data_1PKR # _entry.id 1PKR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PKR WWPDB D_1000175714 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PKR _pdbx_database_status.recvd_initial_deposition_date 1993-08-03 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wu, T.-P.' 1 'Tulinsky, A.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The structure of recombinant plasminogen kringle 1 and the fibrin binding site.' 'Blood Coagulation Fibrinolysis' 5 157 166 1994 BLFIE7 UK 0957-5235 0796 ? 8054447 ? 1 'The Amino Acids of the Recombinant Kringle 1 Domain of Human Plasminogen that Stabilize its Interaction with W-Amino Acids' 'To be Published' ? ? ? ? ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Wu, T.P.' 1 primary 'Padmanabhan, K.P.' 2 primary 'Tulinsky, A.' 3 1 'Hoover, G.J.' 4 1 'Menhart, N.' 5 1 'Martin, A.' 6 1 'Warder, S.' 7 1 'Castellino, F.J.' 8 # _cell.entry_id 1PKR _cell.length_a 58.930 _cell.length_b 58.930 _cell.length_c 54.640 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PKR _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man PLASMINOGEN 9408.268 1 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 2 ? ? ? ? 3 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILE CD ; _entity_poly.pdbx_seq_one_letter_code_can ;SECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQGPWCYTTDPEKRYDYCDILE CD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 GLU n 1 3 CYS n 1 4 LYS n 1 5 THR n 1 6 GLY n 1 7 ASN n 1 8 GLY n 1 9 LYS n 1 10 ASN n 1 11 TYR n 1 12 ARG n 1 13 GLY n 1 14 THR n 1 15 MET n 1 16 SER n 1 17 LYS n 1 18 THR n 1 19 LYS n 1 20 ASN n 1 21 GLY n 1 22 ILE n 1 23 THR n 1 24 CYS n 1 25 GLN n 1 26 LYS n 1 27 TRP n 1 28 SER n 1 29 SER n 1 30 THR n 1 31 SER n 1 32 PRO n 1 33 HIS n 1 34 ARG n 1 35 PRO n 1 36 ARG n 1 37 PHE n 1 38 SER n 1 39 PRO n 1 40 ALA n 1 41 THR n 1 42 HIS n 1 43 PRO n 1 44 SER n 1 45 GLU n 1 46 GLY n 1 47 LEU n 1 48 GLU n 1 49 GLU n 1 50 ASN n 1 51 TYR n 1 52 CYS n 1 53 ARG n 1 54 ASN n 1 55 PRO n 1 56 ASP n 1 57 ASN n 1 58 ASP n 1 59 PRO n 1 60 GLN n 1 61 GLY n 1 62 PRO n 1 63 TRP n 1 64 CYS n 1 65 TYR n 1 66 THR n 1 67 THR n 1 68 ASP n 1 69 PRO n 1 70 GLU n 1 71 LYS n 1 72 ARG n 1 73 TYR n 1 74 ASP n 1 75 TYR n 1 76 CYS n 1 77 ASP n 1 78 ILE n 1 79 LEU n 1 80 GLU n 1 81 CYS n 1 82 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name ? _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code PLMN_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00747 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGASLFSVTKKQLGAGSIEECAAKCEEDEEFTCRAFQYHSKEQQCVIMAENR KSSIIIRMRDVVLFEKKVYLSECKTGNGKNYRGTMSKTKNGITCQKWSSTSPHRPRFSPATHPSEGLEENYCRNPDNDPQ GPWCYTTDPEKRYDYCDILECEEECMHCSGENYDGKISKTMSGLECQAWDSQSPHAHGYIPSKFPNKNLKKNYCRNPDRE LRPWCFTTDPNKRWELCDIPRCTTPPPSSGPTYQCLKGTGENYRGNVAVTVSGHTCQHWSAQTPHTHNRTPENFPCKNLD ENYCRNPDGKRAPWCHTTNSQVRWEYCKIPSCDSSPVSTEQLAPTAPPELTPVVQDCYHGDGQSYRGTSSTTTTGKKCQS WSSMTPHRHQKTPENYPNAGLTMNYCRNPDADKGPWCFTTDPSVRWEYCNLKKCSGTEASVVAPPPVVLLPDVETPSEED CMFGNGKGYRGKRATTVTGTPCQDWAAQEPHRHSIFTPETNPRAGLEKNYCRNPDGDVGGPWCYTTNPRKLYDYCDVPQC AAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAH QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGTFGAGLLKEAQ LPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFV TWIEGVMRNN ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PKR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 81 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00747 _struct_ref_seq.db_align_beg 101 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 181 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg -1 _struct_ref_seq.pdbx_auth_seq_align_end 80 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 # _exptl.entry_id 1PKR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.17 _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1PKR _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 2.48 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.159 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 642 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 715 _refine_hist.d_res_high 2.48 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.2 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_d 6.0 ? ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d ? ? ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? p_plane_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr ? ? ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1PKR _struct.title 'THE STRUCTURE OF RECOMBINANT PLASMINOGEN KRINGLE 1 AND THE FIBRIN BINDING SITE' _struct.pdbx_descriptor 'PLASMINOGEN (KRINGLE 1 DOMAIN)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PKR _struct_keywords.pdbx_keywords PLASMINOGEN _struct_keywords.text PLASMINOGEN # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id HIS _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 42 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id GLY _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 46 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id HIS _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 41 _struct_conf.end_auth_comp_id GLY _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 45 _struct_conf.pdbx_PDB_helix_class 5 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 3 SG ? ? ? 1_555 A CYS 81 SG ? ? A CYS 1 A CYS 80 1_555 ? ? ? ? ? ? ? 2.016 ? disulf2 disulf ? ? A CYS 24 SG ? ? ? 1_555 A CYS 64 SG ? ? A CYS 22 A CYS 63 1_555 ? ? ? ? ? ? ? 2.042 ? disulf3 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 76 SG ? ? A CYS 51 A CYS 75 1_555 ? ? ? ? ? ? ? 2.036 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 31 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 29 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 32 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 30 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 1.90 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 2 ? B2 ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B2 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 SER A 16 ? THR A 18 ? SER A 14 THR A 16 B1 2 ILE A 22 ? CYS A 24 ? ILE A 20 CYS A 22 B2 1 GLN A 25 ? TRP A 27 ? GLN A 23 TRP A 25 B2 2 GLU A 49 ? TYR A 51 ? GLU A 48 TYR A 50 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 90' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE CL A 91' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 ARG A 34 ? ARG A 32 . ? 1_555 ? 2 AC1 2 ARG A 72 ? ARG A 71 . ? 1_555 ? 3 AC2 2 GLY A 21 ? GLY A 19 . ? 4_555 ? 4 AC2 2 PHE A 37 ? PHE A 35 . ? 1_555 ? # _database_PDB_matrix.entry_id 1PKR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PKR _atom_sites.fract_transf_matrix[1][1] 0.016969 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016969 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018302 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # _atom_sites_footnote.id 1 _atom_sites_footnote.text 'CIS PROLINE - PRO 30' # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -1 ? ? ? A . n A 1 2 GLU 2 0 0 GLU GLU A . n A 1 3 CYS 3 1 1 CYS CYS A . n A 1 4 LYS 4 2 2 LYS LYS A . n A 1 5 THR 5 3 3 THR THR A . n A 1 6 GLY 6 4 4 GLY GLY A . n A 1 7 ASN 7 5 5 ASN ASN A . n A 1 8 GLY 8 6 6 GLY GLY A . n A 1 9 LYS 9 7 7 LYS LYS A . n A 1 10 ASN 10 8 8 ASN ASN A . n A 1 11 TYR 11 9 9 TYR TYR A . n A 1 12 ARG 12 10 10 ARG ARG A . n A 1 13 GLY 13 11 11 GLY GLY A . n A 1 14 THR 14 12 12 THR THR A . n A 1 15 MET 15 13 13 MET MET A . n A 1 16 SER 16 14 14 SER SER A . n A 1 17 LYS 17 15 15 LYS LYS A . n A 1 18 THR 18 16 16 THR THR A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 ASN 20 18 18 ASN ASN A . n A 1 21 GLY 21 19 19 GLY GLY A . n A 1 22 ILE 22 20 20 ILE ILE A . n A 1 23 THR 23 21 21 THR THR A . n A 1 24 CYS 24 22 22 CYS CYS A . n A 1 25 GLN 25 23 23 GLN GLN A . n A 1 26 LYS 26 24 24 LYS LYS A . n A 1 27 TRP 27 25 25 TRP TRP A . n A 1 28 SER 28 26 26 SER SER A . n A 1 29 SER 29 27 27 SER SER A . n A 1 30 THR 30 28 28 THR THR A . n A 1 31 SER 31 29 29 SER SER A . n A 1 32 PRO 32 30 30 PRO PRO A . n A 1 33 HIS 33 31 31 HIS HIS A . n A 1 34 ARG 34 32 32 ARG ARG A . n A 1 35 PRO 35 33 33 PRO PRO A . n A 1 36 ARG 36 34 34 ARG ARG A . n A 1 37 PHE 37 35 35 PHE PHE A . n A 1 38 SER 38 37 37 SER SER A . n A 1 39 PRO 39 38 38 PRO PRO A . n A 1 40 ALA 40 39 39 ALA ALA A . n A 1 41 THR 41 40 40 THR THR A . n A 1 42 HIS 42 41 41 HIS HIS A . n A 1 43 PRO 43 42 42 PRO PRO A . n A 1 44 SER 44 43 43 SER SER A . n A 1 45 GLU 45 44 44 GLU GLU A . n A 1 46 GLY 46 45 45 GLY GLY A . n A 1 47 LEU 47 46 46 LEU LEU A . n A 1 48 GLU 48 47 47 GLU GLU A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ASN 50 49 49 ASN ASN A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 CYS 52 51 51 CYS CYS A . n A 1 53 ARG 53 52 52 ARG ARG A . n A 1 54 ASN 54 53 53 ASN ASN A . n A 1 55 PRO 55 54 54 PRO PRO A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 ASN 57 56 56 ASN ASN A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 PRO 59 58 58 PRO PRO A . n A 1 60 GLN 60 59 59 GLN GLN A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 PRO 62 61 61 PRO PRO A . n A 1 63 TRP 63 62 62 TRP TRP A . n A 1 64 CYS 64 63 63 CYS CYS A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 THR 66 65 65 THR THR A . n A 1 67 THR 67 66 66 THR THR A . n A 1 68 ASP 68 67 67 ASP ASP A . n A 1 69 PRO 69 68 68 PRO PRO A . n A 1 70 GLU 70 69 69 GLU GLU A . n A 1 71 LYS 71 70 70 LYS LYS A . n A 1 72 ARG 72 71 71 ARG ARG A . n A 1 73 TYR 73 72 72 TYR TYR A . n A 1 74 ASP 74 73 73 ASP ASP A . n A 1 75 TYR 75 74 74 TYR TYR A . n A 1 76 CYS 76 75 75 CYS CYS A . n A 1 77 ASP 77 76 76 ASP ASP A . n A 1 78 ILE 78 77 77 ILE ILE A . n A 1 79 LEU 79 78 78 LEU LEU A . n A 1 80 GLU 80 79 79 GLU GLU A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 ASP 82 81 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL 1 90 90 CL CL A . C 2 CL 1 91 91 CL CL A . D 3 HOH 1 101 101 HOH HOH A . D 3 HOH 2 102 102 HOH HOH A . D 3 HOH 3 105 105 HOH HOH A . D 3 HOH 4 106 106 HOH HOH A . D 3 HOH 5 107 107 HOH HOH A . D 3 HOH 6 108 108 HOH HOH A . D 3 HOH 7 110 110 HOH HOH A . D 3 HOH 8 113 113 HOH HOH A . D 3 HOH 9 114 114 HOH HOH A . D 3 HOH 10 115 115 HOH HOH A . D 3 HOH 11 116 116 HOH HOH A . D 3 HOH 12 118 118 HOH HOH A . D 3 HOH 13 120 120 HOH HOH A . D 3 HOH 14 121 121 HOH HOH A . D 3 HOH 15 122 122 HOH HOH A . D 3 HOH 16 123 123 HOH HOH A . D 3 HOH 17 126 126 HOH HOH A . D 3 HOH 18 128 128 HOH HOH A . D 3 HOH 19 129 129 HOH HOH A . D 3 HOH 20 130 130 HOH HOH A . D 3 HOH 21 132 132 HOH HOH A . D 3 HOH 22 133 133 HOH HOH A . D 3 HOH 23 202 202 HOH HOH A . D 3 HOH 24 203 203 HOH HOH A . D 3 HOH 25 204 204 HOH HOH A . D 3 HOH 26 206 206 HOH HOH A . D 3 HOH 27 207 207 HOH HOH A . D 3 HOH 28 208 208 HOH HOH A . D 3 HOH 29 213 213 HOH HOH A . D 3 HOH 30 216 216 HOH HOH A . D 3 HOH 31 217 217 HOH HOH A . D 3 HOH 32 220 220 HOH HOH A . D 3 HOH 33 221 221 HOH HOH A . D 3 HOH 34 223 223 HOH HOH A . D 3 HOH 35 224 224 HOH HOH A . D 3 HOH 36 315 315 HOH HOH A . D 3 HOH 37 322 322 HOH HOH A . D 3 HOH 38 334 334 HOH HOH A . D 3 HOH 39 350 350 HOH HOH A . D 3 HOH 40 365 365 HOH HOH A . D 3 HOH 41 402 402 HOH HOH A . D 3 HOH 42 405 405 HOH HOH A . D 3 HOH 43 408 408 HOH HOH A . D 3 HOH 44 411 411 HOH HOH A . D 3 HOH 45 416 416 HOH HOH A . D 3 HOH 46 420 420 HOH HOH A . D 3 HOH 47 425 425 HOH HOH A . D 3 HOH 48 426 426 HOH HOH A . D 3 HOH 49 428 428 HOH HOH A . D 3 HOH 50 431 431 HOH HOH A . D 3 HOH 51 433 433 HOH HOH A . D 3 HOH 52 434 434 HOH HOH A . D 3 HOH 53 439 439 HOH HOH A . D 3 HOH 54 446 446 HOH HOH A . D 3 HOH 55 505 505 HOH HOH A . D 3 HOH 56 521 521 HOH HOH A . D 3 HOH 57 522 522 HOH HOH A . D 3 HOH 58 527 527 HOH HOH A . D 3 HOH 59 528 528 HOH HOH A . D 3 HOH 60 529 529 HOH HOH A . D 3 HOH 61 608 608 HOH HOH A . D 3 HOH 62 609 609 HOH HOH A . D 3 HOH 63 610 610 HOH HOH A . D 3 HOH 64 618 618 HOH HOH A . D 3 HOH 65 625 625 HOH HOH A . D 3 HOH 66 631 631 HOH HOH A . D 3 HOH 67 660 660 HOH HOH A . D 3 HOH 68 702 702 HOH HOH A . D 3 HOH 69 703 703 HOH HOH A . D 3 HOH 70 707 707 HOH HOH A . D 3 HOH 71 708 708 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-11-29 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Derived calculations' 4 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_status 2 4 'Structure model' struct_conf 3 4 'Structure model' struct_conf_type # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 4 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_pdbx_database_status.process_site' # _software.name PROLSQ _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 N _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 0 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 522 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N A GLU 0 ? ? CA A GLU 0 ? ? CB A GLU 0 ? ? 122.42 110.60 11.82 1.80 N 2 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH1 A ARG 10 ? ? 128.41 120.30 8.11 0.50 N 3 1 NE A ARG 10 ? ? CZ A ARG 10 ? ? NH2 A ARG 10 ? ? 111.80 120.30 -8.50 0.50 N 4 1 CD A ARG 32 ? ? NE A ARG 32 ? ? CZ A ARG 32 ? ? 143.18 123.60 19.58 1.40 N 5 1 NE A ARG 32 ? ? CZ A ARG 32 ? ? NH1 A ARG 32 ? ? 127.21 120.30 6.91 0.50 N 6 1 NE A ARG 34 ? ? CZ A ARG 34 ? ? NH2 A ARG 34 ? ? 127.41 120.30 7.11 0.50 N 7 1 CB A TYR 50 ? ? CG A TYR 50 ? ? CD2 A TYR 50 ? ? 116.18 121.00 -4.82 0.60 N 8 1 CB A TYR 50 ? ? CG A TYR 50 ? ? CD1 A TYR 50 ? ? 124.80 121.00 3.80 0.60 N 9 1 NE A ARG 52 ? ? CZ A ARG 52 ? ? NH1 A ARG 52 ? ? 123.98 120.30 3.68 0.50 N 10 1 CB A ASP 57 ? ? CG A ASP 57 ? ? OD2 A ASP 57 ? ? 126.57 118.30 8.27 0.90 N 11 1 NE A ARG 71 ? ? CZ A ARG 71 ? ? NH1 A ARG 71 ? ? 125.54 120.30 5.24 0.50 N 12 1 NE A ARG 71 ? ? CZ A ARG 71 ? ? NH2 A ARG 71 ? ? 113.70 120.30 -6.60 0.50 N 13 1 CB A ASP 73 ? ? CG A ASP 73 ? ? OD2 A ASP 73 ? ? 111.26 118.30 -7.04 0.90 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 48 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 58.57 _pdbx_validate_torsion.psi -134.98 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 71 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.220 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A SER -1 ? A SER 1 2 1 Y 1 A ASP 81 ? A ASP 82 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 water HOH #