HEADER TOXIN 16-JUN-03 1PP6 TITLE VVA2 (STRIP CRYSTAL FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: VOLVATOXIN A2; COMPND 3 CHAIN: A, B, C, D, E SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VOLVARIELLA VOLVACEA; SOURCE 3 ORGANISM_TAXID: 36659 KEYWDS VOLVATOXIN A2, STRIP CRYSTAL FORM, TOXIN EXPDTA X-RAY DIFFRACTION AUTHOR S.-C.LIN,Y.-C.LO,J.-Y.LIN,Y.-C.LIAW REVDAT 4 25-OCT-23 1PP6 1 REMARK REVDAT 3 24-FEB-09 1PP6 1 VERSN REVDAT 2 05-OCT-04 1PP6 1 JRNL REVDAT 1 24-AUG-04 1PP6 0 JRNL AUTH S.-C.LIN,Y.-C.LO,J.-Y.LIN,Y.-C.LIAW JRNL TITL CRYSTAL STRUCTURES AND ELECTRON MICROGRAPHS OF FUNGAL JRNL TITL 2 VOLVATOXIN A2 JRNL REF J.MOL.BIOL. V. 343 477 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15451675 JRNL DOI 10.1016/J.JMB.2004.08.045 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.5 REMARK 3 NUMBER OF REFLECTIONS : 18485 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.348 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1817 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.35 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2028 REMARK 3 BIN R VALUE (WORKING SET) : 0.3780 REMARK 3 BIN FREE R VALUE : 0.4820 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 236 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7674 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 12 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 82.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 20.06000 REMARK 3 B22 (A**2) : -9.95000 REMARK 3 B33 (A**2) : -10.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 22.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM SIGMAA (A) : 0.45 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.64 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.88 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 35.69 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PP6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019473. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 133.0 REMARK 200 PH : 6.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL12B2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0446 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : ADSC REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19692 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 28.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 15.00 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1PP0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CACODYLATE, PEG 8000, GLYCEROL, REMARK 280 PH 6.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.33950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 ASP A 4 REMARK 465 ASN A 199 REMARK 465 ALA B 1001 REMARK 465 SER B 1002 REMARK 465 ASP B 1003 REMARK 465 ASP B 1004 REMARK 465 ASN B 1199 REMARK 465 ALA C 2001 REMARK 465 SER C 2002 REMARK 465 ASP C 2003 REMARK 465 ASP C 2004 REMARK 465 ASN C 2199 REMARK 465 ALA D 3001 REMARK 465 SER D 3002 REMARK 465 ASP D 3003 REMARK 465 ASP D 3004 REMARK 465 ASN D 3199 REMARK 465 ALA E 4001 REMARK 465 SER E 4002 REMARK 465 ASP E 4003 REMARK 465 ASP E 4004 REMARK 465 ASN E 4069 REMARK 465 GLN E 4070 REMARK 465 GLN E 4071 REMARK 465 SER E 4072 REMARK 465 GLN E 4073 REMARK 465 GLU E 4074 REMARK 465 VAL E 4075 REMARK 465 GLY E 4076 REMARK 465 ASN E 4199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS C 2026 N SER C 2028 2.17 REMARK 500 O PHE D 3090 N ALA D 3092 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO D3147 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 PRO E4014 C - N - CA ANGL. DEV. = 9.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 89.67 -66.32 REMARK 500 LYS A 33 36.61 -86.43 REMARK 500 LEU A 34 138.88 -31.92 REMARK 500 GLU A 35 130.44 170.58 REMARK 500 GLN A 36 49.95 72.30 REMARK 500 LYS A 47 -62.97 -90.10 REMARK 500 ASP A 51 67.32 -68.67 REMARK 500 ASN A 52 -61.20 -175.96 REMARK 500 TYR A 53 123.86 -24.03 REMARK 500 LYS A 62 152.44 172.60 REMARK 500 ASP A 64 158.45 174.45 REMARK 500 GLN A 70 150.81 -35.81 REMARK 500 GLN A 71 156.95 176.33 REMARK 500 VAL A 75 -88.47 -18.51 REMARK 500 VAL A 93 -70.20 -149.42 REMARK 500 LEU A 96 -160.30 60.23 REMARK 500 GLU A 113 -31.46 -37.86 REMARK 500 ASN A 125 -51.20 -29.67 REMARK 500 LYS A 127 -7.43 -52.71 REMARK 500 ALA A 146 53.28 -169.79 REMARK 500 ASP A 162 68.38 -60.29 REMARK 500 GLU A 164 -62.21 -105.00 REMARK 500 THR A 176 143.57 -38.11 REMARK 500 ALA A 197 109.70 -54.34 REMARK 500 GLN B1012 60.80 -113.40 REMARK 500 GLU B1015 -52.21 -27.25 REMARK 500 PHE B1027 -70.73 -80.22 REMARK 500 TYR B1031 50.11 -153.64 REMARK 500 LEU B1034 100.96 -51.85 REMARK 500 ASP B1037 -2.37 65.88 REMARK 500 ALA B1049 -60.22 -27.30 REMARK 500 ASN B1052 -19.39 -170.32 REMARK 500 ASP B1057 45.90 -92.00 REMARK 500 LEU B1058 131.59 173.46 REMARK 500 HIS B1087 12.81 -61.93 REMARK 500 PHE B1090 24.26 -142.17 REMARK 500 ALA B1091 -12.23 -45.82 REMARK 500 VAL B1093 -32.02 -150.43 REMARK 500 LEU B1096 -136.97 41.76 REMARK 500 THR B1108 28.61 -64.14 REMARK 500 ASN B1109 18.17 -163.33 REMARK 500 LEU B1110 -17.64 -49.01 REMARK 500 SER B1116 172.43 -40.75 REMARK 500 ASN B1125 -50.97 54.30 REMARK 500 VAL B1126 -85.97 -62.08 REMARK 500 LYS B1127 -1.88 -51.90 REMARK 500 SER B1148 6.01 -67.73 REMARK 500 ASP B1162 37.81 -77.28 REMARK 500 GLU B1164 -82.50 -67.63 REMARK 500 LYS B1166 1.68 -56.98 REMARK 500 REMARK 500 THIS ENTRY HAS 143 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR D3063 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PP0 RELATED DB: PDB REMARK 900 VVA2 (INGOT CRYSTAL FORM) REMARK 900 RELATED ID: 1VCY RELATED DB: PDB REMARK 900 VVA2 ISOFORM REMARK 900 RELATED ID: 1VGF RELATED DB: PDB REMARK 900 VVA2 (DIAMOND CRYSTAL FORM) DBREF 1PP6 A 1 199 UNP Q6USC4 Q6USC4_9AGAR 19 217 DBREF 1PP6 B 1001 1199 UNP Q6USC4 Q6USC4_9AGAR 19 217 DBREF 1PP6 C 2001 2199 UNP Q6USC4 Q6USC4_9AGAR 19 217 DBREF 1PP6 D 3001 3199 UNP Q6USC4 Q6USC4_9AGAR 19 217 DBREF 1PP6 E 4001 4199 UNP Q6USC4 Q6USC4_9AGAR 19 217 SEQRES 1 A 199 ALA SER ASP ASP ASN VAL PHE GLN PRO VAL ASP GLN LEU SEQRES 2 A 199 PRO GLU ASP LEU ILE PRO SER SER ILE GLN VAL LEU LYS SEQRES 3 A 199 PHE SER GLY LYS TYR LEU LYS LEU GLU GLN ASP LYS ALA SEQRES 4 A 199 TYR PHE ASP TRP PRO GLY PHE LYS THR ALA ILE ASP ASN SEQRES 5 A 199 TYR THR GLY GLU ASP LEU SER PHE ASP LYS TYR ASP GLN SEQRES 6 A 199 SER THR ILE ASN GLN GLN SER GLN GLU VAL GLY ALA MET SEQRES 7 A 199 VAL ASP LYS ILE ALA LYS PHE LEU HIS ASP ALA PHE ALA SEQRES 8 A 199 ALA VAL VAL ASP LEU SER LYS LEU ALA ALA ILE ILE LEU SEQRES 9 A 199 ASN THR PHE THR ASN LEU GLU GLU GLU SER SER SER GLY SEQRES 10 A 199 PHE LEU GLN PHE ASN THR ASN ASN VAL LYS LYS ASN SER SEQRES 11 A 199 SER TRP GLU TYR ARG VAL LEU PHE SER VAL PRO PHE GLY SEQRES 12 A 199 ASP ASN ALA PRO SER TYR PHE TYR SER LEU VAL THR THR SEQRES 13 A 199 ILE LEU ILE THR ALA ASP ILE GLU GLU LYS THR GLY TRP SEQRES 14 A 199 TRP GLY LEU THR SER SER THR LYS LYS ASN PHE ALA VAL SEQRES 15 A 199 GLN ILE ASP ALA LEU GLU LEU VAL VAL LYS LYS GLY PHE SEQRES 16 A 199 LYS ALA PRO ASN SEQRES 1 B 199 ALA SER ASP ASP ASN VAL PHE GLN PRO VAL ASP GLN LEU SEQRES 2 B 199 PRO GLU ASP LEU ILE PRO SER SER ILE GLN VAL LEU LYS SEQRES 3 B 199 PHE SER GLY LYS TYR LEU LYS LEU GLU GLN ASP LYS ALA SEQRES 4 B 199 TYR PHE ASP TRP PRO GLY PHE LYS THR ALA ILE ASP ASN SEQRES 5 B 199 TYR THR GLY GLU ASP LEU SER PHE ASP LYS TYR ASP GLN SEQRES 6 B 199 SER THR ILE ASN GLN GLN SER GLN GLU VAL GLY ALA MET SEQRES 7 B 199 VAL ASP LYS ILE ALA LYS PHE LEU HIS ASP ALA PHE ALA SEQRES 8 B 199 ALA VAL VAL ASP LEU SER LYS LEU ALA ALA ILE ILE LEU SEQRES 9 B 199 ASN THR PHE THR ASN LEU GLU GLU GLU SER SER SER GLY SEQRES 10 B 199 PHE LEU GLN PHE ASN THR ASN ASN VAL LYS LYS ASN SER SEQRES 11 B 199 SER TRP GLU TYR ARG VAL LEU PHE SER VAL PRO PHE GLY SEQRES 12 B 199 ASP ASN ALA PRO SER TYR PHE TYR SER LEU VAL THR THR SEQRES 13 B 199 ILE LEU ILE THR ALA ASP ILE GLU GLU LYS THR GLY TRP SEQRES 14 B 199 TRP GLY LEU THR SER SER THR LYS LYS ASN PHE ALA VAL SEQRES 15 B 199 GLN ILE ASP ALA LEU GLU LEU VAL VAL LYS LYS GLY PHE SEQRES 16 B 199 LYS ALA PRO ASN SEQRES 1 C 199 ALA SER ASP ASP ASN VAL PHE GLN PRO VAL ASP GLN LEU SEQRES 2 C 199 PRO GLU ASP LEU ILE PRO SER SER ILE GLN VAL LEU LYS SEQRES 3 C 199 PHE SER GLY LYS TYR LEU LYS LEU GLU GLN ASP LYS ALA SEQRES 4 C 199 TYR PHE ASP TRP PRO GLY PHE LYS THR ALA ILE ASP ASN SEQRES 5 C 199 TYR THR GLY GLU ASP LEU SER PHE ASP LYS TYR ASP GLN SEQRES 6 C 199 SER THR ILE ASN GLN GLN SER GLN GLU VAL GLY ALA MET SEQRES 7 C 199 VAL ASP LYS ILE ALA LYS PHE LEU HIS ASP ALA PHE ALA SEQRES 8 C 199 ALA VAL VAL ASP LEU SER LYS LEU ALA ALA ILE ILE LEU SEQRES 9 C 199 ASN THR PHE THR ASN LEU GLU GLU GLU SER SER SER GLY SEQRES 10 C 199 PHE LEU GLN PHE ASN THR ASN ASN VAL LYS LYS ASN SER SEQRES 11 C 199 SER TRP GLU TYR ARG VAL LEU PHE SER VAL PRO PHE GLY SEQRES 12 C 199 ASP ASN ALA PRO SER TYR PHE TYR SER LEU VAL THR THR SEQRES 13 C 199 ILE LEU ILE THR ALA ASP ILE GLU GLU LYS THR GLY TRP SEQRES 14 C 199 TRP GLY LEU THR SER SER THR LYS LYS ASN PHE ALA VAL SEQRES 15 C 199 GLN ILE ASP ALA LEU GLU LEU VAL VAL LYS LYS GLY PHE SEQRES 16 C 199 LYS ALA PRO ASN SEQRES 1 D 199 ALA SER ASP ASP ASN VAL PHE GLN PRO VAL ASP GLN LEU SEQRES 2 D 199 PRO GLU ASP LEU ILE PRO SER SER ILE GLN VAL LEU LYS SEQRES 3 D 199 PHE SER GLY LYS TYR LEU LYS LEU GLU GLN ASP LYS ALA SEQRES 4 D 199 TYR PHE ASP TRP PRO GLY PHE LYS THR ALA ILE ASP ASN SEQRES 5 D 199 TYR THR GLY GLU ASP LEU SER PHE ASP LYS TYR ASP GLN SEQRES 6 D 199 SER THR ILE ASN GLN GLN SER GLN GLU VAL GLY ALA MET SEQRES 7 D 199 VAL ASP LYS ILE ALA LYS PHE LEU HIS ASP ALA PHE ALA SEQRES 8 D 199 ALA VAL VAL ASP LEU SER LYS LEU ALA ALA ILE ILE LEU SEQRES 9 D 199 ASN THR PHE THR ASN LEU GLU GLU GLU SER SER SER GLY SEQRES 10 D 199 PHE LEU GLN PHE ASN THR ASN ASN VAL LYS LYS ASN SER SEQRES 11 D 199 SER TRP GLU TYR ARG VAL LEU PHE SER VAL PRO PHE GLY SEQRES 12 D 199 ASP ASN ALA PRO SER TYR PHE TYR SER LEU VAL THR THR SEQRES 13 D 199 ILE LEU ILE THR ALA ASP ILE GLU GLU LYS THR GLY TRP SEQRES 14 D 199 TRP GLY LEU THR SER SER THR LYS LYS ASN PHE ALA VAL SEQRES 15 D 199 GLN ILE ASP ALA LEU GLU LEU VAL VAL LYS LYS GLY PHE SEQRES 16 D 199 LYS ALA PRO ASN SEQRES 1 E 199 ALA SER ASP ASP ASN VAL PHE GLN PRO VAL ASP GLN LEU SEQRES 2 E 199 PRO GLU ASP LEU ILE PRO SER SER ILE GLN VAL LEU LYS SEQRES 3 E 199 PHE SER GLY LYS TYR LEU LYS LEU GLU GLN ASP LYS ALA SEQRES 4 E 199 TYR PHE ASP TRP PRO GLY PHE LYS THR ALA ILE ASP ASN SEQRES 5 E 199 TYR THR GLY GLU ASP LEU SER PHE ASP LYS TYR ASP GLN SEQRES 6 E 199 SER THR ILE ASN GLN GLN SER GLN GLU VAL GLY ALA MET SEQRES 7 E 199 VAL ASP LYS ILE ALA LYS PHE LEU HIS ASP ALA PHE ALA SEQRES 8 E 199 ALA VAL VAL ASP LEU SER LYS LEU ALA ALA ILE ILE LEU SEQRES 9 E 199 ASN THR PHE THR ASN LEU GLU GLU GLU SER SER SER GLY SEQRES 10 E 199 PHE LEU GLN PHE ASN THR ASN ASN VAL LYS LYS ASN SER SEQRES 11 E 199 SER TRP GLU TYR ARG VAL LEU PHE SER VAL PRO PHE GLY SEQRES 12 E 199 ASP ASN ALA PRO SER TYR PHE TYR SER LEU VAL THR THR SEQRES 13 E 199 ILE LEU ILE THR ALA ASP ILE GLU GLU LYS THR GLY TRP SEQRES 14 E 199 TRP GLY LEU THR SER SER THR LYS LYS ASN PHE ALA VAL SEQRES 15 E 199 GLN ILE ASP ALA LEU GLU LEU VAL VAL LYS LYS GLY PHE SEQRES 16 E 199 LYS ALA PRO ASN FORMUL 6 HOH *12(H2 O) HELIX 1 1 LEU A 17 LYS A 30 1 14 HELIX 2 2 PRO A 44 ASP A 51 1 8 HELIX 3 3 VAL A 75 PHE A 90 1 16 HELIX 4 4 LEU A 99 ASN A 109 1 11 HELIX 5 5 ASN A 109 SER A 114 1 6 HELIX 6 6 GLU A 165 TRP A 170 5 6 HELIX 7 7 PRO B 1014 ASP B 1016 5 3 HELIX 8 8 LEU B 1017 LYS B 1030 1 14 HELIX 9 9 ASP B 1042 ASP B 1051 1 10 HELIX 10 10 VAL B 1075 PHE B 1090 1 16 HELIX 11 11 ASP B 1095 THR B 1108 1 14 HELIX 12 12 ASN B 1109 SER B 1114 1 6 HELIX 13 13 PRO C 2014 ASP C 2016 5 3 HELIX 14 14 LEU C 2017 PHE C 2027 1 11 HELIX 15 15 ASP C 2042 ASP C 2051 1 10 HELIX 16 16 VAL C 2075 ALA C 2091 1 17 HELIX 17 17 ALA C 2092 VAL C 2094 5 3 HELIX 18 18 LYS C 2098 THR C 2106 1 9 HELIX 19 19 PHE C 2107 LEU C 2110 5 4 HELIX 20 20 PRO D 3014 ASP D 3016 5 3 HELIX 21 21 LEU D 3017 LYS D 3030 1 14 HELIX 22 22 ASP D 3042 ILE D 3050 1 9 HELIX 23 23 GLU D 3074 PHE D 3090 1 17 HELIX 24 24 SER D 3097 ILE D 3103 1 7 HELIX 25 25 LYS D 3166 TRP D 3170 5 5 HELIX 26 26 PRO E 4014 ASP E 4016 5 3 HELIX 27 27 LEU E 4017 LYS E 4030 1 14 HELIX 28 28 PRO E 4044 ALA E 4049 1 6 HELIX 29 29 MET E 4078 PHE E 4090 1 13 HELIX 30 30 LEU E 4096 THR E 4108 1 13 HELIX 31 31 ASN E 4109 SER E 4116 1 8 HELIX 32 32 LYS E 4166 TRP E 4170 5 5 SHEET 1 A11 PRO A 9 ASP A 11 0 SHEET 2 A11 ASN A 129 SER A 139 1 O LEU A 137 N VAL A 10 SHEET 3 A11 LEU A 119 ASN A 124 -1 N GLN A 120 O GLU A 133 SHEET 4 A11 ASN A 129 SER A 139 -1 O ASN A 129 N ASN A 124 SHEET 5 A11 TYR A 149 ALA A 161 -1 N LEU A 153 O PHE A 138 SHEET 6 A11 LYS A 177 LYS A 192 -1 O ALA A 181 N THR A 160 SHEET 7 A11 LEU A 58 LYS A 62 -1 N SER A 59 O VAL A 190 SHEET 8 A11 LYS A 177 LYS A 192 -1 O GLU A 188 N ASP A 61 SHEET 9 A11 GLN A 65 ILE A 68 -1 O SER A 66 N ILE A 184 SHEET 10 A11 LYS A 177 LYS A 192 -1 N VAL A 182 O ILE A 68 SHEET 11 A11 SER A 72 GLU A 74 -1 O GLN A 73 N LYS A 178 SHEET 1 B 7 GLN B1008 ASP B1011 0 SHEET 2 B 7 SER B1130 PRO B1141 1 O ARG B1135 N GLN B1008 SHEET 3 B 7 LEU B1119 THR B1123 -1 O GLN B1120 N GLU B1133 SHEET 4 B 7 SER B1130 PRO B1141 -1 N SER B1131 O ASN B1122 SHEET 5 B 7 TYR B1149 ALA B1161 -1 N TYR B1151 O VAL B1140 SHEET 6 B 7 LYS B1177 LYS B1192 -1 N ALA B1181 O THR B1160 SHEET 7 B 7 LEU B1058 GLU B1074 -1 O SER B1059 N VAL B1190 SHEET 1 C 9 GLN C2008 ASP C2011 0 SHEET 2 C 9 ASN C2129 PRO C2141 1 O ARG C2135 N GLN C2008 SHEET 3 C 9 LEU C2119 GLN C2120 -1 O GLN C2120 N GLU C2133 SHEET 4 C 9 ASN C2129 PRO C2141 -1 N GLU C2133 O GLN C2120 SHEET 5 C 9 THR C2123 ASN C2124 -1 N ASN C2124 O ASN C2129 SHEET 6 C 9 ASN C2129 PRO C2141 -1 O ASN C2129 N ASN C2124 SHEET 7 C 9 TYR C2149 ALA C2161 -1 N TYR C2151 O VAL C2140 SHEET 8 C 9 GLN C2183 LYS C2192 -1 N GLN C2183 O LEU C2158 SHEET 9 C 9 PHE C2060 THR C2067 -1 N ASP C2061 O GLU C2188 SHEET 1 D 2 LEU C2032 LEU C2034 0 SHEET 2 D 2 ALA C2039 PHE C2041 -1 O TYR C2040 N LYS C2033 SHEET 1 E 2 GLN C2071 GLU C2074 0 SHEET 2 E 2 LYS C2177 PHE C2180 -1 N LYS C2178 O GLN C2073 SHEET 1 F 9 PRO D3009 VAL D3010 0 SHEET 2 F 9 SER D3130 PHE D3138 1 O LEU D3137 N VAL D3010 SHEET 3 F 9 LEU D3119 ASN D3122 -1 O GLN D3120 N GLU D3133 SHEET 4 F 9 SER D3130 PHE D3138 -1 O SER D3131 N ASN D3122 SHEET 5 F 9 TYR D3149 ALA D3161 -1 N LEU D3153 O PHE D3138 SHEET 6 F 9 LYS D3178 LYS D3192 -1 O ALA D3181 N THR D3160 SHEET 7 F 9 LEU D3058 THR D3067 -1 N SER D3059 O VAL D3190 SHEET 8 F 9 LYS D3178 LYS D3192 -1 O ILE D3184 N SER D3066 SHEET 9 F 9 GLN D3071 GLN D3073 -1 N GLN D3071 O PHE D3180 SHEET 1 G 2 LEU D3032 LYS D3033 0 SHEET 2 G 2 TYR D3040 PHE D3041 -1 O TYR D3040 N LYS D3033 SHEET 1 H 7 GLN E4008 ASP E4011 0 SHEET 2 H 7 SER E4130 PRO E4141 1 O ARG E4135 N GLN E4008 SHEET 3 H 7 LEU E4119 THR E4123 -1 N GLN E4120 O GLU E4133 SHEET 4 H 7 SER E4130 PRO E4141 -1 N SER E4131 O ASN E4122 SHEET 5 H 7 TYR E4149 ALA E4161 -1 N TYR E4151 O VAL E4140 SHEET 6 H 7 ALA E4181 LYS E4192 -1 O ALA E4181 N THR E4160 SHEET 7 H 7 LEU E4058 ILE E4068 -1 N SER E4059 O VAL E4190 CRYST1 71.672 80.679 107.853 90.00 105.33 90.00 P 1 21 1 10 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013952 0.000000 0.003824 0.00000 SCALE2 0.000000 0.012395 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009614 0.00000