HEADER IMMUNOGLOBULIN 24-APR-95 1PLG TITLE EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE EPITOPES. TITLE 2 THE 2.8 ANGSTROMS RESOLUTION STRUCTURE AND THERMODYNAMICS OF LIGAND TITLE 3 BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC FOR ALPHA-(2->8)- TITLE 4 POLYSIALIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A=KAPPA=; COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: FAB FRAGMENT THAT BINDS POLYSIALIC ACID; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A=KAPPA=; COMPND 7 CHAIN: H; COMPND 8 FRAGMENT: FAB FRAGMENT THAT BINDS POLYSIALIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR S.V.EVANS,B.W.SIGURSKJOLD,H.J.JENNINGS,J.-R.BRISSON,W.C.TSE,R.TO, AUTHOR 2 E.ALTMAN,M.FROSCH,C.WEISGERBER,H.KRATZIN,S.KLEBERT,M.VAESEN, AUTHOR 3 D.BITTER-SUERMANN,D.R.ROSE,N.M.YOUNG,D.R.BUNDLE REVDAT 4 22-FEB-12 1PLG 1 JRNL VERSN REVDAT 3 24-FEB-09 1PLG 1 VERSN REVDAT 2 01-APR-03 1PLG 1 JRNL REVDAT 1 03-APR-96 1PLG 0 JRNL AUTH S.V.EVANS,B.W.SIGURSKJOLD,H.J.JENNINGS,J.R.BRISSON,R.TO, JRNL AUTH 2 W.C.TSE,E.ALTMAN,M.FROSCH,C.WEISGERBER,H.D.KRATZIN, JRNL AUTH 3 S.KLEBERT,M.VAESEN,D.BITTER-SUERMANN,D.R.ROSE,N.M.YOUNG, JRNL AUTH 4 D.R.BUNDLE JRNL TITL EVIDENCE FOR THE EXTENDED HELICAL NATURE OF POLYSACCHARIDE JRNL TITL 2 EPITOPES. THE 2.8 A RESOLUTION STRUCTURE AND THERMODYNAMICS JRNL TITL 3 OF LIGAND BINDING OF AN ANTIGEN BINDING FRAGMENT SPECIFIC JRNL TITL 4 FOR ALPHA-(2-->8)-POLYSIALIC ACID. JRNL REF BIOCHEMISTRY V. 34 6737 1995 JRNL REFN ISSN 0006-2960 JRNL PMID 7538787 JRNL DOI 10.1021/BI00020A019 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.-R.BRISSON,H.BAUMANN,A.IMBERTY,S.PEREZ,H.J.JENNINGS REMARK 1 TITL HELICAL EPITOPE OF THE GROUP B MENINGOCOCCAL REMARK 1 TITL 2 ALPHA(2->8)-LINKED SIALIC ACID POLYSACCHARIDE REMARK 1 REF BIOCHEMISTRY V. 31 4996 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 11503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3291 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PLG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-91 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SDMS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 8.500 REMARK 200 R MERGE (I) : 0.05400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.60500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.60500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 70.70000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.60500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.70000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.57000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.60500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 70.70000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 31 NE2 HIS L 31 CD2 -0.075 REMARK 500 HIS L 98 NE2 HIS L 98 CD2 -0.071 REMARK 500 HIS L 194 NE2 HIS L 194 CD2 -0.068 REMARK 500 HIS L 203 NE2 HIS L 203 CD2 -0.081 REMARK 500 HIS H 35 NE2 HIS H 35 CD2 -0.069 REMARK 500 HIS H 168 NE2 HIS H 168 CD2 -0.069 REMARK 500 HIS H 203 NE2 HIS H 203 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 24 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TRP L 40 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP L 40 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG L 59 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG L 82 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 GLN L 95 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU L 109 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 LEU L 141 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TRP L 153 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP L 153 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG L 160 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG L 160 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 TRP L 168 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP L 168 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR L 178 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 ASN L 195 CA - C - N ANGL. DEV. = 14.7 DEGREES REMARK 500 GLU H 10 CA - C - N ANGL. DEV. = 14.4 DEGREES REMARK 500 TYR H 27 CB - CG - CD2 ANGL. DEV. = -6.1 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 TRP H 36 CB - CG - CD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 TRP H 36 CG - CD2 - CE3 ANGL. DEV. = 8.8 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP H 47 CB - CG - CD1 ANGL. DEV. = -8.0 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP H 47 CG - CD2 - CE3 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP H 50 CD1 - CG - CD2 ANGL. DEV. = 5.2 DEGREES REMARK 500 TRP H 50 CB - CG - CD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 TRP H 50 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 TRP H 50 CG - CD2 - CE3 ANGL. DEV. = 5.7 DEGREES REMARK 500 MET H 81 CG - SD - CE ANGL. DEV. = -17.0 DEGREES REMARK 500 LEU H 83 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 ARG H 98 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 TRP H 107 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP H 107 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 THR H 136 N - CA - CB ANGL. DEV. = -11.9 DEGREES REMARK 500 TRP H 158 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP H 158 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 TRP H 158 CA - C - N ANGL. DEV. = 16.1 DEGREES REMARK 500 TRP H 192 CD1 - CG - CD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 TRP H 192 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU L 52 -61.23 -122.30 REMARK 500 ARG L 55 75.89 36.42 REMARK 500 VAL L 56 -32.33 56.52 REMARK 500 SER L 61 -77.24 -56.48 REMARK 500 GLU L 190 -47.63 179.15 REMARK 500 ASN L 195 -44.34 -140.46 REMARK 500 SER H 7 130.00 172.66 REMARK 500 CYS H 22 85.99 -151.90 REMARK 500 ASP H 105 -69.30 -108.53 REMARK 500 CYS H 132 127.59 165.17 REMARK 500 ASP H 134 48.42 -58.68 REMARK 500 THR H 135 -96.75 -125.99 REMARK 500 TRP H 158 -95.87 -93.68 REMARK 500 LEU H 163 76.69 90.33 REMARK 500 ALA H 205 4.70 -59.95 REMARK 500 SER H 206 -112.57 -166.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS L 44 PRO L 45 -147.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH L 227 DISTANCE = 5.75 ANGSTROMS DBREF 1PLG L 1 215 PIR S16112 S16112 1 215 DBREF 1PLG H 118 215 UNP P01865 GCAM_MOUSE 1 98 SEQRES 1 L 215 ASP VAL VAL MET THR GLN THR PRO LEU SER LEU PRO VAL SEQRES 2 L 215 SER LEU GLY ASP GLN ALA SER ILE SER CYS ARG SER SER SEQRES 3 L 215 GLN SER LEU VAL HIS SER ASN GLY ASN THR TYR LEU TYR SEQRES 4 L 215 TRP TYR LEU GLN LYS PRO GLY GLN SER PRO LYS PRO LEU SEQRES 5 L 215 ILE TYR ARG VAL SER ASN ARG PHE SER GLY VAL PRO ASP SEQRES 6 L 215 ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR LEU SEQRES 7 L 215 LYS ILE SER ARG VAL GLU ALA GLU ASP LEU GLY VAL TYR SEQRES 8 L 215 PHE CYS PHE GLN GLY THR HIS VAL PRO TYR THR PHE GLY SEQRES 9 L 215 GLY GLY THR ARG LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 L 215 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 L 215 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 L 215 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 L 215 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 L 215 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 L 215 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 L 215 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 L 215 PRO ILE VAL LYS SER PHE ASN SEQRES 1 H 215 GLN ILE GLN LEU GLN GLN SER GLY PRO GLU LEU VAL ARG SEQRES 2 H 215 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 215 TYR THR PHE THR ASP TYR TYR ILE HIS TRP VAL LYS GLN SEQRES 4 H 215 ARG PRO GLY GLU GLY LEU GLU TRP ILE GLY TRP ILE TYR SEQRES 5 H 215 PRO GLY SER GLY ASN THR LYS TYR ASN GLU LYS PHE LYS SEQRES 6 H 215 GLY LYS ALA THR LEU THR VAL ASP THR SER SER SER THR SEQRES 7 H 215 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 H 215 ALA VAL TYR PHE CYS ALA ARG GLY GLY LYS PHE ALA MET SEQRES 9 H 215 ASP TYR TRP GLY GLN GLY THR SER VAL THR VAL SER SER SEQRES 10 H 215 ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA PRO SEQRES 11 H 215 VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU GLY SEQRES 12 H 215 CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR LEU SEQRES 13 H 215 THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR SEQRES 14 H 215 PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SEQRES 15 H 215 SER SER VAL THR VAL THR SER SER THR TRP PRO SER GLN SEQRES 16 H 215 SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER THR SEQRES 17 H 215 LYS VAL ASP LYS LYS ILE GLU FORMUL 3 HOH *34(H2 O) HELIX 1 1 ALA L 85 ASP L 87 5 3 HELIX 2 2 SER L 127 SER L 132 1 6 HELIX 3 3 LYS L 188 TYR L 191 1 4 HELIX 4 4 PHE H 29 ASP H 31 5 3 HELIX 5 5 GLU H 62 PHE H 64 5 3 HELIX 6 6 SER H 88 ASP H 90 5 3 SHEET 1 A 4 MET L 4 THR L 7 0 SHEET 2 A 4 ALA L 19 SER L 25 -1 N ARG L 24 O THR L 5 SHEET 3 A 4 ASP L 75 ILE L 80 -1 N ILE L 80 O ALA L 19 SHEET 4 A 4 PHE L 67 SER L 72 -1 N SER L 72 O ASP L 75 SHEET 1 B 5 SER L 10 VAL L 13 0 SHEET 2 B 5 THR L 107 ILE L 111 1 N ARG L 108 O LEU L 11 SHEET 3 B 5 GLY L 89 GLN L 95 -1 N TYR L 91 O THR L 107 SHEET 4 B 5 LEU L 38 GLN L 43 -1 N GLN L 43 O VAL L 90 SHEET 5 B 5 PRO L 49 ILE L 53 -1 N ILE L 53 O TRP L 40 SHEET 1 C 4 THR L 119 PHE L 123 0 SHEET 2 C 4 GLY L 134 ASN L 142 -1 N ASN L 142 O THR L 119 SHEET 3 C 4 MET L 180 THR L 187 -1 N LEU L 186 O ALA L 135 SHEET 4 C 4 VAL L 164 TRP L 168 -1 N SER L 167 O SER L 181 SHEET 1 D 4 SER L 158 ARG L 160 0 SHEET 2 D 4 ILE L 149 ILE L 155 -1 N ILE L 155 O SER L 158 SHEET 3 D 4 TYR L 197 HIS L 203 -1 N THR L 202 O ASN L 150 SHEET 4 D 4 ILE L 210 PHE L 214 -1 N PHE L 214 O TYR L 197 SHEET 1 E 4 GLN H 3 GLY H 8 0 SHEET 2 E 4 VAL H 18 SER H 25 -1 N SER H 25 O GLN H 3 SHEET 3 E 4 THR H 78 LEU H 83 -1 N LEU H 83 O VAL H 18 SHEET 4 E 4 ALA H 68 ASP H 73 -1 N ASP H 73 O THR H 78 SHEET 1 F 5 THR H 111 VAL H 113 0 SHEET 2 F 5 ALA H 92 GLY H 99 -1 N TYR H 94 O THR H 111 SHEET 3 F 5 TYR H 33 GLN H 39 -1 N GLN H 39 O VAL H 93 SHEET 4 F 5 LEU H 45 TYR H 52 -1 N ILE H 51 O ILE H 34 SHEET 5 F 5 THR H 58 TYR H 60 -1 N LYS H 59 O TRP H 50 SHEET 1 G 4 SER H 124 LEU H 128 0 SHEET 2 G 4 SER H 139 TYR H 149 -1 N LYS H 147 O SER H 124 SHEET 3 G 4 TYR H 179 THR H 188 -1 N VAL H 187 O VAL H 140 SHEET 4 G 4 VAL H 167 THR H 169 -1 N HIS H 168 O SER H 184 SHEET 1 H 3 THR H 155 THR H 157 0 SHEET 2 H 3 THR H 198 ALA H 202 -1 N ALA H 202 O THR H 155 SHEET 3 H 3 LYS H 209 LYS H 212 -1 N ASP H 211 O CYS H 199 SHEET 1 I 2 VAL H 173 GLN H 175 0 SHEET 2 I 2 LEU H 178 THR H 180 -1 N THR H 180 O VAL H 173 SSBOND 1 CYS L 23 CYS L 93 1555 1555 2.02 SSBOND 2 CYS L 139 CYS L 199 1555 1555 2.02 SSBOND 3 CYS H 22 CYS H 96 1555 1555 2.04 SSBOND 4 CYS H 144 CYS H 199 1555 1555 2.01 CISPEP 1 THR L 7 PRO L 8 0 -11.36 CISPEP 2 VAL L 99 PRO L 100 0 -0.03 CISPEP 3 TYR L 145 PRO L 146 0 -4.84 CISPEP 4 PHE H 150 PRO H 151 0 -18.06 CISPEP 5 GLU H 152 PRO H 153 0 -13.53 CISPEP 6 TRP H 192 PRO H 193 0 3.63 CRYST1 79.140 91.210 141.400 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012636 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007072 0.00000