HEADER LYASE 17-JUN-03 1PPY TITLE NATIVE PRECURSOR OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE CAVEAT 1PPY CHIRALITY PROBLEM AT CA OF HIS 17 A COMPND MOL_ID: 1; COMPND 2 MOLECULE: ASPARTATE 1-DECARBOXYLASE PRECURSOR; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ASPARTATE ALPHA-DECARBOXYLASE PRECURSOR; COMPND 5 EC: 4.1.1.11; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: PAND OR B0131 OR C0160 OR Z0142 OR ECS0135 OR SF0128; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: SJ16; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBLUESCRIPT KS KEYWDS DECARBOXYLASE, PANTOTHENATE PATHWAY, INTRAMOLECULAR PROTEIN SELF- KEYWDS 2 PROCESSING, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR F.SCHMITZBERGER,M.L.KILKENNY,C.M.C.LOBLEY,M.E.WEBB,M.VINKOVIC, AUTHOR 2 D.MATAK-VINKOVIC,M.WITTY,D.Y.CHIRGADZE,A.G.SMITH,C.ABELL, AUTHOR 3 T.L.BLUNDELL REVDAT 5 16-AUG-23 1PPY 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1PPY 1 VERSN REVDAT 3 24-FEB-09 1PPY 1 VERSN REVDAT 2 25-NOV-03 1PPY 1 REMARK HEADER REVDAT 1 18-NOV-03 1PPY 0 JRNL AUTH F.SCHMITZBERGER,M.L.KILKENNY,C.M.C.LOBLEY,M.E.WEBB, JRNL AUTH 2 M.VINKOVIC,D.MATAK-VINKOVIC,M.WITTY,D.Y.CHIRGADZE,A.G.SMITH, JRNL AUTH 3 C.ABELL,T.L.BLUNDELL JRNL TITL STRUCTURAL CONSTRAINTS ON PROTEIN SELF-PROCESSING IN JRNL TITL 2 L-ASPARTATE-ALPHA-DECARBOXYLASE JRNL REF EMBO J. V. 22 6193 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 14633979 JRNL DOI 10.1093/EMBOJ/CDG575 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.M.WILLIAMSON,G.M.BROWN REMARK 1 TITL PURIFICATION AND PROPERTIES OF REMARK 1 TITL 2 L-ASPARTATE-ALPHA-DECARBOXYLASE, AN ENZYME THAT CATALYZES REMARK 1 TITL 3 THE FORMATION OF BETA-ALANINE IN ESCHERICHIA COLI REMARK 1 REF J.BIOL.CHEM. V. 254 8074 1979 REMARK 1 REFN ISSN 0021-9258 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.K.RAMJEE,U.GENSCHEL,C.ABELL,A.G.SMITH REMARK 1 TITL ESCHERICHIA COLI L-ASPARTATE-ALPHA-DECARBOXYLASE: PREPROTEIN REMARK 1 TITL 2 PROCESSING AND OBSERVATION OF REACTION INTERMEDIATES BY REMARK 1 TITL 3 ELECTROSPRAY MASS SPECTROMETRY REMARK 1 REF BIOCHEM.J. V. 323 661 1997 REMARK 1 REFN ISSN 0264-6021 REMARK 1 REFERENCE 3 REMARK 1 AUTH A.ALBERT,V.DHANARAJ,U.GENSCHEL,G.KHAN,M.K.RAMJEE,R.PULIDO, REMARK 1 AUTH 2 B.L.SIBANDA,F.VON DELFT,M.WITTY,T.L.BLUNDELL,A.G.SMITH, REMARK 1 AUTH 3 C.ABELL REMARK 1 TITL CRYSTAL STRUCTURE OF ASPARTATE DECARBOXYLASE AT 2.2A REMARK 1 TITL 2 RESOLUTION PROVIDES EVIDENCE FOR AN ESTER IN PROTEIN REMARK 1 TITL 3 SELF-PROCESSING REMARK 1 REF NAT.STRUCT.BIOL. V. 5 289 1998 REMARK 1 REFN ISSN 1072-8368 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 20348 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1183 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1462 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1940 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.2380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1755 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 5 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.99 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.90000 REMARK 3 B22 (A**2) : 0.90000 REMARK 3 B33 (A**2) : -1.35000 REMARK 3 B12 (A**2) : 0.45000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1817 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1651 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2458 ; 1.425 ; 1.931 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3810 ; 0.817 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 231 ; 6.474 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 278 ; 0.085 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2060 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 380 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 323 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2026 ; 0.253 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1125 ; 0.114 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 189 ; 0.192 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 27 ; 0.221 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 89 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 50 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1155 ; 0.652 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1838 ; 1.085 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 662 ; 1.822 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 620 ; 2.897 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 16 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 19 REMARK 3 ORIGIN FOR THE GROUP (A): 53.9577 45.2888 26.4322 REMARK 3 T TENSOR REMARK 3 T11: 0.0654 T22: 0.0682 REMARK 3 T33: 0.0861 T12: -0.0175 REMARK 3 T13: -0.0181 T23: 0.0328 REMARK 3 L TENSOR REMARK 3 L11: 5.3021 L22: 3.9690 REMARK 3 L33: 7.2817 L12: 2.5572 REMARK 3 L13: 4.1268 L23: 4.6283 REMARK 3 S TENSOR REMARK 3 S11: -0.1957 S12: -0.2212 S13: 0.3517 REMARK 3 S21: -0.1745 S22: 0.0283 S23: 0.1349 REMARK 3 S31: -0.3223 S32: 0.0846 S33: 0.1674 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 20 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 64.7555 38.0072 40.0966 REMARK 3 T TENSOR REMARK 3 T11: 0.3689 T22: 0.4316 REMARK 3 T33: 0.2629 T12: -0.0003 REMARK 3 T13: -0.1408 T23: 0.0052 REMARK 3 L TENSOR REMARK 3 L11: 11.9116 L22: 12.6439 REMARK 3 L33: 23.2658 L12: -6.5232 REMARK 3 L13: -0.0422 L23: -2.3636 REMARK 3 S TENSOR REMARK 3 S11: 0.1199 S12: -1.0604 S13: -0.3751 REMARK 3 S21: 1.3780 S22: -0.1007 S23: -0.6382 REMARK 3 S31: 1.0953 S32: 1.8584 S33: -0.0193 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 29 REMARK 3 ORIGIN FOR THE GROUP (A): 56.4985 43.4898 38.1878 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.1769 REMARK 3 T33: 0.0758 T12: 0.0201 REMARK 3 T13: -0.0545 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.7295 L22: 19.3858 REMARK 3 L33: -7.4007 L12: -0.8339 REMARK 3 L13: -0.5909 L23: 5.2552 REMARK 3 S TENSOR REMARK 3 S11: 0.0809 S12: -0.0261 S13: 0.2991 REMARK 3 S21: 0.6011 S22: -0.0670 S23: -0.5774 REMARK 3 S31: 0.5434 S32: 0.1631 S33: -0.0138 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 30 A 36 REMARK 3 ORIGIN FOR THE GROUP (A): 49.8913 44.7009 37.0897 REMARK 3 T TENSOR REMARK 3 T11: 0.0982 T22: 0.1341 REMARK 3 T33: 0.0982 T12: -0.0055 REMARK 3 T13: -0.0015 T23: -0.0321 REMARK 3 L TENSOR REMARK 3 L11: 8.3097 L22: 4.8618 REMARK 3 L33: 9.8464 L12: 1.9132 REMARK 3 L13: 9.2866 L23: -0.2392 REMARK 3 S TENSOR REMARK 3 S11: 0.0441 S12: -0.3523 S13: 0.1387 REMARK 3 S21: 0.0950 S22: -0.1212 S23: 0.3381 REMARK 3 S31: -0.0759 S32: -0.2529 S33: 0.0772 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): 58.2802 42.8599 32.4337 REMARK 3 T TENSOR REMARK 3 T11: 0.0681 T22: 0.1364 REMARK 3 T33: 0.0933 T12: -0.0144 REMARK 3 T13: -0.0507 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.2951 L22: 4.2878 REMARK 3 L33: 2.0435 L12: 0.5277 REMARK 3 L13: 0.8844 L23: 2.4213 REMARK 3 S TENSOR REMARK 3 S11: -0.1165 S12: -0.1042 S13: 0.0518 REMARK 3 S21: 0.0183 S22: 0.1276 S23: -0.0960 REMARK 3 S31: 0.0018 S32: 0.2408 S33: -0.0110 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 72 REMARK 3 ORIGIN FOR THE GROUP (A): 63.8422 44.4439 37.1163 REMARK 3 T TENSOR REMARK 3 T11: 0.0616 T22: 0.2655 REMARK 3 T33: 0.2229 T12: -0.0900 REMARK 3 T13: -0.0533 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 31.8552 L22: 55.4765 REMARK 3 L33: 10.3442 L12: -40.1723 REMARK 3 L13: -4.8580 L23: -1.1487 REMARK 3 S TENSOR REMARK 3 S11: -0.2544 S12: 0.3849 S13: 0.2285 REMARK 3 S21: 0.3278 S22: 0.3858 S23: -1.6509 REMARK 3 S31: 0.3441 S32: 0.9453 S33: -0.1314 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 73 A 77 REMARK 3 ORIGIN FOR THE GROUP (A): 71.3112 40.2224 34.2318 REMARK 3 T TENSOR REMARK 3 T11: 0.3834 T22: 0.4753 REMARK 3 T33: 0.5527 T12: -0.0121 REMARK 3 T13: -0.0653 T23: -0.1889 REMARK 3 L TENSOR REMARK 3 L11: -23.0121 L22: 70.1145 REMARK 3 L33: 59.4149 L12: -40.2582 REMARK 3 L13: 39.1804 L23: -62.2734 REMARK 3 S TENSOR REMARK 3 S11: 0.3226 S12: 0.3648 S13: -0.8147 REMARK 3 S21: 1.1061 S22: -0.4858 S23: -0.3599 REMARK 3 S31: 1.3601 S32: 1.6781 S33: 0.1632 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 78 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 51.0658 47.4890 26.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.1314 T22: 0.1274 REMARK 3 T33: 0.1086 T12: -0.0081 REMARK 3 T13: -0.0261 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 2.7027 L22: 3.0088 REMARK 3 L33: 4.8699 L12: 2.9854 REMARK 3 L13: 3.6554 L23: 3.6434 REMARK 3 S TENSOR REMARK 3 S11: -0.1571 S12: -0.1354 S13: 0.2822 REMARK 3 S21: -0.1620 S22: -0.1273 S23: 0.2301 REMARK 3 S31: -0.3352 S32: -0.1757 S33: 0.2844 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 16 REMARK 3 ORIGIN FOR THE GROUP (A): 55.8738 39.3960 5.5050 REMARK 3 T TENSOR REMARK 3 T11: 0.0846 T22: 0.1301 REMARK 3 T33: 0.1141 T12: -0.0383 REMARK 3 T13: 0.0027 T23: 0.0311 REMARK 3 L TENSOR REMARK 3 L11: 1.4678 L22: 4.9655 REMARK 3 L33: 1.7210 L12: -0.4593 REMARK 3 L13: 0.6377 L23: -0.6330 REMARK 3 S TENSOR REMARK 3 S11: -0.0097 S12: 0.1122 S13: 0.2420 REMARK 3 S21: -0.3386 S22: -0.0640 S23: -0.1643 REMARK 3 S31: -0.1765 S32: 0.2015 S33: 0.0737 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 17 B 26 REMARK 3 ORIGIN FOR THE GROUP (A): 57.3709 56.2744 17.0527 REMARK 3 T TENSOR REMARK 3 T11: 0.4804 T22: 0.4459 REMARK 3 T33: 0.5169 T12: -0.0139 REMARK 3 T13: 0.0056 T23: -0.1547 REMARK 3 L TENSOR REMARK 3 L11: 21.8957 L22: 18.4125 REMARK 3 L33: 55.3038 L12: 12.9930 REMARK 3 L13: -7.2879 L23: -6.1956 REMARK 3 S TENSOR REMARK 3 S11: 1.3746 S12: -2.5592 S13: 1.6125 REMARK 3 S21: 2.5826 S22: -0.5024 S23: -0.1644 REMARK 3 S31: -2.9172 S32: 0.9683 S33: -0.8722 REMARK 3 REMARK 3 TLS GROUP : 11 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 27 B 29 REMARK 3 ORIGIN FOR THE GROUP (A): 51.4354 52.8482 8.5171 REMARK 3 T TENSOR REMARK 3 T11: 0.2224 T22: 0.0452 REMARK 3 T33: 0.2004 T12: -0.0487 REMARK 3 T13: 0.0290 T23: 0.0760 REMARK 3 L TENSOR REMARK 3 L11: 11.4850 L22: 26.0283 REMARK 3 L33: 14.3919 L12: -0.0994 REMARK 3 L13: 8.1329 L23: -3.4383 REMARK 3 S TENSOR REMARK 3 S11: 0.3087 S12: -0.1130 S13: 0.6666 REMARK 3 S21: -0.0643 S22: 0.1056 S23: 0.0507 REMARK 3 S31: -0.5594 S32: -0.3115 S33: -0.4144 REMARK 3 REMARK 3 TLS GROUP : 12 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 30 B 36 REMARK 3 ORIGIN FOR THE GROUP (A): 47.5603 49.4279 4.1371 REMARK 3 T TENSOR REMARK 3 T11: 0.1831 T22: 0.1149 REMARK 3 T33: 0.1736 T12: -0.0141 REMARK 3 T13: -0.0741 T23: 0.0951 REMARK 3 L TENSOR REMARK 3 L11: 0.1345 L22: 6.7228 REMARK 3 L33: 7.4237 L12: 1.1949 REMARK 3 L13: -4.4196 L23: 6.2314 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: 0.6166 S13: 0.4759 REMARK 3 S21: -0.0114 S22: -0.1740 S23: 0.2027 REMARK 3 S31: -0.4200 S32: -0.1409 S33: 0.1283 REMARK 3 REMARK 3 TLS GROUP : 13 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 37 B 68 REMARK 3 ORIGIN FOR THE GROUP (A): 55.3817 48.4697 10.0534 REMARK 3 T TENSOR REMARK 3 T11: 0.1751 T22: 0.0804 REMARK 3 T33: 0.1919 T12: -0.0673 REMARK 3 T13: -0.0482 T23: 0.0324 REMARK 3 L TENSOR REMARK 3 L11: 3.7625 L22: 2.0398 REMARK 3 L33: 3.7844 L12: -0.1101 REMARK 3 L13: -0.4699 L23: -0.7107 REMARK 3 S TENSOR REMARK 3 S11: -0.0404 S12: 0.0936 S13: 0.5629 REMARK 3 S21: -0.1413 S22: -0.0333 S23: -0.2606 REMARK 3 S31: -0.4823 S32: 0.1953 S33: 0.0737 REMARK 3 REMARK 3 TLS GROUP : 14 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 69 B 72 REMARK 3 ORIGIN FOR THE GROUP (A): 57.5809 54.4379 11.6289 REMARK 3 T TENSOR REMARK 3 T11: 0.2949 T22: 0.2127 REMARK 3 T33: 0.3835 T12: -0.1442 REMARK 3 T13: 0.0090 T23: 0.0612 REMARK 3 L TENSOR REMARK 3 L11: 25.3608 L22: 25.9112 REMARK 3 L33: 62.4897 L12: -6.5331 REMARK 3 L13: -3.4069 L23: -13.1538 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: -1.3430 S13: -0.3505 REMARK 3 S21: 1.6394 S22: 0.2448 S23: 0.2685 REMARK 3 S31: -1.4014 S32: 1.5053 S33: -0.2195 REMARK 3 REMARK 3 TLS GROUP : 15 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 73 B 79 REMARK 3 ORIGIN FOR THE GROUP (A): 64.2961 52.8301 17.3697 REMARK 3 T TENSOR REMARK 3 T11: 0.4887 T22: 0.4088 REMARK 3 T33: 0.4678 T12: -0.0781 REMARK 3 T13: -0.0837 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 25.9422 L22: 15.7302 REMARK 3 L33: 78.0330 L12: 20.7855 REMARK 3 L13: 3.2890 L23: -6.4153 REMARK 3 S TENSOR REMARK 3 S11: -0.4315 S12: -0.9139 S13: 2.5836 REMARK 3 S21: 1.3591 S22: 0.1048 S23: -0.0395 REMARK 3 S31: -0.0661 S32: -1.3160 S33: 0.3267 REMARK 3 REMARK 3 TLS GROUP : 16 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 80 B 115 REMARK 3 ORIGIN FOR THE GROUP (A): 54.1637 40.6055 2.7479 REMARK 3 T TENSOR REMARK 3 T11: 0.1396 T22: 0.1472 REMARK 3 T33: 0.1267 T12: -0.0093 REMARK 3 T13: 0.0069 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 3.2061 L22: 7.2614 REMARK 3 L33: 2.3669 L12: 2.2858 REMARK 3 L13: 0.0794 L23: -0.3706 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: 0.3423 S13: 0.3301 REMARK 3 S21: -0.6843 S22: 0.0743 S23: 0.0390 REMARK 3 S31: -0.2576 S32: 0.2121 S33: 0.0164 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PPY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019483. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : OTHER REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5482 REMARK 200 MONOCHROMATOR : YALE MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 62.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 17.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 24.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.01 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.29000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1AW8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NH42SO4, PH 5.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.12867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 144.25733 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 108.19300 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 180.32167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.06433 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 72.12867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 144.25733 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 180.32167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 108.19300 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 36.06433 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATION: X,X-Y,1/6-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 7590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -73.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.06433 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 119 REMARK 465 ALA A 120 REMARK 465 ILE A 121 REMARK 465 PRO A 122 REMARK 465 VAL A 123 REMARK 465 GLN A 124 REMARK 465 VAL A 125 REMARK 465 ALA A 126 REMARK 465 ARG B 116 REMARK 465 THR B 117 REMARK 465 ALA B 118 REMARK 465 LYS B 119 REMARK 465 ALA B 120 REMARK 465 ILE B 121 REMARK 465 PRO B 122 REMARK 465 VAL B 123 REMARK 465 GLN B 124 REMARK 465 VAL B 125 REMARK 465 ALA B 126 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53 CG CD CE NZ REMARK 470 ARG A 102 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 116 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 14 CG CD CE NZ REMARK 470 ASP B 19 CB CG OD1 OD2 REMARK 470 LEU B 20 CG CD1 CD2 REMARK 470 HIS B 21 CB CG ND1 CD2 CE1 NE2 REMARK 470 TYR B 22 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR B 22 OH REMARK 470 LYS B 53 CG CD CE NZ REMARK 470 GLU B 109 CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 330 O HOH A 441 2.02 REMARK 500 O HOH A 435 O HOH A 436 2.11 REMARK 500 O HOH A 439 O HOH A 440 2.15 REMARK 500 O HOH A 342 O HOH A 388 2.16 REMARK 500 O HOH A 385 O HOH A 418 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 288 O HOH A 440 5564 1.63 REMARK 500 O HOH A 363 O HOH B 156 12555 2.09 REMARK 500 OE1 GLU A 23 O HOH B 171 12555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 16 C THR A 16 O 0.183 REMARK 500 HIS A 17 CG HIS A 17 CD2 0.161 REMARK 500 HIS A 17 CE1 HIS A 17 NE2 0.115 REMARK 500 HIS A 17 CA HIS A 17 C 1.700 REMARK 500 CYS A 26 C CYS A 26 O 0.145 REMARK 500 GLU B 23 CD GLU B 23 OE1 0.071 REMARK 500 CYS B 26 C CYS B 26 O 0.154 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 16 O - C - N ANGL. DEV. = -11.9 DEGREES REMARK 500 HIS A 17 CB - CA - C ANGL. DEV. = 41.9 DEGREES REMARK 500 HIS A 17 CB - CG - CD2 ANGL. DEV. = -14.1 DEGREES REMARK 500 HIS A 17 ND1 - CE1 - NE2 ANGL. DEV. = -6.8 DEGREES REMARK 500 HIS A 17 CE1 - NE2 - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 HIS A 17 N - CA - C ANGL. DEV. = -37.2 DEGREES REMARK 500 HIS A 17 CA - C - N ANGL. DEV. = -34.8 DEGREES REMARK 500 ASP A 83 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 17 156.85 71.37 REMARK 500 THR A 57 -145.89 -148.04 REMARK 500 ALA B 18 87.96 -159.03 REMARK 500 LEU B 20 41.59 -95.61 REMARK 500 TYR B 22 143.07 52.90 REMARK 500 ASP B 29 123.63 -34.63 REMARK 500 THR B 57 -147.53 -152.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 HIS A 17 ALA A 18 -121.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 HIS A 17 0.26 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 16 24.92 REMARK 500 HIS A 17 23.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 271 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1AW8 RELATED DB: PDB REMARK 900 PROCESSED STRUCTURE OF PYRUVOYL DEPENDENT ASPARTATE DECARBOXYLASE REMARK 900 RELATED ID: 1PQE RELATED DB: PDB REMARK 900 RELATED ID: 1PQF RELATED DB: PDB REMARK 900 RELATED ID: 1PQH RELATED DB: PDB REMARK 900 RELATED ID: 1PT0 RELATED DB: PDB REMARK 900 RELATED ID: 1PT1 RELATED DB: PDB REMARK 900 RELATED ID: 1PYQ RELATED DB: PDB REMARK 900 RELATED ID: 1PYU RELATED DB: PDB DBREF 1PPY A 1 126 UNP P0A790 PAND_ECOLI 1 126 DBREF 1PPY B 1 126 UNP P0A790 PAND_ECOLI 1 126 SEQADV 1PPY CSX A 78 UNP P0A790 CYS 78 MODIFIED RESIDUE SEQADV 1PPY CSX B 78 UNP P0A790 CYS 78 MODIFIED RESIDUE SEQRES 1 A 126 MET ILE ARG THR MET LEU GLN GLY LYS LEU HIS ARG VAL SEQRES 2 A 126 LYS VAL THR HIS ALA ASP LEU HIS TYR GLU GLY SER CYS SEQRES 3 A 126 ALA ILE ASP GLN ASP PHE LEU ASP ALA ALA GLY ILE LEU SEQRES 4 A 126 GLU ASN GLU ALA ILE ASP ILE TRP ASN VAL THR ASN GLY SEQRES 5 A 126 LYS ARG PHE SER THR TYR ALA ILE ALA ALA GLU ARG GLY SEQRES 6 A 126 SER ARG ILE ILE SER VAL ASN GLY ALA ALA ALA HIS CSX SEQRES 7 A 126 ALA SER VAL GLY ASP ILE VAL ILE ILE ALA SER PHE VAL SEQRES 8 A 126 THR MET PRO ASP GLU GLU ALA ARG THR TRP ARG PRO ASN SEQRES 9 A 126 VAL ALA TYR PHE GLU GLY ASP ASN GLU MET LYS ARG THR SEQRES 10 A 126 ALA LYS ALA ILE PRO VAL GLN VAL ALA SEQRES 1 B 126 MET ILE ARG THR MET LEU GLN GLY LYS LEU HIS ARG VAL SEQRES 2 B 126 LYS VAL THR HIS ALA ASP LEU HIS TYR GLU GLY SER CYS SEQRES 3 B 126 ALA ILE ASP GLN ASP PHE LEU ASP ALA ALA GLY ILE LEU SEQRES 4 B 126 GLU ASN GLU ALA ILE ASP ILE TRP ASN VAL THR ASN GLY SEQRES 5 B 126 LYS ARG PHE SER THR TYR ALA ILE ALA ALA GLU ARG GLY SEQRES 6 B 126 SER ARG ILE ILE SER VAL ASN GLY ALA ALA ALA HIS CSX SEQRES 7 B 126 ALA SER VAL GLY ASP ILE VAL ILE ILE ALA SER PHE VAL SEQRES 8 B 126 THR MET PRO ASP GLU GLU ALA ARG THR TRP ARG PRO ASN SEQRES 9 B 126 VAL ALA TYR PHE GLU GLY ASP ASN GLU MET LYS ARG THR SEQRES 10 B 126 ALA LYS ALA ILE PRO VAL GLN VAL ALA MODRES 1PPY CSX A 78 CYS S-OXY CYSTEINE MODRES 1PPY CSX B 78 CYS S-OXY CYSTEINE HET CSX A 78 7 HET CSX B 78 7 HET SO4 A 271 5 HETNAM CSX S-OXY CYSTEINE HETNAM SO4 SULFATE ION FORMUL 1 CSX 2(C3 H7 N O3 S) FORMUL 3 SO4 O4 S 2- FORMUL 4 HOH *270(H2 O) HELIX 1 1 GLN A 30 GLY A 37 1 8 HELIX 2 2 ALA A 75 ALA A 79 5 5 HELIX 3 3 ASP A 95 THR A 100 1 6 HELIX 4 4 GLN B 30 GLY B 37 1 8 HELIX 5 5 GLY B 73 CSX B 78 5 6 HELIX 6 6 ASP B 95 ARG B 99 1 5 SHEET 1 A 8 ILE A 69 SER A 70 0 SHEET 2 A 8 CYS A 26 ASP A 29 -1 N ALA A 27 O SER A 70 SHEET 3 A 8 ARG A 54 ALA A 62 1 O ALA A 62 N ILE A 28 SHEET 4 A 8 ALA A 43 ASN A 48 -1 N ILE A 46 O PHE A 55 SHEET 5 A 8 ILE A 84 PRO A 94 -1 O ALA A 88 N ASP A 45 SHEET 6 A 8 ILE A 2 LYS A 14 -1 N MET A 5 O VAL A 91 SHEET 7 A 8 ASN A 104 GLU A 109 1 O ALA A 106 N HIS A 11 SHEET 8 A 8 GLU A 113 LYS A 115 -1 O LYS A 115 N TYR A 107 SHEET 1 B 8 ILE B 69 VAL B 71 0 SHEET 2 B 8 CYS B 26 ASP B 29 -1 N ALA B 27 O SER B 70 SHEET 3 B 8 ARG B 54 ALA B 62 1 O ILE B 60 N ILE B 28 SHEET 4 B 8 ALA B 43 ASN B 48 -1 N ILE B 46 O PHE B 55 SHEET 5 B 8 ILE B 84 PRO B 94 -1 O ALA B 88 N ASP B 45 SHEET 6 B 8 ILE B 2 LYS B 14 -1 N VAL B 13 O VAL B 85 SHEET 7 B 8 ASN B 104 GLU B 109 1 O ALA B 106 N HIS B 11 SHEET 8 B 8 GLU B 113 MET B 114 -1 O GLU B 113 N GLU B 109 LINK C HIS A 77 N CSX A 78 1555 1555 1.34 LINK C CSX A 78 N ALA A 79 1555 1555 1.33 LINK C HIS B 77 N CSX B 78 1555 1555 1.34 LINK C CSX B 78 N ALA B 79 1555 1555 1.33 CISPEP 1 TYR B 22 GLU B 23 0 7.79 SITE 1 AC1 9 HIS A 21 TYR A 22 GLU A 23 GLY A 73 SITE 2 AC1 9 ALA A 74 HOH A 443 HIS B 11 ARG B 12 SITE 3 AC1 9 HOH B 172 CRYST1 70.983 70.983 216.386 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014088 0.008134 0.000000 0.00000 SCALE2 0.000000 0.016267 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004621 0.00000