: 0.0286 S22: -0.0023 S23: -0.8453 REMARK 3 S31: -0.3397 S32: -0.0248 S33: -0.0911 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 17 A 75 REMARK 3 ORIGIN FOR THE GROUP (A): 37.0174 -20.3079 28.5429 REMARK 3 T TENSOR REMARK 3 T11: 0.0193 T22: 0.1561 REMARK 3 T33: 0.1413 T12: 0.0134 REMARK 3 T13: 0.0141 T23: 0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.1580 L22: 3.8233 REMARK 3 L33: 3.5213 L12: 0.4944 REMARK 3 L13: -2.0172 L23: -0.1211 REMARK 3 S TENSOR REMARK 3 S11: -0.1667 S12: -0.0496 S13: -0.2494 REMARK 3 S21: -0.2624 S22: -0.0076 S23: -0.3480 REMARK 3 S31: 0.2567 S32: 0.3574 S33: 0.1743 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 16 REMARK 3 RESIDUE RANGE : B 76 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1813 -27.1903 -9.4067 REMARK 3 T TENSOR REMARK 3 T11: 0.5455 T22: 0.2206 REMARK 3 T33: 0.2370 T12: -0.1494 REMARK 3 T13: 0.0094 T23: 0.0249 REMARK 3 L TENSOR REMARK 3 L11: 3.9121 L22: 6.8743 REMARK 3 L33: 7.8488 L12: 0.4517 REMARK 3 L13: -0.6955 L23: -0.5543 REMARK 3 S TENSOR REMARK 3 S11: -0.1547 S12: -0.0949 S13: -0.1917 REMARK 3 S21: -0.8254 S22: 0.2803 S23: 0.3473 REMARK 3 S31: 0.7554 S32: -0.4013 S33: -0.1256 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 75 REMARK 3 ORIGIN FOR THE GROUP (A): 46.5937 -6.5474 -11.1623 REMARK 3 T TENSOR REMARK 3 T11: 0.1145 T22: 0.2360 REMARK 3 T33: 0.1001 T12: -0.0101 REMARK 3 T13: -0.0373 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.8791 L22: 4.1360 REMARK 3 L33: 9.3829 L12: -0.1757 REMARK 3 L13: -0.3502 L23: -1.3374 REMARK 3 S TENSOR REMARK 3 S11: -0.2054 S12: -0.2689 S13: 0.0874 REMARK 3 S21: -0.0684 S22: 0.2816 S23: 0.2312 REMARK 3 S31: -0.2770 S32: -0.7116 S33: -0.0762 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 16 REMARK 3 RESIDUE RANGE : C 76 C 115 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9682 -30.7727 48.3239 REMARK 3 T TENSOR REMARK 3 T11: 0.1570 T22: 0.1002 REMARK 3 T33: 0.2045 T12: 0.0542 REMARK 3 T13: -0.0641 T23: 0.0338 REMARK 3 L TENSOR REMARK 3 L11: 5.1155 L22: 9.2335 REMARK 3 L33: 5.1158 L12: 0.9473 REMARK 3 L13: 0.7923 L23: -1.1238 REMARK 3 S TENSOR REMARK 3 S11: 0.0551 S12: 0.0006 S13: -0.2907 REMARK 3 S21: 0.3484 S22: -0.1043 S23: -0.2958 REMARK 3 S31: 0.4476 S32: 0.4469 S33: 0.0493 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 17 C 75 REMARK 3 ORIGIN FOR THE GROUP (A): 27.6397 -10.0620 48.4192 REMARK 3 T TENSOR REMARK 3 T11: 0.0363 T22: 0.0773 REMARK 3 T33: 0.0759 T12: -0.0261 REMARK 3 T13: -0.0411 T23: 0.0094 REMARK 3 L TENSOR REMARK 3 L11: 3.3554 L22: 3.5928 REMARK 3 L33: 4.5732 L12: 1.1577 REMARK 3 L13: 1.3043 L23: 1.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.1583 S12: -0.1303 S13: 0.0035 REMARK 3 S21: 0.2893 S22: -0.1290 S23: -0.1817 REMARK 3 S31: -0.2228 S32: 0.0972 S33: -0.0293 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 16 REMARK 3 RESIDUE RANGE : D 76 D 115 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4703 4.2961 7.9938 REMARK 3 T TENSOR REMARK 3 T11: 0.4842 T22: 0.2814 REMARK 3 T33: 0.2587 T12: 0.1938 REMARK 3 T13: 0.1174 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 5.7455 L22: 6.4547 REMARK 3 L33: 8.5466 L12: 0.0293 REMARK 3 L13: -0.8867 L23: 1.2396 REMARK 3 S TENSOR REMARK 3 S11: 0.3536 S12: 0.0854 S13: 0.3626 REMARK 3 S21: 0.5353 S22: 0.0136 S23: 0.4883 REMARK 3 S31: -1.1826 S32: -0.6952 S33: -0.3671 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 17 D 75 REMARK 3 ORIGIN FOR THE GROUP (A): 45.2541 -16.7779 10.5587 REMARK 3 T TENSOR REMARK 3 T11: 0.1754 T22: 0.3209 REMARK 3 T33: 0.1572 T12: 0.0452 REMARK 3 T13: 0.0284 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 3.8173 L22: 3.0255 REMARK 3 L33: 6.1342 L12: 0.2549 REMARK 3 L13: -3.5622 L23: -1.9645 REMARK 3 S TENSOR REMARK 3 S11: -0.3049 S12: 0.2145 S13: -0.2074 REMARK 3 S21: 0.0624 S22: 0.0869 S23: 0.2640 REMARK 3 S31: 0.3802 S32: -0.2857 S33: 0.2179 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PJU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 105 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.30400 REMARK 200 R SYM FOR SHELL (I) : 0.30400 REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1OYV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 10K, AMMONIUM SULFATE, PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 29.34400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 53.30350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 29.34400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 53.30350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE PROTEIN IS LIKELY A MONOMER IN SOLUTION. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -144.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 117.37600 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 1 REMARK 465 ALA A 117 REMARK 465 ASN A 118 REMARK 465 MET A 119 REMARK 465 TYR A 120 REMARK 465 PRO A 121 REMARK 465 VAL A 122 REMARK 465 MET A 123 REMARK 465 LYS B 1 REMARK 465 ALA B 2 REMARK 465 LYS B 116 REMARK 465 ALA B 117 REMARK 465 ASN B 118 REMARK 465 MET B 119 REMARK 465 TYR B 120 REMARK 465 PRO B 121 REMARK 465 VAL B 122 REMARK 465 MET B 123 REMARK 465 LYS C 1 REMARK 465 LYS C 116 REMARK 465 ALA C 117 REMARK 465 ASN C 118 REMARK 465 MET C 119 REMARK 465 TYR C 120 REMARK 465 PRO C 121 REMARK 465 VAL C 122 REMARK 465 MET C 123 REMARK 465 LYS D 1 REMARK 465 LYS D 116 REMARK 465 ALA D 117 REMARK 465 ASN D 118 REMARK 465 MET D 119 REMARK 465 TYR D 120 REMARK 465 PRO D 121 REMARK 465 VAL D 122 REMARK 465 MET D 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP C 103 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP D 53 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP D 103 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 56 74.81 -153.77 REMARK 500 ARG B 56 82.75 -160.18 REMARK 500 ARG C 56 72.03 -164.19 REMARK 500 ARG D 56 72.19 -159.68 REMARK 500 TYR D 83 118.84 -164.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OYV RELATED DB: PDB REMARK 900 TOMATO INHIBITOR-II IN COMPLEX WITH SUBTILISIN CARLSBERG DBREF 1PJU A 1 123 UNP P05119 IP21_LYCES 26 148 DBREF 1PJU B 1 123 UNP P05119 IP21_LYCES 26 148 DBREF 1PJU C 1 123 UNP P05119 IP21_LYCES 26 148 DBREF 1PJU D 1 123 UNP P05119 IP21_LYCES 26 148 SEQRES 1 A 123 LYS ALA CYS THR ARG GLU CYS GLY ASN LEU GLY PHE GLY SEQRES 2 A 123 ILE CYS PRO ARG SER GLU GLY SER PRO LEU ASN PRO ILE SEQRES 3 A 123 CYS ILE ASN CYS CYS SER GLY TYR LYS GLY CYS ASN TYR SEQRES 4 A 123 TYR ASN SER PHE GLY LYS PHE ILE CYS GLU GLY GLU SER SEQRES 5 A 123 ASP PRO LYS ARG PRO ASN ALA CYS THR PHE ASN CYS ASP SEQRES 6 A 123 PRO ASN ILE ALA TYR SER ARG CYS PRO ARG SER GLN GLY SEQRES 7 A 123 LYS SER LEU ILE TYR PRO THR GLY CYS THR THR CYS CYS SEQRES 8 A 123 THR GLY TYR LYS GLY CYS TYR TYR PHE GLY LYS ASP GLY SEQRES 9 A 123 LYS PHE VAL CYS GLU GLY GLU SER ASP GLU PRO LYS ALA SEQRES 10 A 123 ASN MET TYR PRO VAL MET SEQRES 1 B 123 LYS ALA CYS THR ARG GLU CYS GLY ASN LEU GLY PHE GLY SEQRES 2 B 123 ILE CYS PRO ARG SER GLU GLY SER PRO LEU ASN PRO ILE SEQRES 3 B 123 CYS ILE ASN CYS CYS SER GLY TYR LYS GLY CYS ASN TYR SEQRES 4 B 123 TYR ASN SER PHE GLY LYS PHE ILE CYS GLU GLY GLU SER SEQRES 5 B 123 ASP PRO LYS ARG PRO ASN ALA CYS THR PHE ASN CYS ASP SEQRES 6 B 123 PRO ASN ILE ALA TYR SER ARG CYS PRO ARG SER GLN GLY SEQRES 7 B 123 LYS SER LEU ILE TYR PRO THR GLY CYS THR THR CYS CYS SEQRES 8 B 123 THR GLY TYR LYS GLY CYS TYR TYR PHE GLY LYS ASP GLY SEQRES 9 B 123 LYS PHE VAL CYS GLU GLY GLU SER ASP GLU PRO LYS ALA SEQRES 10 B 123 ASN MET TYR PRO VAL MET SEQRES 1 C 123 LYS ALA CYS THR ARG GLU CYS GLY ASN LEU GLY PHE GLY SEQRES 2 C 123 ILE CYS PRO ARG SER GLU GLY SER PRO LEU ASN PRO ILE SEQRES 3 C 123 CYS ILE ASN CYS CYS SER GLY TYR LYS GLY CYS ASN TYR SEQRES 4 C 123 TYR ASN SER PHE GLY LYS PHE ILE CYS GLU GLY GLU SER SEQRES 5 C 123 ASP PRO LYS ARG PRO ASN ALA CYS THR PHE ASN CYS ASP SEQRES 6 C 123 PRO ASN ILE ALA TYR SER ARG CYS PRO ARG SER GLN GLY SEQRES 7 C 123 LYS SER LEU ILE TYR PRO THR GLY CYS THR THR CYS CYS SEQRES 8 C 123 THR GLY TYR LYS GLY CYS TYR TYR PHE GLY LYS ASP GLY SEQRES 9 C 123 LYS PHE VAL CYS GLU GLY GLU SER ASP GLU PRO LYS ALA SEQRES 10 C 123 ASN MET TYR PRO VAL MET SEQRES 1 D 123 LYS ALA CYS THR ARG GLU CYS GLY ASN LEU GLY PHE GLY SEQRES 2 D 123 ILE CYS PRO ARG SER GLU GLY SER PRO LEU ASN PRO ILE SEQRES 3 D 123 CYS ILE ASN CYS CYS SER GLY TYR LYS GLY CYS ASN TYR SEQRES 4 D 123 TYR ASN SER PHE GLY LYS PHE ILE CYS GLU GLY GLU SER SEQRES 5 D 123 ASP PRO LYS ARG PRO ASN ALA CYS THR PHE ASN CYS ASP SEQRES 6 D 123 PRO ASN ILE ALA TYR SER ARG CYS PRO ARG SER GLN GLY SEQRES 7 D 123 LYS SER LEU ILE TYR PRO THR GLY CYS THR THR CYS CYS SEQRES 8 D 123 THR GLY TYR LYS GLY CYS TYR TYR PHE GLY LYS ASP GLY SEQRES 9 D 123 LYS PHE VAL CYS GLU GLY GLU SER ASP GLU PRO LYS ALA SEQRES 10 D 123 ASN MET TYR PRO VAL MET HET SO4 A 502 5 HET SO4 A 506 5 HET SO4 B 501 5 HET SO4 B 508 5 HET SO4 C 503 5 HET SO4 C 504 5 HET SO4 D 505 5 HET SO4 D 507 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 8(O4 S 2-) FORMUL 13 HOH *175(H2 O) SHEET 1 A 4 LEU A 81 ILE A 82 0 SHEET 2 A 4 PHE A 12 ILE A 14 -1 N GLY A 13 O ILE A 82 SHEET 3 A 4 TYR A 98 PHE A 100 -1 O TYR A 98 N ILE A 14 SHEET 4 A 4 PHE A 106 GLU A 109 -1 O CYS A 108 N TYR A 99 SHEET 1 B 3 PHE A 46 GLU A 49 0 SHEET 2 B 3 ASN A 38 TYR A 40 -1 N TYR A 39 O ILE A 47 SHEET 3 B 3 TYR A 70 ARG A 72 -1 O TYR A 70 N TYR A 40 SHEET 1 C 2 ALA A 59 CYS A 60 0 SHEET 2 C 2 CYS C 60 THR C 61 -1 O CYS C 60 N CYS A 60 SHEET 1 D 4 LEU B 81 ILE B 82 0 SHEET 2 D 4 PHE B 12 ILE B 14 -1 N GLY B 13 O ILE B 82 SHEET 3 D 4 TYR B 98 PHE B 100 -1 O PHE B 100 N PHE B 12 SHEET 4 D 4 PHE B 106 GLU B 109 -1 O CYS B 108 N TYR B 99 SHEET 1 E 3 PHE B 46 GLU B 49 0 SHEET 2 E 3 ASN B 38 TYR B 40 -1 N TYR B 39 O ILE B 47 SHEET 3 E 3 TYR B 70 ARG B 72 -1 O TYR B 70 N TYR B 40 SHEET 1 F 2 ALA B 59 CYS B 60 0 SHEET 2 F 2 CYS D 60 THR D 61 -1 O CYS D 60 N CYS B 60 SHEET 1 G 4 LEU C 81 ILE C 82 0 SHEET 2 G 4 PHE C 12 ILE C 14 -1 N GLY C 13 O ILE C 82 SHEET 3 G 4 TYR C 98 PHE C 100 -1 O TYR C 98 N ILE C 14 SHEET 4 G 4 PHE C 106 GLU C 109 -1 O CYS C 108 N TYR C 99 SHEET 1 H 3 PHE C 46 GLU C 49 0 SHEET 2 H 3 ASN C 38 TYR C 40 -1 N TYR C 39 O ILE C 47 SHEET 3 H 3 TYR C 70 ARG C 72 -1 O ARG C 72 N ASN C 38 SHEET 1 I 4 LEU D 81 ILE D 82 0 SHEET 2 I 4 LEU D 10 ILE D 14 -1 N GLY D 13 O ILE D 82 SHEET 3 I 4 TYR D 98 GLY D 101 -1 O PHE D 100 N PHE D 12 SHEET 4 I 4 PHE D 106 GLU D 109 -1 O VAL D 107 N TYR D 99 SHEET 1 J 3 PHE D 46 GLU D 49 0 SHEET 2 J 3 ASN D 38 TYR D 40 -1 N TYR D 39 O ILE D 47 SHEET 3 J 3 TYR D 70 ARG D 72 -1 O ARG D 72 N ASN D 38 SSBOND 1 CYS A 3 CYS A 91 1555 1555 2.04 SSBOND 2 CYS A 7 CYS A 87 1555 1555 2.03 SSBOND 3 CYS A 15 CYS A 97 1555 1555 2.03 SSBOND 4 CYS A 27 CYS A 64 1555 1555 2.03 SSBOND 5 CYS A 30 CYS A 48 1555 1555 2.03 SSBOND 6 CYS A 31 CYS A 60 1555 1555 2.03 SSBOND 7 CYS A 37 CYS A 73 1555 1555 2.03 SSBOND 8 CYS A 90 CYS A 108 1555 1555 2.03 SSBOND 9 CYS B 3 CYS B 91 1555 1555 2.04 SSBOND 10 CYS B 7 CYS B 87 1555 1555 2.04 SSBOND 11 CYS B 15 CYS B 97 1555 1555 2.02 SSBOND 12 CYS B 27 CYS B 64 1555 1555 2.03 SSBOND 13 CYS B 30 CYS B 48 1555 1555 2.03 SSBOND 14 CYS B 31 CYS B 60 1555 1555 2.04 SSBOND 15 CYS B 37 CYS B 73 1555 1555 2.04 SSBOND 16 CYS B 90 CYS B 108 1555 1555 2.02 SSBOND 17 CYS C 3 CYS C 91 1555 1555 2.03 SSBOND 18 CYS C 7 CYS C 87 1555 1555 2.04 SSBOND 19 CYS C 15 CYS C 97 1555 1555 2.01 SSBOND 20 CYS C 27 CYS C 64 1555 1555 2.04 SSBOND 21 CYS C 30 CYS C 48 1555 1555 2.04 SSBOND 22 CYS C 31 CYS C 60 1555 1555 2.02 SSBOND 23 CYS C 37 CYS C 73 1555 1555 2.03 SSBOND 24 CYS C 90 CYS C 108 1555 1555 2.02 SSBOND 25 CYS D 3 CYS D 91 1555 1555 2.03 SSBOND 26 CYS D 7 CYS D 87 1555 1555 2.04 SSBOND 27 CYS D 15 CYS D 97 1555 1555 2.04 SSBOND 28 CYS D 27 CYS D 64 1555 1555 2.04 SSBOND 29 CYS D 30 CYS D 48 1555 1555 2.03 SSBOND 30 CYS D 31 CYS D 60 1555 1555 2.03 SSBOND 31 CYS D 37 CYS D 73 1555 1555 2.03 SSBOND 32 CYS D 90 CYS D 108 1555 1555 2.02 CISPEP 1 TYR A 83 PRO A 84 0 -6.21 CISPEP 2 TYR B 83 PRO B 84 0 -7.14 CISPEP 3 TYR C 83 PRO C 84 0 -1.70 CISPEP 4 TYR D 83 PRO D 84 0 -1.46 SITE 1 AC1 4 ASN B 29 CYS B 30 CYS B 31 ASP B 65 SITE 1 AC2 4 ASN A 29 CYS A 30 CYS A 31 ASP A 65 SITE 1 AC3 4 ASN C 29 CYS C 30 CYS C 31 ASP C 65 SITE 1 AC4 3 ARG C 75 SER C 76 GLN C 77 SITE 1 AC5 5 ARG B 56 ASN D 29 CYS D 30 CYS D 31 SITE 2 AC5 5 ASP D 65 SITE 1 AC6 2 ARG A 75 GLN A 77 SITE 1 AC7 5 ARG A 75 LYS A 95 GLU A 109 ARG D 75 SITE 2 AC7 5 HOH D 531 SITE 1 AC8 4 ARG B 75 TYR B 98 GLU B 109 PRO C 74 CRYST1 58.688 106.607 81.804 90.00 104.12 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017039 0.000000 0.004285 0.00000 SCALE2 0.000000 0.009380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012605 0.00000