data_1PPG # _entry.id 1PPG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PPG WWPDB D_1000175786 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PPG _pdbx_database_status.recvd_initial_deposition_date 1991-10-24 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bode, W.' 1 'Wei, A-Z.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The refined 2.3 A crystal structure of human leukocyte elastase in a complex with a valine chloromethyl ketone inhibitor.' 'FEBS Lett.' 234 367 373 1988 FEBLAL NE 0014-5793 0165 ? 3391280 '10.1016/0014-5793(88)80118-2' 1 ;X-Ray Crystal Structure of the Complex of Human Leukocyte Elastase (Pmn Elastase) and the Third Domain of the Turkey Ovomucoid Inhibitor ; 'Embo J.' 5 2453 ? 1986 EMJODG UK 0261-4189 0897 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wei, A.Z.' 1 ? primary 'Mayr, I.' 2 ? primary 'Bode, W.' 3 ? 1 'Bode, W.' 4 ? 1 'Wei, A.-Z.' 5 ? 1 'Huber, R.' 6 ? 1 'Meyer, E.' 7 ? 1 'Travis, J.' 8 ? 1 'Neumann, S.' 9 ? # _cell.entry_id 1PPG _cell.length_a 74.200 _cell.length_b 74.200 _cell.length_c 70.600 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1PPG _symmetry.space_group_name_H-M 'P 63' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HUMAN LEUKOCYTE ELASTASE' 23318.982 1 3.4.21.37 ? ? ? 2 polymer syn 'MEO-SUCCINYL-ALA-ALA-PRO-VAL CHLOROMETHYLKETONE' 507.021 1 ? ? ? ? 3 branched man ;beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1422.297 1 ? ? ? ? 4 branched man ;alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-2)-beta-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose ; 1422.297 1 ? ? ? ? 5 water nat water 18.015 192 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ ; ;IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVTSLCRRSNVCTL VRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ ; E ? 2 'polypeptide(L)' no yes '(HMB)AAP(VAI)(0QE)' XAAPXX I ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 VAL n 1 3 GLY n 1 4 GLY n 1 5 ARG n 1 6 ARG n 1 7 ALA n 1 8 ARG n 1 9 PRO n 1 10 HIS n 1 11 ALA n 1 12 TRP n 1 13 PRO n 1 14 PHE n 1 15 MET n 1 16 VAL n 1 17 SER n 1 18 LEU n 1 19 GLN n 1 20 LEU n 1 21 ARG n 1 22 GLY n 1 23 GLY n 1 24 HIS n 1 25 PHE n 1 26 CYS n 1 27 GLY n 1 28 ALA n 1 29 THR n 1 30 LEU n 1 31 ILE n 1 32 ALA n 1 33 PRO n 1 34 ASN n 1 35 PHE n 1 36 VAL n 1 37 MET n 1 38 SER n 1 39 ALA n 1 40 ALA n 1 41 HIS n 1 42 CYS n 1 43 VAL n 1 44 ALA n 1 45 ASN n 1 46 VAL n 1 47 ASN n 1 48 VAL n 1 49 ARG n 1 50 ALA n 1 51 VAL n 1 52 ARG n 1 53 VAL n 1 54 VAL n 1 55 LEU n 1 56 GLY n 1 57 ALA n 1 58 HIS n 1 59 ASN n 1 60 LEU n 1 61 SER n 1 62 ARG n 1 63 ARG n 1 64 GLU n 1 65 PRO n 1 66 THR n 1 67 ARG n 1 68 GLN n 1 69 VAL n 1 70 PHE n 1 71 ALA n 1 72 VAL n 1 73 GLN n 1 74 ARG n 1 75 ILE n 1 76 PHE n 1 77 GLU n 1 78 ASN n 1 79 GLY n 1 80 TYR n 1 81 ASP n 1 82 PRO n 1 83 VAL n 1 84 ASN n 1 85 LEU n 1 86 LEU n 1 87 ASN n 1 88 ASP n 1 89 ILE n 1 90 VAL n 1 91 ILE n 1 92 LEU n 1 93 GLN n 1 94 LEU n 1 95 ASN n 1 96 GLY n 1 97 SER n 1 98 ALA n 1 99 THR n 1 100 ILE n 1 101 ASN n 1 102 ALA n 1 103 ASN n 1 104 VAL n 1 105 GLN n 1 106 VAL n 1 107 ALA n 1 108 GLN n 1 109 LEU n 1 110 PRO n 1 111 ALA n 1 112 GLN n 1 113 GLY n 1 114 ARG n 1 115 ARG n 1 116 LEU n 1 117 GLY n 1 118 ASN n 1 119 GLY n 1 120 VAL n 1 121 GLN n 1 122 CYS n 1 123 LEU n 1 124 ALA n 1 125 MET n 1 126 GLY n 1 127 TRP n 1 128 GLY n 1 129 LEU n 1 130 LEU n 1 131 GLY n 1 132 ARG n 1 133 ASN n 1 134 ARG n 1 135 GLY n 1 136 ILE n 1 137 ALA n 1 138 SER n 1 139 VAL n 1 140 LEU n 1 141 GLN n 1 142 GLU n 1 143 LEU n 1 144 ASN n 1 145 VAL n 1 146 THR n 1 147 VAL n 1 148 VAL n 1 149 THR n 1 150 SER n 1 151 LEU n 1 152 CYS n 1 153 ARG n 1 154 ARG n 1 155 SER n 1 156 ASN n 1 157 VAL n 1 158 CYS n 1 159 THR n 1 160 LEU n 1 161 VAL n 1 162 ARG n 1 163 GLY n 1 164 ARG n 1 165 GLN n 1 166 ALA n 1 167 GLY n 1 168 VAL n 1 169 CYS n 1 170 PHE n 1 171 GLY n 1 172 ASP n 1 173 SER n 1 174 GLY n 1 175 SER n 1 176 PRO n 1 177 LEU n 1 178 VAL n 1 179 CYS n 1 180 ASN n 1 181 GLY n 1 182 LEU n 1 183 ILE n 1 184 HIS n 1 185 GLY n 1 186 ILE n 1 187 ALA n 1 188 SER n 1 189 PHE n 1 190 VAL n 1 191 ARG n 1 192 GLY n 1 193 GLY n 1 194 CYS n 1 195 ALA n 1 196 SER n 1 197 GLY n 1 198 LEU n 1 199 TYR n 1 200 PRO n 1 201 ASP n 1 202 ALA n 1 203 PHE n 1 204 ALA n 1 205 PRO n 1 206 VAL n 1 207 ALA n 1 208 GLN n 1 209 PHE n 1 210 VAL n 1 211 ASN n 1 212 TRP n 1 213 ILE n 1 214 ASP n 1 215 SER n 1 216 ILE n 1 217 ILE n 1 218 GLN n 2 1 HMB n 2 2 ALA n 2 3 ALA n 2 4 PRO n 2 5 VAI n 2 6 0QE n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name HUMAN _entity_src_nat.pdbx_organism_scientific 'HOMO SAPIENS' _entity_src_nat.pdbx_ncbi_taxonomy_id 9606 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 UNP ELNE_HUMAN 1 P08246 1 ;MTLGRRLACLFLACVLPALLLGGTALASEIVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAV RVVLGAHNLSRREPTRQVFAVQRIFENGYDPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLG RNRGIASVLQELNVTVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNGLIHGIASFVRGGCASGLYPDAFAPVAQFVN WIDSIIQRSEDNPCPHPRDPDPASRTH ; ? 2 PDB 1PPG 2 1PPG 1 '(HMB)AAP(VAI)(0QE)' ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PPG E 1 ? 218 ? P08246 30 ? 247 ? 16 243 2 2 1PPG I 1 ? 6 ? 1PPG 1 ? 6 ? 1 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0QE non-polymer . chloromethane 'Chloro Methyl group' 'C H3 Cl' 50.488 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BMA 'D-saccharide, beta linking' . beta-D-mannopyranose ? 'C6 H12 O6' 180.156 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 FUC 'L-saccharide, alpha linking' . alpha-L-fucopyranose ? 'C6 H12 O5' 164.156 GAL 'D-saccharide, beta linking' . beta-D-galactopyranose ? 'C6 H12 O6' 180.156 GLC 'D-saccharide, alpha linking' . alpha-D-glucopyranose ? 'C6 H12 O6' 180.156 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HMB non-polymer . '(4S)-4-hydroxy-4-methoxybutanoic acid' ? 'C5 H10 O4' 134.131 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 NDG 'D-saccharide, alpha linking' . 2-acetamido-2-deoxy-alpha-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAI peptide-like n '(2S)-2-amino-3-methylbutane-1,1-diol' ? 'C5 H13 N O2' 119.162 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PPG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 47.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _refine.entry_id 1PPG _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.3 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.145 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1669 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 192 _refine_hist.number_atoms_solvent 192 _refine_hist.number_atoms_total 2053 _refine_hist.d_res_high 2.3 _refine_hist.d_res_low 8.0 # _struct.entry_id 1PPG _struct.title 'The refined 2.3 angstroms crystal structure of human leukocyte elastase in a complex with a valine chloromethyl ketone inhibitor' _struct.pdbx_descriptor 'HUMAN LEUKOCYTE ELASTASE (HLE) (E.C.3.4.21.37) COMPLEX WITH MEO-SUCCINYL-ALA-ALA-PRO-VAL CHLOROMETHYLACETONE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PPG _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' _struct_keywords.text 'SERINE PROTEINASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? ALA A 44 ? ALA E 55 ALA E 60 5 ? 6 HELX_P HELX_P2 2 ASN A 47 ? VAL A 51 ? ASN E 63 VAL E 64 5 ? 5 HELX_P HELX_P3 3 PRO A 205 ? GLN A 218 ? PRO E 230 GLN E 243 5 'MIXED 3/10 + 3.6/13' 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? E CYS 42 E CYS 58 1_555 ? ? ? ? ? ? ? 2.054 ? ? disulf2 disulf ? ? A CYS 122 SG ? ? ? 1_555 A CYS 179 SG ? ? E CYS 136 E CYS 201 1_555 ? ? ? ? ? ? ? 2.070 ? ? disulf3 disulf ? ? A CYS 152 SG ? ? ? 1_555 A CYS 158 SG ? ? E CYS 168 E CYS 182 1_555 ? ? ? ? ? ? ? 2.041 ? ? disulf4 disulf ? ? A CYS 169 SG ? ? ? 1_555 A CYS 194 SG ? ? E CYS 191 E CYS 220 1_555 ? ? ? ? ? ? ? 2.061 ? ? covale1 covale one ? A HIS 41 NE2 ? ? ? 1_555 B 0QE 6 C1 ? ? E HIS 57 I 0QE 6 1_555 ? ? ? ? ? ? ? 1.662 ? ? covale2 covale one ? A ASN 95 ND2 ? ? ? 1_555 D NAG . C1 ? ? E ASN 109 B NAG 1 1_555 ? ? ? ? ? ? ? 1.502 ? N-Glycosylation covale3 covale one ? A ASN 144 ND2 ? ? ? 1_555 C NAG . C1 ? ? E ASN 159 A NAG 1 1_555 ? ? ? ? ? ? ? 1.495 ? N-Glycosylation covale4 covale one ? A SER 173 OG ? ? ? 1_555 B VAI 5 C ? ? E SER 195 I VAI 5 1_555 ? ? ? ? ? ? ? 1.772 ? ? covale5 covale both ? B HMB 1 C ? ? ? 1_555 B ALA 2 N ? ? I HMB 1 I ALA 2 1_555 ? ? ? ? ? ? ? 1.382 ? ? covale6 covale both ? B PRO 4 C ? ? ? 1_555 B VAI 5 N ? ? I PRO 4 I VAI 5 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale7 covale both ? B VAI 5 C ? ? ? 1_555 B 0QE 6 C1 ? ? I VAI 5 I 0QE 6 1_555 ? ? ? ? ? ? ? 1.511 ? ? covale8 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? A NAG 1 A NAG 2 1_555 ? ? ? ? ? ? ? 1.415 ? ? covale9 covale both ? C NAG . O6 ? ? ? 1_555 C FUC . C1 ? ? A NAG 1 A FUC 8 1_555 ? ? ? ? ? ? ? 1.416 ? ? covale10 covale both ? C NAG . O4 ? ? ? 1_555 C BMA . C1 ? ? A NAG 2 A BMA 3 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale11 covale both ? C BMA . O6 ? ? ? 1_555 C MAN . C1 ? ? A BMA 3 A MAN 4 1_555 ? ? ? ? ? ? ? 1.425 ? ? covale12 covale both ? C BMA . O3 ? ? ? 1_555 C MAN . C1 ? ? A BMA 3 A MAN 7 1_555 ? ? ? ? ? ? ? 1.430 ? ? covale13 covale both ? C MAN . O2 ? ? ? 1_555 C NAG . C1 ? ? A MAN 4 A NAG 5 1_555 ? ? ? ? ? ? ? 1.424 ? ? covale14 covale both ? C NAG . O4 ? ? ? 1_555 C GAL . C1 ? ? A NAG 5 A GAL 6 1_555 ? ? ? ? ? ? ? 1.428 ? ? covale15 covale both ? D NAG . O4 ? ? ? 1_555 D NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.427 ? ? covale16 covale both ? D NAG . O6 ? ? ? 1_555 D FUC . C1 ? ? B NAG 1 B FUC 8 1_555 ? ? ? ? ? ? ? 1.459 ? ? covale17 covale both ? D NAG . O4 ? ? ? 1_555 D BMA . C1 ? ? B NAG 2 B BMA 3 1_555 ? ? ? ? ? ? ? 1.434 ? ? covale18 covale both ? D BMA . O6 ? ? ? 1_555 D BMA . C1 ? ? B BMA 3 B BMA 4 1_555 ? ? ? ? ? ? ? 1.432 ? ? covale19 covale both ? D BMA . O3 ? ? ? 1_555 D MAN . C1 ? ? B BMA 3 B MAN 7 1_555 ? ? ? ? ? ? ? 1.433 ? ? covale20 covale both ? D BMA . O2 ? ? ? 1_555 D NDG . C1 ? ? B BMA 4 B NDG 5 1_555 ? ? ? ? ? ? ? 1.435 ? ? covale21 covale both ? D NDG . O4 ? ? ? 1_555 D GLC . C1 ? ? B NDG 5 B GLC 6 1_555 ? ? ? ? ? ? ? 1.443 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details B1 ? 7 ? B2 ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense B1 1 2 ? anti-parallel B1 2 3 ? anti-parallel B1 3 4 ? anti-parallel B1 4 5 ? anti-parallel B1 5 6 ? anti-parallel B1 6 7 ? anti-parallel B2 1 2 ? anti-parallel B2 2 3 ? anti-parallel B2 3 4 ? anti-parallel B2 4 5 ? anti-parallel B2 5 6 ? anti-parallel B2 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id B1 1 PRO A 13 ? ARG A 21 ? PRO E 28 ARG E 36 B1 2 GLY A 22 ? PRO A 33 ? GLY E 38 PRO E 49 B1 3 ASN A 34 ? SER A 38 ? ASN E 50 SER E 54 B1 4 ASN A 84 ? ASN A 95 ? ASN E 98 ASN E 109 B1 5 SER A 61 ? VAL A 83 ? SER E 74 VAL E 97 B1 6 VAL A 53 ? LEU A 60 ? VAL E 66 LEU E 73 B1 7 PRO A 13 ? ARG A 21 ? PRO E 28 ARG E 36 B2 1 GLY A 119 ? ARG A 132 ? GLY E 133 ARG E 146 B2 2 ASN A 133 ? VAL A 148 ? ASN E 147 VAL E 163 B2 3 VAL A 157 ? LEU A 160 ? VAL E 181 LEU E 184 B2 4 ASP A 201 ? ALA A 204 ? ASP E 226 ALA E 229 B2 5 GLY A 181 ? PHE A 189 ? GLY E 207 PHE E 215 B2 6 SER A 175 ? ASN A 180 ? SER E 197 ASN E 202 B2 7 GLY A 119 ? ARG A 132 ? GLY E 133 ARG E 146 # _database_PDB_matrix.entry_id 1PPG _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.577347 _database_PDB_matrix.origx[1][3] -0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.154694 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] -0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PPG _atom_sites.fract_transf_matrix[1][1] 0.013477 _atom_sites.fract_transf_matrix[1][2] 0.007781 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015562 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014164 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'HMB I 1 HAS WRONG CHIRALITY AT ATOM CG' 2 'NDG B 5 HAS WRONG CHIRALITY AT ATOM C3' 3 'GLC B 6 HAS WRONG CHIRALITY AT ATOM C3' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 16 16 ILE ILE E . n A 1 2 VAL 2 17 17 VAL VAL E . n A 1 3 GLY 3 18 18 GLY GLY E . n A 1 4 GLY 4 19 19 GLY GLY E . n A 1 5 ARG 5 20 20 ARG ARG E . n A 1 6 ARG 6 21 21 ARG ARG E . n A 1 7 ALA 7 22 22 ALA ALA E . n A 1 8 ARG 8 23 23 ARG ARG E . n A 1 9 PRO 9 24 24 PRO PRO E . n A 1 10 HIS 10 25 25 HIS HIS E . n A 1 11 ALA 11 26 26 ALA ALA E . n A 1 12 TRP 12 27 27 TRP TRP E . n A 1 13 PRO 13 28 28 PRO PRO E . n A 1 14 PHE 14 29 29 PHE PHE E . n A 1 15 MET 15 30 30 MET MET E . n A 1 16 VAL 16 31 31 VAL VAL E . n A 1 17 SER 17 32 32 SER SER E . n A 1 18 LEU 18 33 33 LEU LEU E . n A 1 19 GLN 19 34 34 GLN GLN E . n A 1 20 LEU 20 35 35 LEU LEU E . n A 1 21 ARG 21 36 36 ARG ARG E . n A 1 22 GLY 22 38 38 GLY GLY E . n A 1 23 GLY 23 39 39 GLY GLY E . n A 1 24 HIS 24 40 40 HIS HIS E . n A 1 25 PHE 25 41 41 PHE PHE E . n A 1 26 CYS 26 42 42 CYS CYS E . n A 1 27 GLY 27 43 43 GLY GLY E . n A 1 28 ALA 28 44 44 ALA ALA E . n A 1 29 THR 29 45 45 THR THR E . n A 1 30 LEU 30 46 46 LEU LEU E . n A 1 31 ILE 31 47 47 ILE ILE E . n A 1 32 ALA 32 48 48 ALA ALA E . n A 1 33 PRO 33 49 49 PRO PRO E . n A 1 34 ASN 34 50 50 ASN ASN E . n A 1 35 PHE 35 51 51 PHE PHE E . n A 1 36 VAL 36 52 52 VAL VAL E . n A 1 37 MET 37 53 53 MET MET E . n A 1 38 SER 38 54 54 SER SER E . n A 1 39 ALA 39 55 55 ALA ALA E . n A 1 40 ALA 40 56 56 ALA ALA E . n A 1 41 HIS 41 57 57 HIS HIS E . n A 1 42 CYS 42 58 58 CYS CYS E . n A 1 43 VAL 43 59 59 VAL VAL E . n A 1 44 ALA 44 60 60 ALA ALA E . n A 1 45 ASN 45 61 61 ASN ASN E . n A 1 46 VAL 46 62 62 VAL VAL E . n A 1 47 ASN 47 63 63 ASN ASN E . n A 1 48 VAL 48 63 63 VAL VAL E A n A 1 49 ARG 49 63 63 ARG ARG E B n A 1 50 ALA 50 63 63 ALA ALA E C n A 1 51 VAL 51 64 64 VAL VAL E . n A 1 52 ARG 52 65 65 ARG ARG E . n A 1 53 VAL 53 66 66 VAL VAL E . n A 1 54 VAL 54 67 67 VAL VAL E . n A 1 55 LEU 55 68 68 LEU LEU E . n A 1 56 GLY 56 69 69 GLY GLY E . n A 1 57 ALA 57 70 70 ALA ALA E . n A 1 58 HIS 58 71 71 HIS HIS E . n A 1 59 ASN 59 72 72 ASN ASN E . n A 1 60 LEU 60 73 73 LEU LEU E . n A 1 61 SER 61 74 74 SER SER E . n A 1 62 ARG 62 75 75 ARG ARG E . n A 1 63 ARG 63 76 76 ARG ARG E . n A 1 64 GLU 64 77 77 GLU GLU E . n A 1 65 PRO 65 78 78 PRO PRO E . n A 1 66 THR 66 79 79 THR THR E . n A 1 67 ARG 67 80 80 ARG ARG E . n A 1 68 GLN 68 81 81 GLN GLN E . n A 1 69 VAL 69 82 82 VAL VAL E . n A 1 70 PHE 70 83 83 PHE PHE E . n A 1 71 ALA 71 84 84 ALA ALA E . n A 1 72 VAL 72 85 85 VAL VAL E . n A 1 73 GLN 73 86 86 GLN GLN E . n A 1 74 ARG 74 87 87 ARG ARG E . n A 1 75 ILE 75 88 88 ILE ILE E . n A 1 76 PHE 76 89 89 PHE PHE E . n A 1 77 GLU 77 90 90 GLU GLU E . n A 1 78 ASN 78 92 92 ASN ASN E . n A 1 79 GLY 79 93 93 GLY GLY E . n A 1 80 TYR 80 94 94 TYR TYR E . n A 1 81 ASP 81 95 95 ASP ASP E . n A 1 82 PRO 82 96 96 PRO PRO E . n A 1 83 VAL 83 97 97 VAL VAL E . n A 1 84 ASN 84 98 98 ASN ASN E . n A 1 85 LEU 85 99 99 LEU LEU E . n A 1 86 LEU 86 100 100 LEU LEU E . n A 1 87 ASN 87 101 101 ASN ASN E . n A 1 88 ASP 88 102 102 ASP ASP E . n A 1 89 ILE 89 103 103 ILE ILE E . n A 1 90 VAL 90 104 104 VAL VAL E . n A 1 91 ILE 91 105 105 ILE ILE E . n A 1 92 LEU 92 106 106 LEU LEU E . n A 1 93 GLN 93 107 107 GLN GLN E . n A 1 94 LEU 94 108 108 LEU LEU E . n A 1 95 ASN 95 109 109 ASN ASN E . n A 1 96 GLY 96 110 110 GLY GLY E . n A 1 97 SER 97 111 111 SER SER E . n A 1 98 ALA 98 112 112 ALA ALA E . n A 1 99 THR 99 113 113 THR THR E . n A 1 100 ILE 100 114 114 ILE ILE E . n A 1 101 ASN 101 115 115 ASN ASN E . n A 1 102 ALA 102 116 116 ALA ALA E . n A 1 103 ASN 103 117 117 ASN ASN E . n A 1 104 VAL 104 118 118 VAL VAL E . n A 1 105 GLN 105 119 119 GLN GLN E . n A 1 106 VAL 106 120 120 VAL VAL E . n A 1 107 ALA 107 121 121 ALA ALA E . n A 1 108 GLN 108 122 122 GLN GLN E . n A 1 109 LEU 109 123 123 LEU LEU E . n A 1 110 PRO 110 124 124 PRO PRO E . n A 1 111 ALA 111 125 125 ALA ALA E . n A 1 112 GLN 112 126 126 GLN GLN E . n A 1 113 GLY 113 127 127 GLY GLY E . n A 1 114 ARG 114 128 128 ARG ARG E . n A 1 115 ARG 115 129 129 ARG ARG E . n A 1 116 LEU 116 130 130 LEU LEU E . n A 1 117 GLY 117 131 131 GLY GLY E . n A 1 118 ASN 118 132 132 ASN ASN E . n A 1 119 GLY 119 133 133 GLY GLY E . n A 1 120 VAL 120 134 134 VAL VAL E . n A 1 121 GLN 121 135 135 GLN GLN E . n A 1 122 CYS 122 136 136 CYS CYS E . n A 1 123 LEU 123 137 137 LEU LEU E . n A 1 124 ALA 124 138 138 ALA ALA E . n A 1 125 MET 125 139 139 MET MET E . n A 1 126 GLY 126 140 140 GLY GLY E . n A 1 127 TRP 127 141 141 TRP TRP E . n A 1 128 GLY 128 142 142 GLY GLY E . n A 1 129 LEU 129 143 143 LEU LEU E . n A 1 130 LEU 130 144 144 LEU LEU E . n A 1 131 GLY 131 145 145 GLY GLY E . n A 1 132 ARG 132 146 146 ARG ARG E . n A 1 133 ASN 133 147 147 ASN ASN E . n A 1 134 ARG 134 148 148 ARG ARG E . n A 1 135 GLY 135 150 150 GLY GLY E . n A 1 136 ILE 136 151 151 ILE ILE E . n A 1 137 ALA 137 152 152 ALA ALA E . n A 1 138 SER 138 153 153 SER SER E . n A 1 139 VAL 139 154 154 VAL VAL E . n A 1 140 LEU 140 155 155 LEU LEU E . n A 1 141 GLN 141 156 156 GLN GLN E . n A 1 142 GLU 142 157 157 GLU GLU E . n A 1 143 LEU 143 158 158 LEU LEU E . n A 1 144 ASN 144 159 159 ASN ASN E . n A 1 145 VAL 145 160 160 VAL VAL E . n A 1 146 THR 146 161 161 THR THR E . n A 1 147 VAL 147 162 162 VAL VAL E . n A 1 148 VAL 148 163 163 VAL VAL E . n A 1 149 THR 149 164 164 THR THR E . n A 1 150 SER 150 165 165 SER SER E . n A 1 151 LEU 151 166 166 LEU LEU E . n A 1 152 CYS 152 168 168 CYS CYS E . n A 1 153 ARG 153 177 177 ARG ARG E . n A 1 154 ARG 154 178 178 ARG ARG E . n A 1 155 SER 155 179 179 SER SER E . n A 1 156 ASN 156 180 180 ASN ASN E . n A 1 157 VAL 157 181 181 VAL VAL E . n A 1 158 CYS 158 182 182 CYS CYS E . n A 1 159 THR 159 183 183 THR THR E . n A 1 160 LEU 160 184 184 LEU LEU E . n A 1 161 VAL 161 185 185 VAL VAL E . n A 1 162 ARG 162 186 186 ARG ARG E . n A 1 163 GLY 163 186 186 GLY GLY E A n A 1 164 ARG 164 186 186 ARG ARG E B n A 1 165 GLN 165 187 187 GLN GLN E . n A 1 166 ALA 166 188 188 ALA ALA E . n A 1 167 GLY 167 189 189 GLY GLY E . n A 1 168 VAL 168 190 190 VAL VAL E . n A 1 169 CYS 169 191 191 CYS CYS E . n A 1 170 PHE 170 192 192 PHE PHE E . n A 1 171 GLY 171 193 193 GLY GLY E . n A 1 172 ASP 172 194 194 ASP ASP E . n A 1 173 SER 173 195 195 SER SER E . n A 1 174 GLY 174 196 196 GLY GLY E . n A 1 175 SER 175 197 197 SER SER E . n A 1 176 PRO 176 198 198 PRO PRO E . n A 1 177 LEU 177 199 199 LEU LEU E . n A 1 178 VAL 178 200 200 VAL VAL E . n A 1 179 CYS 179 201 201 CYS CYS E . n A 1 180 ASN 180 202 202 ASN ASN E . n A 1 181 GLY 181 207 207 GLY GLY E . n A 1 182 LEU 182 208 208 LEU LEU E . n A 1 183 ILE 183 209 209 ILE ILE E . n A 1 184 HIS 184 210 210 HIS HIS E . n A 1 185 GLY 185 211 211 GLY GLY E . n A 1 186 ILE 186 212 212 ILE ILE E . n A 1 187 ALA 187 213 213 ALA ALA E . n A 1 188 SER 188 214 214 SER SER E . n A 1 189 PHE 189 215 215 PHE PHE E . n A 1 190 VAL 190 216 216 VAL VAL E . n A 1 191 ARG 191 217 217 ARG ARG E . n A 1 192 GLY 192 218 218 GLY GLY E . n A 1 193 GLY 193 219 219 GLY GLY E . n A 1 194 CYS 194 220 220 CYS CYS E . n A 1 195 ALA 195 220 220 ALA ALA E A n A 1 196 SER 196 221 221 SER SER E . n A 1 197 GLY 197 222 222 GLY GLY E . n A 1 198 LEU 198 223 223 LEU LEU E . n A 1 199 TYR 199 224 224 TYR TYR E . n A 1 200 PRO 200 225 225 PRO PRO E . n A 1 201 ASP 201 226 226 ASP ASP E . n A 1 202 ALA 202 227 227 ALA ALA E . n A 1 203 PHE 203 228 228 PHE PHE E . n A 1 204 ALA 204 229 229 ALA ALA E . n A 1 205 PRO 205 230 230 PRO PRO E . n A 1 206 VAL 206 231 231 VAL VAL E . n A 1 207 ALA 207 232 232 ALA ALA E . n A 1 208 GLN 208 233 233 GLN GLN E . n A 1 209 PHE 209 234 234 PHE PHE E . n A 1 210 VAL 210 235 235 VAL VAL E . n A 1 211 ASN 211 236 236 ASN ASN E . n A 1 212 TRP 212 237 237 TRP TRP E . n A 1 213 ILE 213 238 238 ILE ILE E . n A 1 214 ASP 214 239 239 ASP ASP E . n A 1 215 SER 215 240 240 SER SER E . n A 1 216 ILE 216 241 241 ILE ILE E . n A 1 217 ILE 217 242 242 ILE ILE E . n A 1 218 GLN 218 243 243 GLN GLN E . n B 2 1 HMB 1 1 14 HMB HMB I . n B 2 2 ALA 2 2 15 ALA ALA I . n B 2 3 ALA 3 3 16 ALA ALA I . n B 2 4 PRO 4 4 17 PRO PRO I . n B 2 5 VAI 5 5 18 VAI VAL I . n B 2 6 0QE 6 6 18 0QE 0QE I . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 HOH 1 503 503 HOH HOH E . E 5 HOH 2 505 505 HOH HOH E . E 5 HOH 3 506 506 HOH HOH E . E 5 HOH 4 508 508 HOH HOH E . E 5 HOH 5 509 509 HOH HOH E . E 5 HOH 6 513 513 HOH HOH E . E 5 HOH 7 514 514 HOH HOH E . E 5 HOH 8 516 516 HOH HOH E . E 5 HOH 9 518 518 HOH HOH E . E 5 HOH 10 520 520 HOH HOH E . E 5 HOH 11 523 523 HOH HOH E . E 5 HOH 12 524 524 HOH HOH E . E 5 HOH 13 526 526 HOH HOH E . E 5 HOH 14 527 527 HOH HOH E . E 5 HOH 15 528 528 HOH HOH E . E 5 HOH 16 530 530 HOH HOH E . E 5 HOH 17 532 532 HOH HOH E . E 5 HOH 18 533 533 HOH HOH E . E 5 HOH 19 537 537 HOH HOH E . E 5 HOH 20 539 539 HOH HOH E . E 5 HOH 21 541 541 HOH HOH E . E 5 HOH 22 547 547 HOH HOH E . E 5 HOH 23 548 548 HOH HOH E . E 5 HOH 24 549 549 HOH HOH E . E 5 HOH 25 550 550 HOH HOH E . E 5 HOH 26 552 552 HOH HOH E . E 5 HOH 27 554 554 HOH HOH E . E 5 HOH 28 557 557 HOH HOH E . E 5 HOH 29 560 560 HOH HOH E . E 5 HOH 30 561 561 HOH HOH E . E 5 HOH 31 564 564 HOH HOH E . E 5 HOH 32 566 566 HOH HOH E . E 5 HOH 33 567 567 HOH HOH E . E 5 HOH 34 568 568 HOH HOH E . E 5 HOH 35 570 570 HOH HOH E . E 5 HOH 36 571 571 HOH HOH E . E 5 HOH 37 572 572 HOH HOH E . E 5 HOH 38 573 573 HOH HOH E . E 5 HOH 39 574 574 HOH HOH E . E 5 HOH 40 592 592 HOH HOH E . E 5 HOH 41 593 593 HOH HOH E . E 5 HOH 42 594 594 HOH HOH E . E 5 HOH 43 595 595 HOH HOH E . E 5 HOH 44 598 598 HOH HOH E . E 5 HOH 45 599 599 HOH HOH E . E 5 HOH 46 601 601 HOH HOH E . E 5 HOH 47 602 602 HOH HOH E . E 5 HOH 48 604 604 HOH HOH E . E 5 HOH 49 605 605 HOH HOH E . E 5 HOH 50 613 613 HOH HOH E . E 5 HOH 51 616 616 HOH HOH E . E 5 HOH 52 620 620 HOH HOH E . E 5 HOH 53 621 621 HOH HOH E . E 5 HOH 54 622 622 HOH HOH E . E 5 HOH 55 624 624 HOH HOH E . E 5 HOH 56 628 628 HOH HOH E . E 5 HOH 57 629 629 HOH HOH E . E 5 HOH 58 631 631 HOH HOH E . E 5 HOH 59 636 636 HOH HOH E . E 5 HOH 60 650 650 HOH HOH E . E 5 HOH 61 651 651 HOH HOH E . E 5 HOH 62 652 652 HOH HOH E . E 5 HOH 63 653 653 HOH HOH E . E 5 HOH 64 659 659 HOH HOH E . E 5 HOH 65 663 663 HOH HOH E . E 5 HOH 66 671 671 HOH HOH E . E 5 HOH 67 677 677 HOH HOH E . E 5 HOH 68 681 681 HOH HOH E . E 5 HOH 69 688 688 HOH HOH E . E 5 HOH 70 689 689 HOH HOH E . E 5 HOH 71 696 696 HOH HOH E . E 5 HOH 72 697 697 HOH HOH E . E 5 HOH 73 702 702 HOH HOH E . E 5 HOH 74 703 703 HOH HOH E . E 5 HOH 75 708 708 HOH HOH E . E 5 HOH 76 711 711 HOH HOH E . E 5 HOH 77 713 713 HOH HOH E . E 5 HOH 78 715 715 HOH HOH E . E 5 HOH 79 737 737 HOH HOH E . E 5 HOH 80 738 738 HOH HOH E . E 5 HOH 81 739 739 HOH HOH E . E 5 HOH 82 740 740 HOH HOH E . E 5 HOH 83 741 741 HOH HOH E . E 5 HOH 84 742 742 HOH HOH E . E 5 HOH 85 743 743 HOH HOH E . E 5 HOH 86 744 744 HOH HOH E . E 5 HOH 87 745 745 HOH HOH E . E 5 HOH 88 746 746 HOH HOH E . E 5 HOH 89 751 751 HOH HOH E . E 5 HOH 90 753 753 HOH HOH E . E 5 HOH 91 754 754 HOH HOH E . E 5 HOH 92 755 755 HOH HOH E . E 5 HOH 93 756 756 HOH HOH E . E 5 HOH 94 757 757 HOH HOH E . E 5 HOH 95 758 758 HOH HOH E . E 5 HOH 96 762 762 HOH HOH E . E 5 HOH 97 773 773 HOH HOH E . E 5 HOH 98 775 775 HOH HOH E . E 5 HOH 99 776 776 HOH HOH E . E 5 HOH 100 777 777 HOH HOH E . E 5 HOH 101 780 780 HOH HOH E . E 5 HOH 102 781 781 HOH HOH E . E 5 HOH 103 788 788 HOH HOH E . E 5 HOH 104 789 789 HOH HOH E . E 5 HOH 105 791 791 HOH HOH E . E 5 HOH 106 795 795 HOH HOH E . E 5 HOH 107 798 798 HOH HOH E . E 5 HOH 108 804 804 HOH HOH E . E 5 HOH 109 805 805 HOH HOH E . E 5 HOH 110 812 812 HOH HOH E . E 5 HOH 111 816 816 HOH HOH E . E 5 HOH 112 823 823 HOH HOH E . E 5 HOH 113 838 838 HOH HOH E . E 5 HOH 114 842 842 HOH HOH E . E 5 HOH 115 846 846 HOH HOH E . E 5 HOH 116 851 851 HOH HOH E . E 5 HOH 117 853 853 HOH HOH E . E 5 HOH 118 866 866 HOH HOH E . E 5 HOH 119 867 867 HOH HOH E . E 5 HOH 120 877 877 HOH HOH E . E 5 HOH 121 881 881 HOH HOH E . E 5 HOH 122 901 901 HOH HOH E . E 5 HOH 123 902 902 HOH HOH E . E 5 HOH 124 906 906 HOH HOH E . E 5 HOH 125 907 907 HOH HOH E . E 5 HOH 126 914 914 HOH HOH E . E 5 HOH 127 915 915 HOH HOH E . E 5 HOH 128 917 917 HOH HOH E . E 5 HOH 129 922 922 HOH HOH E . E 5 HOH 130 925 925 HOH HOH E . E 5 HOH 131 926 926 HOH HOH E . E 5 HOH 132 927 927 HOH HOH E . E 5 HOH 133 929 929 HOH HOH E . E 5 HOH 134 930 930 HOH HOH E . E 5 HOH 135 936 936 HOH HOH E . E 5 HOH 136 940 940 HOH HOH E . E 5 HOH 137 945 945 HOH HOH E . E 5 HOH 138 946 946 HOH HOH E . E 5 HOH 139 955 955 HOH HOH E . E 5 HOH 140 960 960 HOH HOH E . E 5 HOH 141 965 965 HOH HOH E . E 5 HOH 142 967 967 HOH HOH E . E 5 HOH 143 968 968 HOH HOH E . E 5 HOH 144 972 972 HOH HOH E . E 5 HOH 145 974 974 HOH HOH E . E 5 HOH 146 975 975 HOH HOH E . E 5 HOH 147 976 976 HOH HOH E . E 5 HOH 148 979 979 HOH HOH E . E 5 HOH 149 985 985 HOH HOH E . E 5 HOH 150 987 987 HOH HOH E . E 5 HOH 151 988 988 HOH HOH E . E 5 HOH 152 997 997 HOH HOH E . E 5 HOH 153 1005 1005 HOH HOH E . E 5 HOH 154 1037 1037 HOH HOH E . E 5 HOH 155 1065 1065 HOH HOH E . E 5 HOH 156 1072 1072 HOH HOH E . E 5 HOH 157 1090 1090 HOH HOH E . E 5 HOH 158 1091 1091 HOH HOH E . E 5 HOH 159 1099 1099 HOH HOH E . E 5 HOH 160 1100 1100 HOH HOH E . E 5 HOH 161 1107 1107 HOH HOH E . E 5 HOH 162 1118 1118 HOH HOH E . E 5 HOH 163 1129 1129 HOH HOH E . E 5 HOH 164 1130 1130 HOH HOH E . E 5 HOH 165 1159 1159 HOH HOH E . E 5 HOH 166 1163 1163 HOH HOH E . E 5 HOH 167 1165 1165 HOH HOH E . E 5 HOH 168 1168 1168 HOH HOH E . E 5 HOH 169 1181 1181 HOH HOH E . E 5 HOH 170 1200 1200 HOH HOH E . E 5 HOH 171 1202 1202 HOH HOH E . E 5 HOH 172 1226 1226 HOH HOH E . E 5 HOH 173 1228 1228 HOH HOH E . E 5 HOH 174 1230 1230 HOH HOH E . E 5 HOH 175 1231 1231 HOH HOH E . E 5 HOH 176 1233 1233 HOH HOH E . E 5 HOH 177 1234 1234 HOH HOH E . E 5 HOH 178 1235 1235 HOH HOH E . E 5 HOH 179 1239 1239 HOH HOH E . E 5 HOH 180 1247 1247 HOH HOH E . E 5 HOH 181 1251 1251 HOH HOH E . E 5 HOH 182 1255 1255 HOH HOH E . E 5 HOH 183 1261 1261 HOH HOH E . E 5 HOH 184 1265 1265 HOH HOH E . E 5 HOH 185 1269 1269 HOH HOH E . E 5 HOH 186 1271 1271 HOH HOH E . E 5 HOH 187 1273 1273 HOH HOH E . E 5 HOH 188 1276 1276 HOH HOH E . E 5 HOH 189 1278 1278 HOH HOH E . F 5 HOH 1 581 581 HOH HOH I . F 5 HOH 2 1006 1006 HOH HOH I . F 5 HOH 3 1137 1137 HOH HOH I . # _pdbx_molecule_features.prd_id PRD_000414 _pdbx_molecule_features.name 'Meo-Suc-Ala-Ala-Pro-Val-chloromethyl ketone' _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000414 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 144 E ASN 159 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 95 E ASN 109 ? ASN 'GLYCOSYLATION SITE' 3 B VAI 5 I VAI 5 ? VAL '(2S)-2-AMINO-3-METHYLBUTANE-1,1-DIOL' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? hexameric 6 2 software_defined_assembly PISA dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,3 A,B,C,D,E,F 2 1 A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 5130 ? 2 MORE 54 ? 2 'SSA (A^2)' 10550 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_665 -y+1,x-y+1,z -0.5000000000 -0.8660254038 0.0000000000 37.1000000000 0.8660254038 -0.5000000000 0.0000000000 64.2590849608 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_565 -x+y,-x+1,z -0.5000000000 0.8660254038 0.0000000000 -37.1000000000 -0.8660254038 -0.5000000000 0.0000000000 64.2590849608 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1994-01-31 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-12-12 5 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 5 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Atomic model' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Non-polymer description' 6 3 'Structure model' 'Structure summary' 7 3 'Structure model' 'Version format compliance' 8 4 'Structure model' Other 9 5 'Structure model' Advisory 10 5 'Structure model' 'Atomic model' 11 5 'Structure model' 'Data collection' 12 5 'Structure model' 'Derived calculations' 13 5 'Structure model' Other 14 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' atom_site 2 5 'Structure model' chem_comp 3 5 'Structure model' database_PDB_caveat 4 5 'Structure model' entity 5 5 'Structure model' pdbx_branch_scheme 6 5 'Structure model' pdbx_chem_comp_identifier 7 5 'Structure model' pdbx_database_status 8 5 'Structure model' pdbx_entity_branch 9 5 'Structure model' pdbx_entity_branch_descriptor 10 5 'Structure model' pdbx_entity_branch_link 11 5 'Structure model' pdbx_entity_branch_list 12 5 'Structure model' pdbx_entity_nonpoly 13 5 'Structure model' pdbx_nonpoly_scheme 14 5 'Structure model' pdbx_struct_assembly_gen 15 5 'Structure model' pdbx_unobs_or_zero_occ_atoms 16 5 'Structure model' pdbx_unobs_or_zero_occ_residues 17 5 'Structure model' pdbx_validate_chiral 18 5 'Structure model' pdbx_validate_symm_contact 19 5 'Structure model' struct_asym 20 5 'Structure model' struct_conn 21 5 'Structure model' struct_site 22 5 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_atom_site.B_iso_or_equiv' 2 5 'Structure model' '_atom_site.Cartn_x' 3 5 'Structure model' '_atom_site.Cartn_y' 4 5 'Structure model' '_atom_site.Cartn_z' 5 5 'Structure model' '_atom_site.auth_asym_id' 6 5 'Structure model' '_atom_site.auth_atom_id' 7 5 'Structure model' '_atom_site.auth_comp_id' 8 5 'Structure model' '_atom_site.auth_seq_id' 9 5 'Structure model' '_atom_site.label_asym_id' 10 5 'Structure model' '_atom_site.label_atom_id' 11 5 'Structure model' '_atom_site.label_comp_id' 12 5 'Structure model' '_atom_site.label_entity_id' 13 5 'Structure model' '_atom_site.occupancy' 14 5 'Structure model' '_atom_site.type_symbol' 15 5 'Structure model' '_chem_comp.name' 16 5 'Structure model' '_chem_comp.type' 17 5 'Structure model' '_pdbx_database_status.process_site' 18 5 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 19 5 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 20 5 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 21 5 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_1' 22 5 'Structure model' '_pdbx_validate_symm_contact.auth_asym_id_2' 23 5 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 24 5 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 25 5 'Structure model' '_struct_conn.pdbx_dist_value' 26 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 27 5 'Structure model' '_struct_conn.pdbx_role' 28 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' # _software.name EREF _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # _pdbx_database_remark.id 700 _pdbx_database_remark.text ;SHEET THE SHEETS PRESENTED AS *B1* AND *B2* ON SHEET RECORDS BELOW ARE ACTUALLY SIX-STRANDED BETA-BARRELS. THESE ARE REPRESENTED BY SEVEN-STRANDED SHEETS IN WHICH THE FIRST AND LAST STRANDS ARE IDENTICAL. ; # _pdbx_entry_details.entry_id 1PPG _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.compound_details ;THE UNBOUND FORM OF THE INHIBITOR IS MEO-SUCCINYL-ALA-ALA-PRO-VAL CHLOROMETHYLKETONE. UPON REACTION WITH PROTEIN IT FORMS TWO COVALENT BONDS: 1) A COVALENT BOND TO OG SER 195 FORMING A HEMIKETAL VAI AND 2) A COVALENT BOND TO NE2 OF HIS 57 ; _pdbx_entry_details.source_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OG _pdbx_validate_close_contact.auth_asym_id_1 E _pdbx_validate_close_contact.auth_comp_id_1 SER _pdbx_validate_close_contact.auth_seq_id_1 195 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 C1 _pdbx_validate_close_contact.auth_asym_id_2 I _pdbx_validate_close_contact.auth_comp_id_2 0QE _pdbx_validate_close_contact.auth_seq_id_2 6 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.78 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 CB E VAL 97 ? ? 1_555 C5 A NAG 5 ? ? 4_564 0.32 2 1 CA E VAL 97 ? ? 1_555 C6 A NAG 5 ? ? 4_564 0.62 3 1 C3 A MAN 4 ? ? 1_555 O E HOH 1234 ? ? 4_565 0.74 4 1 CG1 E VAL 97 ? ? 1_555 O5 A NAG 5 ? ? 4_564 0.86 5 1 CG2 E VAL 97 ? ? 1_555 C4 A NAG 5 ? ? 4_564 0.89 6 1 CG2 E VAL 97 ? ? 1_555 C5 A NAG 5 ? ? 4_564 1.23 7 1 CB E VAL 97 ? ? 1_555 C6 A NAG 5 ? ? 4_564 1.33 8 1 C2 A MAN 4 ? ? 1_555 O E HOH 1234 ? ? 4_565 1.34 9 1 O E ASN 147 ? ? 1_555 NE2 E GLN 187 ? ? 2_665 1.35 10 1 N E ASN 98 ? ? 1_555 O6 A NAG 5 ? ? 4_564 1.39 11 1 CB E VAL 97 ? ? 1_555 O5 A NAG 5 ? ? 4_564 1.41 12 1 N E VAL 97 ? ? 1_555 C6 A NAG 5 ? ? 4_564 1.50 13 1 O E HOH 708 ? ? 1_555 O E HOH 838 ? ? 4_565 1.55 14 1 C E VAL 97 ? ? 1_555 C6 A NAG 5 ? ? 4_564 1.56 15 1 O E ALA 116 ? ? 1_555 O4 A MAN 7 ? ? 3_455 1.57 16 1 CG1 E VAL 97 ? ? 1_555 C5 A NAG 5 ? ? 4_564 1.58 17 1 CG2 E VAL 97 ? ? 1_555 C3 A NAG 5 ? ? 4_564 1.59 18 1 CG2 E VAL 97 ? ? 1_555 O4 A NAG 5 ? ? 4_564 1.60 19 1 C E VAL 97 ? ? 1_555 O6 A NAG 5 ? ? 4_564 1.65 20 1 CA E VAL 97 ? ? 1_555 C5 A NAG 5 ? ? 4_564 1.74 21 1 CB E VAL 97 ? ? 1_555 C4 A NAG 5 ? ? 4_564 1.83 22 1 O E VAL 97 ? ? 1_555 C1 A GAL 6 ? ? 4_564 1.84 23 1 O E HIS 25 ? ? 1_555 O3 A MAN 7 ? ? 3_455 1.88 24 1 C4 A MAN 4 ? ? 1_555 O E HOH 1234 ? ? 4_565 1.90 25 1 C1 A MAN 4 ? ? 1_555 O E HOH 1234 ? ? 4_565 1.94 26 1 CA E VAL 97 ? ? 1_555 O6 A NAG 5 ? ? 4_564 1.95 27 1 CA E GLY 150 ? ? 1_555 O E HOH 592 ? ? 2_665 2.03 28 1 O3 A MAN 4 ? ? 1_555 O E HOH 1234 ? ? 4_565 2.05 29 1 O6 A BMA 3 ? ? 1_555 O E HOH 1234 ? ? 4_565 2.06 30 1 CG1 E VAL 97 ? ? 1_555 C6 A NAG 5 ? ? 4_564 2.09 31 1 NH2 E ARG 36 ? ? 1_555 OG1 E THR 164 ? ? 2_665 2.09 32 1 CG1 E VAL 97 ? ? 1_555 C1 A NAG 5 ? ? 4_564 2.11 33 1 CG1 E VAL 97 ? ? 1_555 O6 A NAG 5 ? ? 4_564 2.15 34 1 O2 A GAL 6 ? ? 1_555 O E HOH 1129 ? ? 4_565 2.19 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CE1 E HIS 40 ? ? NE2 E HIS 40 ? ? 1.455 1.333 0.122 0.019 N 2 1 CE1 E HIS 57 ? ? NE2 E HIS 57 ? ? 1.452 1.333 0.119 0.019 N 3 1 NE E ARG 75 ? ? CZ E ARG 75 ? ? 1.407 1.326 0.081 0.013 N 4 1 NE1 E TRP 141 ? ? CE2 E TRP 141 ? ? 1.269 1.371 -0.102 0.013 N 5 1 NE1 E TRP 237 ? ? CE2 E TRP 237 ? ? 1.282 1.371 -0.089 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE E ARG 23 ? ? CZ E ARG 23 ? ? NH1 E ARG 23 ? ? 115.13 120.30 -5.17 0.50 N 2 1 NE E ARG 65 ? ? CZ E ARG 65 ? ? NH2 E ARG 65 ? ? 117.29 120.30 -3.01 0.50 N 3 1 NE E ARG 76 ? ? CZ E ARG 76 ? ? NH2 E ARG 76 ? ? 117.06 120.30 -3.24 0.50 N 4 1 NE E ARG 87 ? ? CZ E ARG 87 ? ? NH2 E ARG 87 ? ? 116.58 120.30 -3.72 0.50 N 5 1 NE E ARG 129 ? ? CZ E ARG 129 ? ? NH1 E ARG 129 ? ? 123.68 120.30 3.38 0.50 N 6 1 NE E ARG 177 ? ? CZ E ARG 177 ? ? NH2 E ARG 177 ? ? 115.37 120.30 -4.93 0.50 N 7 1 CA E VAL 190 ? ? CB E VAL 190 ? ? CG2 E VAL 190 ? ? 120.76 110.90 9.86 1.50 N 8 1 CB E ASP 194 ? ? CG E ASP 194 ? ? OD2 E ASP 194 ? ? 125.23 118.30 6.93 0.90 N 9 1 N E LEU 208 ? ? CA E LEU 208 ? ? CB E LEU 208 ? ? 96.17 110.40 -14.23 2.00 N 10 1 NH1 E ARG 217 ? ? CZ E ARG 217 ? ? NH2 E ARG 217 ? ? 110.15 119.40 -9.25 1.10 N 11 1 NE E ARG 217 ? ? CZ E ARG 217 ? ? NH1 E ARG 217 ? ? 126.10 120.30 5.80 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG E 36 ? ? -16.66 -48.64 2 1 ASN E 61 ? ? 83.99 17.66 3 1 HIS E 71 ? ? -136.98 -64.82 4 1 ASN E 115 ? ? -164.74 -165.31 5 1 ARG E 146 ? ? -54.40 4.30 6 1 ASN E 147 ? ? -149.64 -17.68 7 1 ALA E 213 ? ? -36.41 99.23 8 1 SER E 214 ? ? -104.68 -68.55 9 1 ALA E 220 A ? 72.96 34.12 # loop_ _pdbx_validate_main_chain_plane.id _pdbx_validate_main_chain_plane.PDB_model_num _pdbx_validate_main_chain_plane.auth_comp_id _pdbx_validate_main_chain_plane.auth_asym_id _pdbx_validate_main_chain_plane.auth_seq_id _pdbx_validate_main_chain_plane.PDB_ins_code _pdbx_validate_main_chain_plane.label_alt_id _pdbx_validate_main_chain_plane.improper_torsion_angle 1 1 ALA E 26 ? ? -12.90 2 1 PRO E 28 ? ? -11.64 3 1 LEU E 46 ? ? 11.11 4 1 VAL E 52 ? ? 13.92 5 1 ALA E 60 ? ? 11.12 6 1 ASN E 61 ? ? -11.41 7 1 ASN E 63 ? ? 11.97 8 1 ARG E 63 B ? -18.30 9 1 ALA E 63 C ? 11.20 10 1 GLY E 69 ? ? -11.58 11 1 ALA E 84 ? ? 10.06 12 1 VAL E 104 ? ? -12.62 13 1 GLN E 107 ? ? 11.33 14 1 SER E 111 ? ? 11.95 15 1 GLN E 122 ? ? -10.30 16 1 VAL E 163 ? ? 12.62 17 1 SER E 165 ? ? -11.58 18 1 CYS E 168 ? ? -17.17 19 1 ARG E 178 ? ? -14.00 20 1 VAL E 185 ? ? 14.54 21 1 PRO E 198 ? ? -10.88 22 1 PRO E 225 ? ? -10.90 23 1 PHE E 234 ? ? 15.02 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id E _pdbx_validate_planes.auth_seq_id 217 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.117 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 CG ? I HMB 1 ? PLANAR . 2 1 C3 ? B NDG 5 ? 'WRONG HAND' . 3 1 C3 ? B GLC 6 ? 'WRONG HAND' . # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero C 3 NAG 1 A NAG 1 E NAG 401 n C 3 NAG 2 A NAG 2 E NAG 403 n C 3 BMA 3 A BMA 3 E BMA 404 n C 3 MAN 4 A MAN 4 E MAN 405 n C 3 NAG 5 A NAG 5 E NAG 406 n C 3 GAL 6 A GAL 6 E GAL 407 n C 3 MAN 7 A MAN 7 E MAN 408 n C 3 FUC 8 A FUC 8 E FUC 402 n D 4 NAG 1 B NAG 1 E NAG 411 n D 4 NAG 2 B NAG 2 E NAG 413 n D 4 BMA 3 B BMA 3 E BMA 414 n D 4 BMA 4 B BMA 4 E BMA 415 n D 4 NDG 5 B NDG 5 E NDG 416 n D 4 GLC 6 B GLC 6 E GLC 417 n D 4 MAN 7 B MAN 7 E MAN 418 n D 4 FUC 8 B FUC 8 E FUC 412 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier BMA 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpb BMA 'COMMON NAME' GMML 1.0 b-D-mannopyranose BMA 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Manp BMA 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man FUC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 LFucpa FUC 'COMMON NAME' GMML 1.0 a-L-fucopyranose FUC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-L-Fucp FUC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Fuc GAL 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGalpb GAL 'COMMON NAME' GMML 1.0 b-D-galactopyranose GAL 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-Galp GAL 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Gal GLC 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpa GLC 'COMMON NAME' GMML 1.0 a-D-glucopyranose GLC 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Glcp GLC 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Glc MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc NDG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAca NDG 'COMMON NAME' GMML 1.0 N-acetyl-a-D-glucopyranosamine NDG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-GlcpNAc NDG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 3 oligosaccharide 4 oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 3 'DGalpb1-4DGlcpNAcb1-2DManpa1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 2 3 ;WURCS=2.0/5,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2112h-1b_1-5][a1221m-1a_1-5]/1-1-2-3-3-1-4-5/a4-b1_a6-h1_b4-c1_c3-d1_c6-e1_e2-f1_f4-g1 ; WURCS PDB2Glycan 1.1.0 3 3 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][a-D-Manp]{[(2+1)][b-D-GlcpNAc]{[(4+1)][b-D-Galp]{}}}}}[(6+1)][a-L-Fucp]{}}} ; LINUCS PDB-CARE ? 4 4 'DGlcpa1-4DGlcpNAca1-2DManpb1-6[DManpa1-3]DManpb1-4DGlcpNAcb1-4[LFucpa1-6]DGlcpNAcb1-' 'Glycam Condensed Sequence' GMML 1.0 5 4 ;WURCS=2.0/6,8,7/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5][a2122h-1a_1-5_2*NCC/3=O][a2122h-1a_1-5][a1221m-1a_1-5]/1-1-2-3-2-4-5-6/a4-b1_a6-h1_b4-c1_c3-d1_c6-e1_e2-f1_f4-g1 ; WURCS PDB2Glycan 1.1.0 6 4 ;[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{[(3+1)][a-D-Manp]{}[(6+1)][b-D-Manp]{[(2+1)][a-D-AllpNAc]{[(4+1)][a-D-Allp]{}}}}}[(6+1)][a-L-Fucp]{}}} ; LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 3 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 3 3 BMA C1 O1 2 NAG O4 HO4 sing ? 3 3 4 MAN C1 O1 3 BMA O6 HO6 sing ? 4 3 5 NAG C1 O1 4 MAN O2 HO2 sing ? 5 3 6 GAL C1 O1 5 NAG O4 HO4 sing ? 6 3 7 MAN C1 O1 3 BMA O3 HO3 sing ? 7 3 8 FUC C1 O1 1 NAG O6 HO6 sing ? 8 4 2 NAG C1 O1 1 NAG O4 HO4 sing ? 9 4 3 BMA C1 O1 2 NAG O4 HO4 sing ? 10 4 4 BMA C1 O1 3 BMA O6 HO6 sing ? 11 4 5 NDG C1 O1 4 BMA O2 HO2 sing ? 12 4 6 GLC C1 O1 5 NDG O4 HO4 sing ? 13 4 7 MAN C1 O1 3 BMA O3 HO3 sing ? 14 4 8 FUC C1 O1 1 NAG O6 HO6 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 3 NAG 1 n 3 NAG 2 n 3 BMA 3 n 3 MAN 4 n 3 NAG 5 n 3 GAL 6 n 3 MAN 7 n 3 FUC 8 n 4 NAG 1 n 4 NAG 2 n 4 BMA 3 n 4 BMA 4 n 4 NDG 5 n 4 GLC 6 n 4 MAN 7 n 4 FUC 8 n # _pdbx_entity_nonpoly.entity_id 5 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #