HEADER CELL CYCLE 19-JUN-03 1PQS TITLE SOLUTION STRUCTURE OF THE C-TERMINAL OPCA DOMAIN OF YCDC24P COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELL DIVISION CONTROL PROTEIN 24; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL OPCA DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: CDC24P; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS ALPHA AND BETA PROTEIN, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.LEITNER,M.WAHL,D.LABUDDE,A.DIEHL,P.SCHMIEDER,J.R.PIRES,M.FOSSI, AUTHOR 2 M.LEIDERT,G.KRAUSE,H.OSCHKINAT REVDAT 3 02-MAR-22 1PQS 1 REMARK REVDAT 2 24-FEB-09 1PQS 1 VERSN REVDAT 1 01-JUL-03 1PQS 0 JRNL AUTH D.LEITNER,M.WAHL,D.LABUDDE,G.KRAUSE,A.DIEHL,P.SCHMIEDER, JRNL AUTH 2 J.R.PIRES,M.FOSSI,U.WIEDEMANN,M.LEIDERT,H.OSCHKINAT JRNL TITL THE SOLUTION STRUCTURE OF AN N-TERMINALLY TRUNCATED VERSION JRNL TITL 2 OF THE YEAST CDC24P PB1 DOMAIN SHOWS A DIFFERENT BETA-SHEET JRNL TITL 3 TOPOLOGY. JRNL REF FEBS LETT. V. 579 3534 2005 JRNL REFN ISSN 0014-5793 JRNL PMID 15961083 JRNL DOI 10.1016/J.FEBSLET.2005.05.025 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PASTE/PAPST 1.0, ARIA/CNS 1.2 REMARK 3 AUTHORS : LABUDDE ET AL. (PASTE/PAPST), LINGE ET AL. REMARK 3 (ARIA/CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PQS COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 23-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019513. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 299.6; 299.6 REMARK 210 PH : 6.0; 6.0 REMARK 210 IONIC STRENGTH : 20MM POTASSIUM PHOSPHATE BUFFER, REMARK 210 50MM SODIUM CHLORIDE; 20MM REMARK 210 POTASSIUM PHOSPHATE, 50MM SODIUM REMARK 210 CHLORIDE REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.4MM OPCA U-15N, 13C; 20MM REMARK 210 POTASSIUM PHOSPHATE BUFFER, 50MM REMARK 210 NACL, 0.02% SODIUM AZID; PH 6.0; REMARK 210 1.4MM OPCA U-15N; 20MM POTASSIUM REMARK 210 PHOSPHATE BUFFER, 50MM NACL, REMARK 210 0.02% SODIUM AZID; PH 6.0 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 4D_15N-SEPARATED_NOESY; REMARK 210 4D_13C/15N-SEPARATED_NOESY; 3D_ REMARK 210 13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 2.6, NMRPIPE, SPARKY REMARK 210 3.100, CATCH23 1.5, PLATON 1.0, REMARK 210 ARIA/CNS 1.2 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURES ARE BASED ON A TOTAL OF 1754 RESTRAINTS, REMARK 210 1615 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 75 DIHEDRAL ANGLE REMARK 210 RESTRAINTS, 64 DISTANCE RESTRAINTS FROM HYDROGEN BONDS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG2 GLN A 819 HD21 ASN A 850 1.25 REMARK 500 O ILE A 813 HG1 THR A 814 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 4 TYR A 854 CE1 TYR A 854 CZ 0.088 REMARK 500 4 TYR A 854 CZ TYR A 854 CE2 -0.093 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 788 90.54 49.62 REMARK 500 1 ASN A 790 42.32 -86.71 REMARK 500 1 PHE A 791 -54.78 69.69 REMARK 500 1 THR A 805 -91.69 -56.41 REMARK 500 1 HIS A 806 37.52 -165.15 REMARK 500 1 ASN A 807 -131.11 -86.21 REMARK 500 1 ASN A 808 49.95 -76.41 REMARK 500 1 ASN A 809 43.35 -91.68 REMARK 500 1 ILE A 813 -3.06 68.10 REMARK 500 1 THR A 814 9.20 59.13 REMARK 500 1 LYS A 815 43.32 -103.79 REMARK 500 1 GLU A 821 18.43 59.40 REMARK 500 1 ASP A 831 65.94 -67.62 REMARK 500 1 GLU A 832 -47.35 -149.09 REMARK 500 1 ASN A 845 -12.53 96.20 REMARK 500 1 LYS A 847 -17.02 -142.47 REMARK 500 2 GLU A 786 -115.61 -80.20 REMARK 500 2 VAL A 788 -50.61 71.38 REMARK 500 2 TRP A 789 124.26 71.08 REMARK 500 2 ASN A 790 47.13 -83.92 REMARK 500 2 PHE A 791 -47.48 69.65 REMARK 500 2 ASN A 804 64.24 63.58 REMARK 500 2 THR A 805 -36.94 -172.67 REMARK 500 2 ILE A 813 -16.05 70.83 REMARK 500 2 THR A 814 11.52 58.29 REMARK 500 2 GLU A 821 19.92 56.21 REMARK 500 2 SER A 830 -74.57 -79.04 REMARK 500 2 ASP A 831 -45.58 179.64 REMARK 500 2 ASN A 845 -30.59 158.42 REMARK 500 2 GLU A 846 -178.82 -66.13 REMARK 500 2 LYS A 847 -23.95 -164.43 REMARK 500 2 LEU A 853 63.58 -114.38 REMARK 500 3 ILE A 780 128.84 170.04 REMARK 500 3 GLU A 786 -116.64 -94.54 REMARK 500 3 LYS A 787 42.77 -73.60 REMARK 500 3 VAL A 788 81.56 61.25 REMARK 500 3 ASN A 790 41.37 -84.95 REMARK 500 3 PHE A 791 -51.87 68.96 REMARK 500 3 ASN A 809 135.32 71.01 REMARK 500 3 ILE A 813 -14.72 73.21 REMARK 500 3 THR A 814 -29.63 70.46 REMARK 500 3 ASP A 831 -45.76 69.01 REMARK 500 3 ASN A 845 -26.50 152.34 REMARK 500 3 LYS A 847 -22.74 -154.65 REMARK 500 4 GLU A 786 -108.02 -95.45 REMARK 500 4 LYS A 787 47.43 -76.12 REMARK 500 4 VAL A 788 70.27 57.56 REMARK 500 4 ASN A 790 48.47 -94.82 REMARK 500 4 PHE A 791 -53.27 71.18 REMARK 500 4 SER A 803 -158.79 -94.46 REMARK 500 REMARK 500 THIS ENTRY HAS 286 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 10 TYR A 818 0.06 SIDE CHAIN REMARK 500 10 PHE A 825 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1PQS A 778 854 UNP P11433 CDC24_YEAST 778 854 SEQRES 1 A 77 SER GLU ILE PHE THR LEU LEU VAL GLU LYS VAL TRP ASN SEQRES 2 A 77 PHE ASP ASP LEU ILE MET ALA ILE ASN SER LYS ILE SER SEQRES 3 A 77 ASN THR HIS ASN ASN ASN ILE SER PRO ILE THR LYS ILE SEQRES 4 A 77 LYS TYR GLN ASP GLU ASP GLY ASP PHE VAL VAL LEU GLY SEQRES 5 A 77 SER ASP GLU ASP TRP ASN VAL ALA LYS GLU MET LEU ALA SEQRES 6 A 77 GLU ASN ASN GLU LYS PHE LEU ASN ILE ARG LEU TYR HELIX 1 1 PHE A 791 ILE A 802 1 12 HELIX 2 2 GLU A 832 ASN A 845 1 14 SHEET 1 A 4 ILE A 780 LEU A 784 0 SHEET 2 A 4 PHE A 848 ARG A 852 -1 O LEU A 849 N LEU A 783 SHEET 3 A 4 LYS A 817 ASP A 820 -1 N GLN A 819 O ASN A 850 SHEET 4 A 4 ASP A 824 VAL A 827 -1 O VAL A 826 N TYR A 818 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1