data_1PMH # _entry.id 1PMH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PMH RCSB RCSB019426 WWPDB D_1000019426 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1PMJ _pdbx_database_related.details 'The same carbohydrate binding module without mannohexaose' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PMH _pdbx_database_status.recvd_initial_deposition_date 2003-06-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Roske, Y.' 1 'Sunna, A.' 2 'Heinemann, U.' 3 # _citation.id primary _citation.title ;High-resolution crystal structures of Caldicellulosiruptor strain Rt8B.4 carbohydrate-binding module CBM27-1 and its complex with mannohexaose. ; _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 340 _citation.page_first 543 _citation.page_last 554 _citation.year 2004 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15210353 _citation.pdbx_database_id_DOI 10.1016/j.jmb.2004.04.072 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Roske, Y.' 1 ? primary 'Sunna, A.' 2 ? primary 'Pfeil, W.' 3 ? primary 'Heinemann, U.' 4 ? # _cell.entry_id 1PMH _cell.length_a 38.281 _cell.length_b 45.700 _cell.length_c 110.113 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PMH _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man beta-1,4-mannanase 20903.033 1 3.2.1.78 ? 'Carbohydrate binding module' ? 2 branched man ;beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose ; 990.860 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 1 ? ? ? ? 4 non-polymer syn 1,2-ETHANEDIOL 62.068 4 ? ? ? ? 5 water nat water 18.015 279 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name CsCBM27-1 # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;ESSVNPVVLDFEDGTV(MSE)SFGEAWGDSLKCIKKVSVSQDLQRPGNKYALRLDVEFNPNNGWDQGDLGTWIGGVVEGQ FDFTGYKSVEFE(MSE)FIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHKAFAIPEDFRT KKRAQLVFQFAGQNSNYKGPIYLDNVRIRPEDA ; _entity_poly.pdbx_seq_one_letter_code_can ;ESSVNPVVLDFEDGTVMSFGEAWGDSLKCIKKVSVSQDLQRPGNKYALRLDVEFNPNNGWDQGDLGTWIGGVVEGQFDFT GYKSVEFEMFIPYDEFSKSQGGFAYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHKAFAIPEDFRTKKRAQLVF QFAGQNSNYKGPIYLDNVRIRPEDA ; _entity_poly.pdbx_strand_id X _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 SER n 1 3 SER n 1 4 VAL n 1 5 ASN n 1 6 PRO n 1 7 VAL n 1 8 VAL n 1 9 LEU n 1 10 ASP n 1 11 PHE n 1 12 GLU n 1 13 ASP n 1 14 GLY n 1 15 THR n 1 16 VAL n 1 17 MSE n 1 18 SER n 1 19 PHE n 1 20 GLY n 1 21 GLU n 1 22 ALA n 1 23 TRP n 1 24 GLY n 1 25 ASP n 1 26 SER n 1 27 LEU n 1 28 LYS n 1 29 CYS n 1 30 ILE n 1 31 LYS n 1 32 LYS n 1 33 VAL n 1 34 SER n 1 35 VAL n 1 36 SER n 1 37 GLN n 1 38 ASP n 1 39 LEU n 1 40 GLN n 1 41 ARG n 1 42 PRO n 1 43 GLY n 1 44 ASN n 1 45 LYS n 1 46 TYR n 1 47 ALA n 1 48 LEU n 1 49 ARG n 1 50 LEU n 1 51 ASP n 1 52 VAL n 1 53 GLU n 1 54 PHE n 1 55 ASN n 1 56 PRO n 1 57 ASN n 1 58 ASN n 1 59 GLY n 1 60 TRP n 1 61 ASP n 1 62 GLN n 1 63 GLY n 1 64 ASP n 1 65 LEU n 1 66 GLY n 1 67 THR n 1 68 TRP n 1 69 ILE n 1 70 GLY n 1 71 GLY n 1 72 VAL n 1 73 VAL n 1 74 GLU n 1 75 GLY n 1 76 GLN n 1 77 PHE n 1 78 ASP n 1 79 PHE n 1 80 THR n 1 81 GLY n 1 82 TYR n 1 83 LYS n 1 84 SER n 1 85 VAL n 1 86 GLU n 1 87 PHE n 1 88 GLU n 1 89 MSE n 1 90 PHE n 1 91 ILE n 1 92 PRO n 1 93 TYR n 1 94 ASP n 1 95 GLU n 1 96 PHE n 1 97 SER n 1 98 LYS n 1 99 SER n 1 100 GLN n 1 101 GLY n 1 102 GLY n 1 103 PHE n 1 104 ALA n 1 105 TYR n 1 106 LYS n 1 107 VAL n 1 108 VAL n 1 109 ILE n 1 110 ASN n 1 111 ASP n 1 112 GLY n 1 113 TRP n 1 114 LYS n 1 115 GLU n 1 116 LEU n 1 117 GLY n 1 118 SER n 1 119 GLU n 1 120 PHE n 1 121 ASN n 1 122 ILE n 1 123 THR n 1 124 ALA n 1 125 ASN n 1 126 ALA n 1 127 GLY n 1 128 LYS n 1 129 LYS n 1 130 VAL n 1 131 LYS n 1 132 ILE n 1 133 ASN n 1 134 GLY n 1 135 LYS n 1 136 ASP n 1 137 TYR n 1 138 THR n 1 139 VAL n 1 140 ILE n 1 141 HIS n 1 142 LYS n 1 143 ALA n 1 144 PHE n 1 145 ALA n 1 146 ILE n 1 147 PRO n 1 148 GLU n 1 149 ASP n 1 150 PHE n 1 151 ARG n 1 152 THR n 1 153 LYS n 1 154 LYS n 1 155 ARG n 1 156 ALA n 1 157 GLN n 1 158 LEU n 1 159 VAL n 1 160 PHE n 1 161 GLN n 1 162 PHE n 1 163 ALA n 1 164 GLY n 1 165 GLN n 1 166 ASN n 1 167 SER n 1 168 ASN n 1 169 TYR n 1 170 LYS n 1 171 GLY n 1 172 PRO n 1 173 ILE n 1 174 TYR n 1 175 LEU n 1 176 ASP n 1 177 ASN n 1 178 VAL n 1 179 ARG n 1 180 ILE n 1 181 ARG n 1 182 PRO n 1 183 GLU n 1 184 ASP n 1 185 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Caldicellulosiruptor _entity_src_gen.pdbx_gene_src_gene manA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain Rt8B.4 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Caldicellulosiruptor saccharolyticus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 44001 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain DH5alpha _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pPROEX HTc' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code AAC44232 _struct_ref.pdbx_db_accession 1491795 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ESSVNPVVLDFEDGTVMSFGEAWGDSLKCIKKVSVSQDLQRPGNKYALRLDVEFNPNNGWDQGDLGTWFGGVVEGQFDFT GYKSVEFEMFIPYDEFSKSQGGFPYKVVINDGWKELGSEFNITANAGKKVKINGKDYTVIHKAFAIPEDFRTKKRAQLVF QFAGQNSNYKGPIYLDNVRIRPEDA ; _struct_ref.pdbx_align_begin 36 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PMH _struct_ref_seq.pdbx_strand_id X _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1491795 _struct_ref_seq.db_align_beg 36 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 220 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1PMH MSE X 17 ? GB 1491795 MET 52 'modified residue' 17 1 1 1PMH ILE X 69 ? GB 1491795 PHE 104 'SEE REMARK 999' 69 2 1 1PMH MSE X 89 ? GB 1491795 MET 124 'modified residue' 89 3 1 1PMH ALA X 104 ? GB 1491795 PRO 139 'SEE REMARK 999' 104 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PMH _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.59 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PEG4000, Isopropanol, Na-Hepes, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 283.15K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 110.0 ? 1 2 110.0 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' MARRESEARCH 2003-01-30 mirrors 2 'IMAGE PLATE' MARRESEARCH 2003-01-30 mirrors # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 1 1 M 'Double crystal' 'SINGLE WAVELENGTH' x-ray 2 1 M 'Double crystal' 'SINGLE WAVELENGTH' x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9795 1.0 2 0.97981 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'BESSY BEAMLINE 14.2' BESSY 14.2 ? 0.9795 2 SYNCHROTRON 'BESSY BEAMLINE 14.2' BESSY 14.2 ? 0.97981 # _reflns.entry_id 1PMH _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 0.0 _reflns.d_resolution_high 1.06 _reflns.d_resolution_low 30.0 _reflns.number_all 84822 _reflns.number_obs 81658 _reflns.percent_possible_obs 89.8 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.048 _reflns.pdbx_netI_over_sigmaI 34.6 _reflns.B_iso_Wilson_estimate 8.8 _reflns.pdbx_redundancy 5.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1,2 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.06 _reflns_shell.d_res_low 1.09 _reflns_shell.percent_possible_all 74.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.09 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1544 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PMH _refine.ls_number_reflns_obs 80596 _refine.ls_number_reflns_all 84822 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.00 _refine.ls_d_res_high 1.06 _refine.ls_percent_reflns_obs 95.90 _refine.ls_R_factor_obs 0.14287 _refine.ls_R_factor_all 0.204 _refine.ls_R_factor_R_work 0.14132 _refine.ls_R_factor_R_free 0.1729 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 4226 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.984 _refine.correlation_coeff_Fo_to_Fc_free 0.978 _refine.B_iso_mean 17.624 _refine.aniso_B[1][1] 0.91 _refine.aniso_B[2][2] -0.74 _refine.aniso_B[3][3] -0.17 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.027 _refine.pdbx_overall_ESU_R_Free 0.029 _refine.overall_SU_ML 0.022 _refine.overall_SU_B 0.469 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1528 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 97 _refine_hist.number_atoms_solvent 279 _refine_hist.number_atoms_total 1904 _refine_hist.d_res_high 1.06 _refine_hist.d_res_low 23.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.014 0.022 ? 1662 'X-RAY DIFFRACTION' ? r_bond_other_d 0.001 0.020 ? 1430 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.070 2.005 ? 2250 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.801 3.000 ? 3360 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.353 5.000 ? 182 'X-RAY DIFFRACTION' ? r_chiral_restr 0.133 0.200 ? 261 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 1727 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.015 0.020 ? 319 'X-RAY DIFFRACTION' ? r_nbd_refined 0.235 0.200 ? 295 'X-RAY DIFFRACTION' ? r_nbd_other 0.267 0.200 ? 1618 'X-RAY DIFFRACTION' ? r_nbtor_other 0.093 0.200 ? 912 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.165 0.200 ? 196 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.366 0.200 ? 17 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.354 0.200 ? 47 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.242 0.200 ? 40 'X-RAY DIFFRACTION' ? r_mcbond_it 2.948 3.000 ? 918 'X-RAY DIFFRACTION' ? r_mcangle_it 3.945 6.000 ? 1500 'X-RAY DIFFRACTION' ? r_scbond_it 5.328 5.000 ? 744 'X-RAY DIFFRACTION' ? r_scangle_it 6.779 7.500 ? 750 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 2.775 2.500 ? 1662 'X-RAY DIFFRACTION' ? r_sphericity_free 15.470 4.000 ? 283 'X-RAY DIFFRACTION' ? r_sphericity_bonded 9.375 4.000 ? 1624 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.060 _refine_ls_shell.d_res_low 1.087 _refine_ls_shell.number_reflns_R_work 5099 _refine_ls_shell.R_factor_R_work 0.394 _refine_ls_shell.percent_reflns_obs 82.5 _refine_ls_shell.R_factor_R_free 0.398 _refine_ls_shell.R_factor_R_free_error 0.05 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 255 _refine_ls_shell.number_reflns_obs 71983 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1PMH _struct.title 'Crystal structure of Caldicellulosiruptor saccharolyticus CBM27-1 in complex with mannohexaose' _struct.pdbx_descriptor 'beta-1,4-mannanase (E.C.3.2.1.78)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PMH _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'jellyroll beta-sandwich, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 _struct_biol.details ? _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 70 ? VAL A 72 ? GLY X 70 VAL X 72 5 ? 3 HELX_P HELX_P2 2 TYR A 93 ? SER A 99 ? TYR X 93 SER X 99 1 ? 7 HELX_P HELX_P3 3 PRO A 147 ? ARG A 151 ? PRO X 147 ARG X 151 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A VAL 16 C ? ? ? 1_555 A MSE 17 N ? ? X VAL 16 X MSE 17 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale2 covale both ? A MSE 17 C ? ? ? 1_555 A SER 18 N ? ? X MSE 17 X SER 18 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale3 covale both ? A GLU 88 C ? ? ? 1_555 A MSE 89 N ? ? X GLU 88 X MSE 89 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MSE 89 C ? ? ? 1_555 A PHE 90 N ? ? X MSE 89 X PHE 90 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale5 covale both ? B MAN . O4 ? ? ? 1_555 B BMA . C1 ? ? A MAN 1 A BMA 2 1_555 ? ? ? ? ? ? ? 1.419 ? ? covale6 covale both ? B BMA . O4 ? ? ? 1_555 B BMA . C1 ? ? A BMA 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.398 ? ? covale7 covale both ? B BMA . O4 ? ? ? 1_555 B BMA . C1 ? ? A BMA 3 A BMA 4 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale8 covale both ? B BMA . O4 ? ? ? 1_555 B BMA . C1 ? ? A BMA 4 A BMA 5 1_555 ? ? ? ? ? ? ? 1.439 ? ? covale9 covale both ? B BMA . O4 ? ? ? 1_555 B BMA . C1 A ? A BMA 5 A BMA 6 1_555 ? ? ? ? ? ? ? 1.458 ? ? covale10 covale both ? B BMA . O4 ? ? ? 1_555 B BMA . C1 B ? A BMA 5 A BMA 6 1_555 ? ? ? ? ? ? ? 1.449 ? ? metalc1 metalc ? ? A ASP 10 O ? ? ? 1_555 C CA . CA ? ? X ASP 10 X CA 300 1_555 ? ? ? ? ? ? ? 2.355 ? ? metalc2 metalc ? ? A GLU 12 OE2 ? ? ? 1_555 C CA . CA ? ? X GLU 12 X CA 300 1_555 ? ? ? ? ? ? ? 2.366 ? ? metalc3 metalc ? ? A ASN 44 OD1 ? ? ? 1_555 C CA . CA ? ? X ASN 44 X CA 300 1_555 ? ? ? ? ? ? ? 2.369 ? ? metalc4 metalc ? ? A TYR 46 O ? ? ? 1_555 C CA . CA ? ? X TYR 46 X CA 300 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc5 metalc ? ? A ASP 176 OD1 ? ? ? 1_555 C CA . CA ? ? X ASP 176 X CA 300 1_555 ? ? ? ? ? ? ? 2.490 ? ? metalc6 metalc ? ? A ASP 176 OD2 ? ? ? 1_555 C CA . CA ? ? X ASP 176 X CA 300 1_555 ? ? ? ? ? ? ? 2.551 ? ? metalc7 metalc ? ? C CA . CA ? ? ? 1_555 H HOH . O ? ? X CA 300 X HOH 432 1_555 ? ? ? ? ? ? ? 2.322 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 5 ? D ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 7 ? LEU A 9 ? VAL X 7 LEU X 9 A 2 LYS A 170 ? ARG A 181 ? LYS X 170 ARG X 181 A 3 ALA A 47 ? GLU A 53 ? ALA X 47 GLU X 53 A 4 ILE A 30 ? SER A 36 ? ILE X 30 SER X 36 B 1 VAL A 7 ? LEU A 9 ? VAL X 7 LEU X 9 B 2 LYS A 170 ? ARG A 181 ? LYS X 170 ARG X 181 B 3 SER A 84 ? PRO A 92 ? SER X 84 PRO X 92 B 4 LYS A 135 ? ALA A 145 ? LYS X 135 ALA X 145 B 5 LYS A 128 ? ILE A 132 ? LYS X 128 ILE X 132 C 1 GLY A 20 ? GLU A 21 ? GLY X 20 GLU X 21 C 2 ASP A 61 ? TRP A 68 ? ASP X 61 TRP X 68 C 3 GLN A 157 ? GLY A 164 ? GLN X 157 GLY X 164 C 4 PHE A 103 ? ILE A 109 ? PHE X 103 ILE X 109 C 5 LYS A 114 ? ILE A 122 ? LYS X 114 ILE X 122 D 1 GLN A 76 ? ASP A 78 ? GLN X 76 ASP X 78 D 2 LYS A 153 ? ARG A 155 ? LYS X 153 ARG X 155 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 9 ? N LEU X 9 O VAL A 178 ? O VAL X 178 A 2 3 O ILE A 173 ? O ILE X 173 N LEU A 50 ? N LEU X 50 A 3 4 O ARG A 49 ? O ARG X 49 N SER A 34 ? N SER X 34 B 1 2 N LEU A 9 ? N LEU X 9 O VAL A 178 ? O VAL X 178 B 2 3 O TYR A 174 ? O TYR X 174 N PHE A 90 ? N PHE X 90 B 3 4 N ILE A 91 ? N ILE X 91 O THR A 138 ? O THR X 138 B 4 5 O LYS A 135 ? O LYS X 135 N ILE A 132 ? N ILE X 132 C 1 2 N GLY A 20 ? N GLY X 20 O GLY A 66 ? O GLY X 66 C 2 3 N LEU A 65 ? N LEU X 65 O PHE A 160 ? O PHE X 160 C 3 4 O VAL A 159 ? O VAL X 159 N VAL A 108 ? N VAL X 108 C 4 5 N PHE A 103 ? N PHE X 103 O ILE A 122 ? O ILE X 122 D 1 2 N PHE A 77 ? N PHE X 77 O LYS A 154 ? O LYS X 154 # _database_PDB_matrix.entry_id 1PMH _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PMH _atom_sites.fract_transf_matrix[1][1] 0.026123 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021882 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009082 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 1 ? ? ? X . n A 1 2 SER 2 2 ? ? ? X . n A 1 3 SER 3 3 3 SER SER X . n A 1 4 VAL 4 4 4 VAL VAL X . n A 1 5 ASN 5 5 5 ASN ASN X . n A 1 6 PRO 6 6 6 PRO PRO X . n A 1 7 VAL 7 7 7 VAL VAL X . n A 1 8 VAL 8 8 8 VAL VAL X . n A 1 9 LEU 9 9 9 LEU LEU X . n A 1 10 ASP 10 10 10 ASP ASP X . n A 1 11 PHE 11 11 11 PHE PHE X . n A 1 12 GLU 12 12 12 GLU GLU X . n A 1 13 ASP 13 13 13 ASP ASP X . n A 1 14 GLY 14 14 14 GLY GLY X . n A 1 15 THR 15 15 15 THR THR X . n A 1 16 VAL 16 16 16 VAL VAL X . n A 1 17 MSE 17 17 17 MSE MSE X . n A 1 18 SER 18 18 18 SER SER X . n A 1 19 PHE 19 19 19 PHE PHE X . n A 1 20 GLY 20 20 20 GLY GLY X . n A 1 21 GLU 21 21 21 GLU GLU X . n A 1 22 ALA 22 22 22 ALA ALA X . n A 1 23 TRP 23 23 23 TRP TRP X . n A 1 24 GLY 24 24 24 GLY GLY X . n A 1 25 ASP 25 25 25 ASP ASP X . n A 1 26 SER 26 26 26 SER SER X . n A 1 27 LEU 27 27 27 LEU LEU X . n A 1 28 LYS 28 28 28 LYS LYS X . n A 1 29 CYS 29 29 29 CYS CYS X . n A 1 30 ILE 30 30 30 ILE ILE X . n A 1 31 LYS 31 31 31 LYS LYS X . n A 1 32 LYS 32 32 32 LYS LYS X . n A 1 33 VAL 33 33 33 VAL VAL X . n A 1 34 SER 34 34 34 SER SER X . n A 1 35 VAL 35 35 35 VAL VAL X . n A 1 36 SER 36 36 36 SER SER X . n A 1 37 GLN 37 37 37 GLN GLN X . n A 1 38 ASP 38 38 38 ASP ASP X . n A 1 39 LEU 39 39 39 LEU LEU X . n A 1 40 GLN 40 40 40 GLN GLN X . n A 1 41 ARG 41 41 41 ARG ARG X . n A 1 42 PRO 42 42 42 PRO PRO X . n A 1 43 GLY 43 43 43 GLY GLY X . n A 1 44 ASN 44 44 44 ASN ASN X . n A 1 45 LYS 45 45 45 LYS LYS X . n A 1 46 TYR 46 46 46 TYR TYR X . n A 1 47 ALA 47 47 47 ALA ALA X . n A 1 48 LEU 48 48 48 LEU LEU X . n A 1 49 ARG 49 49 49 ARG ARG X . n A 1 50 LEU 50 50 50 LEU LEU X . n A 1 51 ASP 51 51 51 ASP ASP X . n A 1 52 VAL 52 52 52 VAL VAL X . n A 1 53 GLU 53 53 53 GLU GLU X . n A 1 54 PHE 54 54 54 PHE PHE X . n A 1 55 ASN 55 55 55 ASN ASN X . n A 1 56 PRO 56 56 56 PRO PRO X . n A 1 57 ASN 57 57 57 ASN ASN X . n A 1 58 ASN 58 58 58 ASN ASN X . n A 1 59 GLY 59 59 59 GLY GLY X . n A 1 60 TRP 60 60 60 TRP TRP X . n A 1 61 ASP 61 61 61 ASP ASP X . n A 1 62 GLN 62 62 62 GLN GLN X . n A 1 63 GLY 63 63 63 GLY GLY X . n A 1 64 ASP 64 64 64 ASP ASP X . n A 1 65 LEU 65 65 65 LEU LEU X . n A 1 66 GLY 66 66 66 GLY GLY X . n A 1 67 THR 67 67 67 THR THR X . n A 1 68 TRP 68 68 68 TRP TRP X . n A 1 69 ILE 69 69 69 ILE ILE X . n A 1 70 GLY 70 70 70 GLY GLY X . n A 1 71 GLY 71 71 71 GLY GLY X . n A 1 72 VAL 72 72 72 VAL VAL X . n A 1 73 VAL 73 73 73 VAL VAL X . n A 1 74 GLU 74 74 74 GLU GLU X . n A 1 75 GLY 75 75 75 GLY GLY X . n A 1 76 GLN 76 76 76 GLN GLN X . n A 1 77 PHE 77 77 77 PHE PHE X . n A 1 78 ASP 78 78 78 ASP ASP X . n A 1 79 PHE 79 79 79 PHE PHE X . n A 1 80 THR 80 80 80 THR THR X . n A 1 81 GLY 81 81 81 GLY GLY X . n A 1 82 TYR 82 82 82 TYR TYR X . n A 1 83 LYS 83 83 83 LYS LYS X . n A 1 84 SER 84 84 84 SER SER X . n A 1 85 VAL 85 85 85 VAL VAL X . n A 1 86 GLU 86 86 86 GLU GLU X . n A 1 87 PHE 87 87 87 PHE PHE X . n A 1 88 GLU 88 88 88 GLU GLU X . n A 1 89 MSE 89 89 89 MSE MSE X . n A 1 90 PHE 90 90 90 PHE PHE X . n A 1 91 ILE 91 91 91 ILE ILE X . n A 1 92 PRO 92 92 92 PRO PRO X . n A 1 93 TYR 93 93 93 TYR TYR X . n A 1 94 ASP 94 94 94 ASP ASP X . n A 1 95 GLU 95 95 95 GLU GLU X . n A 1 96 PHE 96 96 96 PHE PHE X . n A 1 97 SER 97 97 97 SER SER X . n A 1 98 LYS 98 98 98 LYS LYS X . n A 1 99 SER 99 99 99 SER SER X . n A 1 100 GLN 100 100 100 GLN GLN X . n A 1 101 GLY 101 101 101 GLY GLY X . n A 1 102 GLY 102 102 102 GLY GLY X . n A 1 103 PHE 103 103 103 PHE PHE X . n A 1 104 ALA 104 104 104 ALA ALA X . n A 1 105 TYR 105 105 105 TYR TYR X . n A 1 106 LYS 106 106 106 LYS LYS X . n A 1 107 VAL 107 107 107 VAL VAL X . n A 1 108 VAL 108 108 108 VAL VAL X . n A 1 109 ILE 109 109 109 ILE ILE X . n A 1 110 ASN 110 110 110 ASN ASN X . n A 1 111 ASP 111 111 111 ASP ASP X . n A 1 112 GLY 112 112 112 GLY GLY X . n A 1 113 TRP 113 113 113 TRP TRP X . n A 1 114 LYS 114 114 114 LYS LYS X . n A 1 115 GLU 115 115 115 GLU GLU X . n A 1 116 LEU 116 116 116 LEU LEU X . n A 1 117 GLY 117 117 117 GLY GLY X . n A 1 118 SER 118 118 118 SER SER X . n A 1 119 GLU 119 119 119 GLU GLU X . n A 1 120 PHE 120 120 120 PHE PHE X . n A 1 121 ASN 121 121 121 ASN ASN X . n A 1 122 ILE 122 122 122 ILE ILE X . n A 1 123 THR 123 123 123 THR THR X . n A 1 124 ALA 124 124 124 ALA ALA X . n A 1 125 ASN 125 125 125 ASN ASN X . n A 1 126 ALA 126 126 126 ALA ALA X . n A 1 127 GLY 127 127 127 GLY GLY X . n A 1 128 LYS 128 128 128 LYS LYS X . n A 1 129 LYS 129 129 129 LYS LYS X . n A 1 130 VAL 130 130 130 VAL VAL X . n A 1 131 LYS 131 131 131 LYS LYS X . n A 1 132 ILE 132 132 132 ILE ILE X . n A 1 133 ASN 133 133 133 ASN ASN X . n A 1 134 GLY 134 134 134 GLY GLY X . n A 1 135 LYS 135 135 135 LYS LYS X . n A 1 136 ASP 136 136 136 ASP ASP X . n A 1 137 TYR 137 137 137 TYR TYR X . n A 1 138 THR 138 138 138 THR THR X . n A 1 139 VAL 139 139 139 VAL VAL X . n A 1 140 ILE 140 140 140 ILE ILE X . n A 1 141 HIS 141 141 141 HIS HIS X . n A 1 142 LYS 142 142 142 LYS LYS X . n A 1 143 ALA 143 143 143 ALA ALA X . n A 1 144 PHE 144 144 144 PHE PHE X . n A 1 145 ALA 145 145 145 ALA ALA X . n A 1 146 ILE 146 146 146 ILE ILE X . n A 1 147 PRO 147 147 147 PRO PRO X . n A 1 148 GLU 148 148 148 GLU GLU X . n A 1 149 ASP 149 149 149 ASP ASP X . n A 1 150 PHE 150 150 150 PHE PHE X . n A 1 151 ARG 151 151 151 ARG ARG X . n A 1 152 THR 152 152 152 THR THR X . n A 1 153 LYS 153 153 153 LYS LYS X . n A 1 154 LYS 154 154 154 LYS LYS X . n A 1 155 ARG 155 155 155 ARG ARG X . n A 1 156 ALA 156 156 156 ALA ALA X . n A 1 157 GLN 157 157 157 GLN GLN X . n A 1 158 LEU 158 158 158 LEU LEU X . n A 1 159 VAL 159 159 159 VAL VAL X . n A 1 160 PHE 160 160 160 PHE PHE X . n A 1 161 GLN 161 161 161 GLN GLN X . n A 1 162 PHE 162 162 162 PHE PHE X . n A 1 163 ALA 163 163 163 ALA ALA X . n A 1 164 GLY 164 164 164 GLY GLY X . n A 1 165 GLN 165 165 165 GLN GLN X . n A 1 166 ASN 166 166 166 ASN ASN X . n A 1 167 SER 167 167 167 SER SER X . n A 1 168 ASN 168 168 168 ASN ASN X . n A 1 169 TYR 169 169 169 TYR TYR X . n A 1 170 LYS 170 170 170 LYS LYS X . n A 1 171 GLY 171 171 171 GLY GLY X . n A 1 172 PRO 172 172 172 PRO PRO X . n A 1 173 ILE 173 173 173 ILE ILE X . n A 1 174 TYR 174 174 174 TYR TYR X . n A 1 175 LEU 175 175 175 LEU LEU X . n A 1 176 ASP 176 176 176 ASP ASP X . n A 1 177 ASN 177 177 177 ASN ASN X . n A 1 178 VAL 178 178 178 VAL VAL X . n A 1 179 ARG 179 179 179 ARG ARG X . n A 1 180 ILE 180 180 180 ILE ILE X . n A 1 181 ARG 181 181 181 ARG ARG X . n A 1 182 PRO 182 182 182 PRO PRO X . n A 1 183 GLU 183 183 183 GLU GLU X . n A 1 184 ASP 184 184 184 ASP ASP X . n A 1 185 ALA 185 185 185 ALA ALA X . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 300 300 CA CA X . D 4 EDO 1 401 401 EDO EDO X . E 4 EDO 1 402 402 EDO EDO X . F 4 EDO 1 403 403 EDO EDO X . G 4 EDO 1 404 404 EDO EDO X . H 5 HOH 1 405 1 HOH HOH X . H 5 HOH 2 406 2 HOH HOH X . H 5 HOH 3 407 3 HOH HOH X . H 5 HOH 4 408 4 HOH HOH X . H 5 HOH 5 409 5 HOH HOH X . H 5 HOH 6 410 6 HOH HOH X . H 5 HOH 7 411 7 HOH HOH X . H 5 HOH 8 412 8 HOH HOH X . H 5 HOH 9 413 9 HOH HOH X . H 5 HOH 10 414 10 HOH HOH X . H 5 HOH 11 415 11 HOH HOH X . H 5 HOH 12 416 12 HOH HOH X . H 5 HOH 13 417 13 HOH HOH X . H 5 HOH 14 418 14 HOH HOH X . H 5 HOH 15 419 15 HOH HOH X . H 5 HOH 16 420 16 HOH HOH X . H 5 HOH 17 421 17 HOH HOH X . H 5 HOH 18 422 18 HOH HOH X . H 5 HOH 19 423 19 HOH HOH X . H 5 HOH 20 424 20 HOH HOH X . H 5 HOH 21 425 21 HOH HOH X . H 5 HOH 22 426 22 HOH HOH X . H 5 HOH 23 427 23 HOH HOH X . H 5 HOH 24 428 24 HOH HOH X . H 5 HOH 25 429 25 HOH HOH X . H 5 HOH 26 430 26 HOH HOH X . H 5 HOH 27 431 27 HOH HOH X . H 5 HOH 28 432 28 HOH HOH X . H 5 HOH 29 433 29 HOH HOH X . H 5 HOH 30 434 30 HOH HOH X . H 5 HOH 31 435 31 HOH HOH X . H 5 HOH 32 436 32 HOH HOH X . H 5 HOH 33 437 33 HOH HOH X . H 5 HOH 34 438 34 HOH HOH X . H 5 HOH 35 439 35 HOH HOH X . H 5 HOH 36 440 36 HOH HOH X . H 5 HOH 37 441 37 HOH HOH X . H 5 HOH 38 442 38 HOH HOH X . H 5 HOH 39 443 39 HOH HOH X . H 5 HOH 40 444 40 HOH HOH X . H 5 HOH 41 445 41 HOH HOH X . H 5 HOH 42 446 42 HOH HOH X . H 5 HOH 43 447 43 HOH HOH X . H 5 HOH 44 448 44 HOH HOH X . H 5 HOH 45 449 45 HOH HOH X . H 5 HOH 46 450 46 HOH HOH X . H 5 HOH 47 451 47 HOH HOH X . H 5 HOH 48 452 48 HOH HOH X . H 5 HOH 49 453 49 HOH HOH X . H 5 HOH 50 454 50 HOH HOH X . H 5 HOH 51 455 51 HOH HOH X . H 5 HOH 52 456 52 HOH HOH X . H 5 HOH 53 457 53 HOH HOH X . H 5 HOH 54 458 54 HOH HOH X . H 5 HOH 55 459 55 HOH HOH X . H 5 HOH 56 460 56 HOH HOH X . H 5 HOH 57 461 57 HOH HOH X . H 5 HOH 58 462 58 HOH HOH X . H 5 HOH 59 463 59 HOH HOH X . H 5 HOH 60 464 60 HOH HOH X . H 5 HOH 61 465 61 HOH HOH X . H 5 HOH 62 466 62 HOH HOH X . H 5 HOH 63 467 63 HOH HOH X . H 5 HOH 64 468 64 HOH HOH X . H 5 HOH 65 469 65 HOH HOH X . H 5 HOH 66 470 66 HOH HOH X . H 5 HOH 67 471 67 HOH HOH X . H 5 HOH 68 472 68 HOH HOH X . H 5 HOH 69 473 69 HOH HOH X . H 5 HOH 70 474 70 HOH HOH X . H 5 HOH 71 475 71 HOH HOH X . H 5 HOH 72 476 72 HOH HOH X . H 5 HOH 73 477 73 HOH HOH X . H 5 HOH 74 478 74 HOH HOH X . H 5 HOH 75 479 75 HOH HOH X . H 5 HOH 76 480 76 HOH HOH X . H 5 HOH 77 481 77 HOH HOH X . H 5 HOH 78 482 78 HOH HOH X . H 5 HOH 79 483 79 HOH HOH X . H 5 HOH 80 484 80 HOH HOH X . H 5 HOH 81 485 81 HOH HOH X . H 5 HOH 82 486 82 HOH HOH X . H 5 HOH 83 487 83 HOH HOH X . H 5 HOH 84 488 84 HOH HOH X . H 5 HOH 85 489 85 HOH HOH X . H 5 HOH 86 490 86 HOH HOH X . H 5 HOH 87 491 87 HOH HOH X . H 5 HOH 88 492 88 HOH HOH X . H 5 HOH 89 493 89 HOH HOH X . H 5 HOH 90 494 90 HOH HOH X . H 5 HOH 91 495 91 HOH HOH X . H 5 HOH 92 496 92 HOH HOH X . H 5 HOH 93 497 93 HOH HOH X . H 5 HOH 94 498 94 HOH HOH X . H 5 HOH 95 499 95 HOH HOH X . H 5 HOH 96 500 96 HOH HOH X . H 5 HOH 97 501 97 HOH HOH X . H 5 HOH 98 502 98 HOH HOH X . H 5 HOH 99 503 99 HOH HOH X . H 5 HOH 100 504 100 HOH HOH X . H 5 HOH 101 505 101 HOH HOH X . H 5 HOH 102 506 102 HOH HOH X . H 5 HOH 103 507 103 HOH HOH X . H 5 HOH 104 508 104 HOH HOH X . H 5 HOH 105 509 105 HOH HOH X . H 5 HOH 106 510 106 HOH HOH X . H 5 HOH 107 511 107 HOH HOH X . H 5 HOH 108 512 108 HOH HOH X . H 5 HOH 109 513 109 HOH HOH X . H 5 HOH 110 514 110 HOH HOH X . H 5 HOH 111 515 111 HOH HOH X . H 5 HOH 112 516 112 HOH HOH X . H 5 HOH 113 517 113 HOH HOH X . H 5 HOH 114 518 114 HOH HOH X . H 5 HOH 115 519 115 HOH HOH X . H 5 HOH 116 520 116 HOH HOH X . H 5 HOH 117 521 117 HOH HOH X . H 5 HOH 118 522 118 HOH HOH X . H 5 HOH 119 523 119 HOH HOH X . H 5 HOH 120 524 120 HOH HOH X . H 5 HOH 121 525 121 HOH HOH X . H 5 HOH 122 526 122 HOH HOH X . H 5 HOH 123 527 123 HOH HOH X . H 5 HOH 124 528 124 HOH HOH X . H 5 HOH 125 529 125 HOH HOH X . H 5 HOH 126 530 126 HOH HOH X . H 5 HOH 127 531 127 HOH HOH X . H 5 HOH 128 532 128 HOH HOH X . H 5 HOH 129 533 129 HOH HOH X . H 5 HOH 130 534 130 HOH HOH X . H 5 HOH 131 535 131 HOH HOH X . H 5 HOH 132 536 132 HOH HOH X . H 5 HOH 133 537 133 HOH HOH X . H 5 HOH 134 538 134 HOH HOH X . H 5 HOH 135 539 135 HOH HOH X . H 5 HOH 136 540 136 HOH HOH X . H 5 HOH 137 541 137 HOH HOH X . H 5 HOH 138 542 138 HOH HOH X . H 5 HOH 139 543 139 HOH HOH X . H 5 HOH 140 544 140 HOH HOH X . H 5 HOH 141 545 141 HOH HOH X . H 5 HOH 142 546 142 HOH HOH X . H 5 HOH 143 547 143 HOH HOH X . H 5 HOH 144 548 144 HOH HOH X . H 5 HOH 145 549 145 HOH HOH X . H 5 HOH 146 550 146 HOH HOH X . H 5 HOH 147 551 147 HOH HOH X . H 5 HOH 148 552 148 HOH HOH X . H 5 HOH 149 553 149 HOH HOH X . H 5 HOH 150 554 150 HOH HOH X . H 5 HOH 151 555 151 HOH HOH X . H 5 HOH 152 556 152 HOH HOH X . H 5 HOH 153 557 153 HOH HOH X . H 5 HOH 154 558 154 HOH HOH X . H 5 HOH 155 559 155 HOH HOH X . H 5 HOH 156 560 156 HOH HOH X . H 5 HOH 157 561 157 HOH HOH X . H 5 HOH 158 562 158 HOH HOH X . H 5 HOH 159 563 159 HOH HOH X . H 5 HOH 160 564 160 HOH HOH X . H 5 HOH 161 565 161 HOH HOH X . H 5 HOH 162 566 162 HOH HOH X . H 5 HOH 163 567 163 HOH HOH X . H 5 HOH 164 568 164 HOH HOH X . H 5 HOH 165 569 165 HOH HOH X . H 5 HOH 166 570 166 HOH HOH X . H 5 HOH 167 571 167 HOH HOH X . H 5 HOH 168 572 168 HOH HOH X . H 5 HOH 169 573 169 HOH HOH X . H 5 HOH 170 574 170 HOH HOH X . H 5 HOH 171 575 171 HOH HOH X . H 5 HOH 172 576 172 HOH HOH X . H 5 HOH 173 577 173 HOH HOH X . H 5 HOH 174 578 174 HOH HOH X . H 5 HOH 175 579 175 HOH HOH X . H 5 HOH 176 580 176 HOH HOH X . H 5 HOH 177 581 177 HOH HOH X . H 5 HOH 178 582 178 HOH HOH X . H 5 HOH 179 583 179 HOH HOH X . H 5 HOH 180 584 180 HOH HOH X . H 5 HOH 181 585 181 HOH HOH X . H 5 HOH 182 586 182 HOH HOH X . H 5 HOH 183 587 183 HOH HOH X . H 5 HOH 184 588 184 HOH HOH X . H 5 HOH 185 589 185 HOH HOH X . H 5 HOH 186 590 186 HOH HOH X . H 5 HOH 187 591 187 HOH HOH X . H 5 HOH 188 592 188 HOH HOH X . H 5 HOH 189 593 189 HOH HOH X . H 5 HOH 190 594 190 HOH HOH X . H 5 HOH 191 595 191 HOH HOH X . H 5 HOH 192 596 192 HOH HOH X . H 5 HOH 193 597 193 HOH HOH X . H 5 HOH 194 598 194 HOH HOH X . H 5 HOH 195 599 195 HOH HOH X . H 5 HOH 196 600 196 HOH HOH X . H 5 HOH 197 601 197 HOH HOH X . H 5 HOH 198 602 198 HOH HOH X . H 5 HOH 199 603 199 HOH HOH X . H 5 HOH 200 604 200 HOH HOH X . H 5 HOH 201 605 201 HOH HOH X . H 5 HOH 202 606 202 HOH HOH X . H 5 HOH 203 607 203 HOH HOH X . H 5 HOH 204 608 204 HOH HOH X . H 5 HOH 205 609 205 HOH HOH X . H 5 HOH 206 610 206 HOH HOH X . H 5 HOH 207 611 207 HOH HOH X . H 5 HOH 208 612 208 HOH HOH X . H 5 HOH 209 613 209 HOH HOH X . H 5 HOH 210 614 210 HOH HOH X . H 5 HOH 211 615 211 HOH HOH X . H 5 HOH 212 616 212 HOH HOH X . H 5 HOH 213 617 213 HOH HOH X . H 5 HOH 214 618 214 HOH HOH X . H 5 HOH 215 619 215 HOH HOH X . H 5 HOH 216 620 216 HOH HOH X . H 5 HOH 217 621 217 HOH HOH X . H 5 HOH 218 622 218 HOH HOH X . H 5 HOH 219 623 219 HOH HOH X . H 5 HOH 220 624 220 HOH HOH X . H 5 HOH 221 625 221 HOH HOH X . H 5 HOH 222 626 222 HOH HOH X . H 5 HOH 223 627 223 HOH HOH X . H 5 HOH 224 628 224 HOH HOH X . H 5 HOH 225 629 225 HOH HOH X . H 5 HOH 226 630 226 HOH HOH X . H 5 HOH 227 631 227 HOH HOH X . H 5 HOH 228 632 228 HOH HOH X . H 5 HOH 229 633 229 HOH HOH X . H 5 HOH 230 634 230 HOH HOH X . H 5 HOH 231 635 231 HOH HOH X . H 5 HOH 232 636 232 HOH HOH X . H 5 HOH 233 637 233 HOH HOH X . H 5 HOH 234 638 234 HOH HOH X . H 5 HOH 235 639 235 HOH HOH X . H 5 HOH 236 640 236 HOH HOH X . H 5 HOH 237 641 237 HOH HOH X . H 5 HOH 238 642 238 HOH HOH X . H 5 HOH 239 643 239 HOH HOH X . H 5 HOH 240 644 240 HOH HOH X . H 5 HOH 241 645 241 HOH HOH X . H 5 HOH 242 646 242 HOH HOH X . H 5 HOH 243 647 243 HOH HOH X . H 5 HOH 244 648 244 HOH HOH X . H 5 HOH 245 649 245 HOH HOH X . H 5 HOH 246 650 246 HOH HOH X . H 5 HOH 247 651 247 HOH HOH X . H 5 HOH 248 652 248 HOH HOH X . H 5 HOH 249 653 249 HOH HOH X . H 5 HOH 250 654 250 HOH HOH X . H 5 HOH 251 655 251 HOH HOH X . H 5 HOH 252 656 252 HOH HOH X . H 5 HOH 253 657 253 HOH HOH X . H 5 HOH 254 658 254 HOH HOH X . H 5 HOH 255 659 255 HOH HOH X . H 5 HOH 256 660 256 HOH HOH X . H 5 HOH 257 661 257 HOH HOH X . H 5 HOH 258 662 258 HOH HOH X . H 5 HOH 259 663 259 HOH HOH X . H 5 HOH 260 664 260 HOH HOH X . H 5 HOH 261 665 261 HOH HOH X . H 5 HOH 262 666 262 HOH HOH X . H 5 HOH 263 667 263 HOH HOH X . H 5 HOH 264 668 264 HOH HOH X . H 5 HOH 265 669 265 HOH HOH X . H 5 HOH 266 670 266 HOH HOH X . H 5 HOH 267 671 267 HOH HOH X . H 5 HOH 268 672 268 HOH HOH X . H 5 HOH 269 673 269 HOH HOH X . H 5 HOH 270 674 270 HOH HOH X . H 5 HOH 271 675 271 HOH HOH X . H 5 HOH 272 676 272 HOH HOH X . H 5 HOH 273 677 273 HOH HOH X . H 5 HOH 274 678 274 HOH HOH X . H 5 HOH 275 679 275 HOH HOH X . H 5 HOH 276 680 276 HOH HOH X . H 5 HOH 277 681 277 HOH HOH X . H 5 HOH 278 682 278 HOH HOH X . H 5 HOH 279 683 279 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 17 X MSE 17 ? MET SELENOMETHIONINE 2 A MSE 89 X MSE 89 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 83.1 ? 2 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 158.0 ? 3 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 77.3 ? 4 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? A TYR 46 ? X TYR 46 ? 1_555 98.2 ? 5 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? A TYR 46 ? X TYR 46 ? 1_555 83.8 ? 6 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? A TYR 46 ? X TYR 46 ? 1_555 89.7 ? 7 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 75.6 ? 8 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 158.4 ? 9 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 124.3 ? 10 O ? A TYR 46 ? X TYR 46 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 95.5 ? 11 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 125.9 ? 12 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 149.6 ? 13 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 75.3 ? 14 O ? A TYR 46 ? X TYR 46 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 83.2 ? 15 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 50.7 ? 16 O ? A ASP 10 ? X ASP 10 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 91.7 ? 17 OE2 ? A GLU 12 ? X GLU 12 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 94.6 ? 18 OD1 ? A ASN 44 ? X ASN 44 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 80.1 ? 19 O ? A TYR 46 ? X TYR 46 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 169.7 ? 20 OD1 ? A ASP 176 ? X ASP 176 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 89.8 ? 21 OD2 ? A ASP 176 ? X ASP 176 ? 1_555 CA ? C CA . ? X CA 300 ? 1_555 O ? H HOH . ? X HOH 432 ? 1_555 93.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-22 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-11 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Atomic model' 5 5 'Structure model' 'Data collection' 6 5 'Structure model' 'Database references' 7 5 'Structure model' 'Derived calculations' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' atom_site 3 5 'Structure model' chem_comp 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_entity_branch 8 5 'Structure model' pdbx_entity_branch_descriptor 9 5 'Structure model' pdbx_entity_branch_link 10 5 'Structure model' pdbx_entity_branch_list 11 5 'Structure model' pdbx_entity_nonpoly 12 5 'Structure model' pdbx_nonpoly_scheme 13 5 'Structure model' pdbx_struct_assembly_gen 14 5 'Structure model' pdbx_struct_conn_angle 15 5 'Structure model' struct_asym 16 5 'Structure model' struct_conn 17 5 'Structure model' struct_ref_seq_dif 18 5 'Structure model' struct_site 19 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_atom_site.auth_asym_id' 4 5 'Structure model' '_atom_site.auth_seq_id' 5 5 'Structure model' '_atom_site.label_asym_id' 6 5 'Structure model' '_atom_site.label_entity_id' 7 5 'Structure model' '_chem_comp.name' 8 5 'Structure model' '_chem_comp.type' 9 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.value' 24 5 'Structure model' '_struct_conn.pdbx_dist_value' 25 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 26 5 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 27 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 28 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 30 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 34 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 37 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 41 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 MAR345 'data collection' . ? 2 XDS 'data scaling' . ? 3 SOLVE phasing . ? 4 RESOLVE phasing . ? 5 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE According to the author there is a mistake in the sequence database ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 X _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 114 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 A _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 X _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 499 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 NE2 _pdbx_validate_symm_contact.auth_asym_id_1 X _pdbx_validate_symm_contact.auth_comp_id_1 GLN _pdbx_validate_symm_contact.auth_seq_id_1 76 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 A _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 X _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 413 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 X _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 49 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 X _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 49 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH2 _pdbx_validate_rmsd_angle.auth_asym_id_3 X _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 49 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 116.60 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation -3.70 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS X 28 ? ? 59.60 -106.26 2 1 ASN X 44 ? ? -154.38 88.80 3 1 TRP X 60 ? ? -151.83 79.04 4 1 TRP X 113 ? ? 58.12 83.40 5 1 ALA X 156 ? ? -92.00 39.78 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 X GLU 1 ? A GLU 1 2 1 Y 1 X SER 2 ? A SER 2 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 MAN 1 A MAN 1 Z MAN 1 n B 2 BMA 2 A BMA 2 Z MAN 2 n B 2 BMA 3 A BMA 3 Z MAN 3 n B 2 BMA 4 A BMA 4 Z MAN 4 n B 2 BMA 5 A BMA 5 Z MAN 5 n B 2 BMA 6 A BMA 6 Z MAN 6 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpb1-4DManpb1-4DManpb1-4DManpb1-4DManpb1-4DManpa1-ROH 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,6,5/[a1122h-1a_1-5][a1122h-1b_1-5]/1-2-2-2-2-2/a4-b1_b4-c1_c4-d1_d4-e1_e4-f1' WURCS PDB2Glycan 1.1.0 3 2 '[][a-D-Manp]{[(4+1)][b-D-Manp]{[(4+1)][b-D-Manp]{[(4+1)][b-D-Manp]{[(4+1)][b-D-Manp]{[(4+1)][b-D-Manp]{}}}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 BMA C1 O1 1 MAN O4 HO4 sing ? 2 2 3 BMA C1 O1 2 BMA O4 HO4 sing ? 3 2 4 BMA C1 O1 3 BMA O4 HO4 sing ? 4 2 5 BMA C1 O1 4 BMA O4 HO4 sing ? 5 2 6 BMA C1 O1 5 BMA O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 MAN 1 n 2 BMA 2 n 2 BMA 3 n 2 BMA 4 n 2 BMA 5 n 2 BMA 6 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 1,2-ETHANEDIOL EDO 5 water HOH #