HEADER TRANSFERASE 24-JUL-97 1PMR TITLE LIPOYL DOMAIN FROM THE DIHYDROLIPOYL SUCCINYLTRANSFERASE COMPONENT OF TITLE 2 THE 2-OXOGLUTARATE DEHYDROGENASE MULTIENZYME COMPLEX OF ESCHERICHIA TITLE 3 COLI, NMR, 25 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROLIPOYL SUCCINYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIPOYL DOMAIN; COMPND 5 EC: 2.3.1.61; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELL_LINE: BL21; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11C KEYWDS TRANSFERASE, 2-OXOGLUTARATE DEHYDROGENASE, LIPOYL DOMAIN, COMPLEX, KEYWDS 2 GLYCOLYSIS EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR P.M.RICAUD,M.J.HOWARD,E.L.ROBERTS,R.W.BROADHURST,R.N.PERHAM REVDAT 3 29-NOV-17 1PMR 1 REMARK HELIX REVDAT 2 24-FEB-09 1PMR 1 VERSN REVDAT 1 29-JUL-98 1PMR 0 JRNL AUTH P.M.RICAUD,M.J.HOWARD,E.L.ROBERTS,R.W.BROADHURST,R.N.PERHAM JRNL TITL THREE-DIMENSIONAL STRUCTURE OF THE LIPOYL DOMAIN FROM THE JRNL TITL 2 DIHYDROLIPOYL SUCCINYLTRANSFERASE COMPONENT OF THE JRNL TITL 3 2-OXOGLUTARATE DEHYDROGENASE MULTIENZYME COMPLEX OF JRNL TITL 4 ESCHERICHIA COLI. JRNL REF J.MOL.BIOL. V. 264 179 1996 JRNL REFN ISSN 0022-2836 JRNL PMID 8950276 JRNL DOI 10.1006/JMBI.1996.0632 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PMR COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175741. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 72 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 21 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 85.96 -69.43 REMARK 500 1 LEU A 6 -157.75 -134.17 REMARK 500 1 LEU A 10 100.44 -39.98 REMARK 500 1 PRO A 11 -84.13 -79.08 REMARK 500 1 GLU A 12 33.91 -148.83 REMARK 500 1 ALA A 15 36.61 -90.00 REMARK 500 1 ASP A 16 -174.75 70.86 REMARK 500 1 ALA A 17 -164.87 -170.46 REMARK 500 1 TRP A 22 -167.54 -69.55 REMARK 500 1 HIS A 23 23.65 -152.68 REMARK 500 1 ASP A 28 -163.52 -65.50 REMARK 500 1 ALA A 29 82.21 -163.43 REMARK 500 1 VAL A 31 -106.99 -133.61 REMARK 500 1 ASP A 33 96.06 153.70 REMARK 500 1 VAL A 37 168.81 -39.04 REMARK 500 1 THR A 41 44.39 -102.55 REMARK 500 1 ASP A 42 65.61 76.49 REMARK 500 1 LYS A 43 -25.80 86.51 REMARK 500 1 ALA A 50 -160.50 -75.31 REMARK 500 1 ALA A 52 165.11 159.43 REMARK 500 1 ASP A 53 -86.50 69.81 REMARK 500 1 ILE A 55 98.66 -41.93 REMARK 500 1 LEU A 56 98.91 -54.92 REMARK 500 1 ASP A 62 109.41 -53.60 REMARK 500 1 GLU A 63 109.14 8.63 REMARK 500 1 THR A 68 -149.43 -139.68 REMARK 500 1 ARG A 70 -21.95 159.40 REMARK 500 1 LEU A 76 -101.65 -112.36 REMARK 500 2 LEU A 6 -148.22 -131.12 REMARK 500 2 ASP A 9 45.52 -95.25 REMARK 500 2 GLU A 12 33.11 73.67 REMARK 500 2 SER A 13 98.41 55.05 REMARK 500 2 VAL A 14 72.60 -161.43 REMARK 500 2 ASP A 16 165.75 170.98 REMARK 500 2 ALA A 17 -165.65 -164.65 REMARK 500 2 THR A 21 116.91 -164.41 REMARK 500 2 TRP A 22 -167.50 -68.35 REMARK 500 2 HIS A 23 23.65 -152.47 REMARK 500 2 LYS A 25 177.39 -59.55 REMARK 500 2 PRO A 26 96.02 -69.80 REMARK 500 2 ASP A 28 -154.66 -57.95 REMARK 500 2 ALA A 29 87.34 -163.89 REMARK 500 2 VAL A 31 -60.71 -135.76 REMARK 500 2 ASP A 33 80.45 146.68 REMARK 500 2 VAL A 35 159.31 -41.97 REMARK 500 2 VAL A 37 168.82 -38.87 REMARK 500 2 ASP A 42 83.55 176.77 REMARK 500 2 LYS A 43 -26.93 86.12 REMARK 500 2 ALA A 50 -165.94 -73.83 REMARK 500 2 ALA A 52 161.50 159.58 REMARK 500 REMARK 500 THIS ENTRY HAS 739 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 32 0.20 SIDE CHAIN REMARK 500 1 ARG A 70 0.09 SIDE CHAIN REMARK 500 1 ARG A 75 0.25 SIDE CHAIN REMARK 500 1 ARG A 77 0.20 SIDE CHAIN REMARK 500 2 ARG A 32 0.22 SIDE CHAIN REMARK 500 2 ARG A 70 0.20 SIDE CHAIN REMARK 500 2 ARG A 75 0.25 SIDE CHAIN REMARK 500 2 ARG A 77 0.30 SIDE CHAIN REMARK 500 3 ARG A 32 0.30 SIDE CHAIN REMARK 500 3 ARG A 70 0.19 SIDE CHAIN REMARK 500 3 ARG A 75 0.15 SIDE CHAIN REMARK 500 3 ARG A 77 0.29 SIDE CHAIN REMARK 500 4 ARG A 32 0.31 SIDE CHAIN REMARK 500 4 ARG A 70 0.26 SIDE CHAIN REMARK 500 4 ARG A 75 0.27 SIDE CHAIN REMARK 500 4 ARG A 77 0.09 SIDE CHAIN REMARK 500 5 ARG A 32 0.30 SIDE CHAIN REMARK 500 5 ARG A 70 0.20 SIDE CHAIN REMARK 500 5 ARG A 75 0.24 SIDE CHAIN REMARK 500 5 ARG A 77 0.29 SIDE CHAIN REMARK 500 6 ARG A 32 0.29 SIDE CHAIN REMARK 500 6 ARG A 70 0.32 SIDE CHAIN REMARK 500 6 ARG A 75 0.28 SIDE CHAIN REMARK 500 6 ARG A 77 0.32 SIDE CHAIN REMARK 500 7 ARG A 32 0.24 SIDE CHAIN REMARK 500 7 ARG A 70 0.10 SIDE CHAIN REMARK 500 7 ARG A 75 0.20 SIDE CHAIN REMARK 500 7 ARG A 77 0.20 SIDE CHAIN REMARK 500 8 ARG A 32 0.31 SIDE CHAIN REMARK 500 8 ARG A 70 0.20 SIDE CHAIN REMARK 500 8 ARG A 75 0.31 SIDE CHAIN REMARK 500 9 ARG A 32 0.30 SIDE CHAIN REMARK 500 9 ARG A 70 0.20 SIDE CHAIN REMARK 500 9 ARG A 75 0.32 SIDE CHAIN REMARK 500 9 ARG A 77 0.28 SIDE CHAIN REMARK 500 10 ARG A 70 0.29 SIDE CHAIN REMARK 500 10 ARG A 75 0.32 SIDE CHAIN REMARK 500 10 ARG A 77 0.14 SIDE CHAIN REMARK 500 11 ARG A 32 0.27 SIDE CHAIN REMARK 500 11 ARG A 75 0.31 SIDE CHAIN REMARK 500 11 ARG A 77 0.28 SIDE CHAIN REMARK 500 12 ARG A 32 0.30 SIDE CHAIN REMARK 500 12 ARG A 70 0.32 SIDE CHAIN REMARK 500 12 ARG A 75 0.25 SIDE CHAIN REMARK 500 12 ARG A 77 0.20 SIDE CHAIN REMARK 500 13 ARG A 32 0.23 SIDE CHAIN REMARK 500 13 ARG A 70 0.32 SIDE CHAIN REMARK 500 13 ARG A 75 0.26 SIDE CHAIN REMARK 500 13 ARG A 77 0.29 SIDE CHAIN REMARK 500 14 ARG A 32 0.27 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 96 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1PMR A 1 80 UNP P07016 ODO2_ECOLI 1 80 SEQRES 1 A 80 SER SER VAL ASP ILE LEU VAL PRO ASP LEU PRO GLU SER SEQRES 2 A 80 VAL ALA ASP ALA THR VAL ALA THR TRP HIS LYS LYS PRO SEQRES 3 A 80 GLY ASP ALA VAL VAL ARG ASP GLU VAL LEU VAL GLU ILE SEQRES 4 A 80 GLU THR ASP LYS VAL VAL LEU GLU VAL PRO ALA SER ALA SEQRES 5 A 80 ASP GLY ILE LEU ASP ALA VAL LEU GLU ASP GLU GLY THR SEQRES 6 A 80 THR VAL THR SER ARG GLN ILE LEU GLY ARG LEU ARG GLU SEQRES 7 A 80 GLY ASN SHEET 1 S1 4 GLY A 27 VAL A 30 0 SHEET 2 S1 4 GLY A 54 VAL A 59 -1 SHEET 3 S1 4 GLN A 71 LEU A 76 -1 SHEET 4 S1 4 VAL A 3 VAL A 7 -1 SHEET 1 S2 4 VAL A 44 ALA A 50 0 SHEET 2 S2 4 GLU A 34 THR A 41 -1 SHEET 3 S2 4 ALA A 17 TRP A 22 -1 SHEET 4 S2 4 THR A 65 THR A 68 -1 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1