HEADER PLANT PROTEIN 22-JUN-03 1PSY TITLE STRUCTURE OF RICC3, NMR, 20 STRUCTURES COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2S ALBUMIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RICC3 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RICINUS COMMUNIS; SOURCE 3 ORGANISM_COMMON: CASTOR BEAN; SOURCE 4 ORGANISM_TAXID: 3988 KEYWDS RICC3, ALBUMIN SEED PROTEIN, SEED STORAGE PROTEIN, PLANT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR D.PANTOJA-UCEDA,M.BRUIX,G.GIMENEZ-GALLEGO,M.RICO,J.SANTORO REVDAT 3 02-MAR-22 1PSY 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PSY 1 VERSN REVDAT 1 13-JAN-04 1PSY 0 JRNL AUTH D.PANTOJA-UCEDA,M.BRUIX,G.GIMENEZ-GALLEGO,M.RICO,J.SANTORO JRNL TITL SOLUTION STRUCTURE OF RICC3, A 2S ALBUMIN STORAGE PROTEIN JRNL TITL 2 FROM RICINUS COMMUNIS. JRNL REF BIOCHEMISTRY V. 42 13839 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14636051 JRNL DOI 10.1021/BI0352217 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, AMBER 7 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), CASE (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PSY COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019547. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 3.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 2MM RICC3 15N; 10MM SODIUM REMARK 210 PHOSPHATE BUFFER ;95% H2O, 5% REMARK 210 D2O; 2MM RICC3 10MM SODIUM REMARK 210 PHOSPHATE BUFFER ;95% H2O, 5% REMARK 210 D2O; 2MM RICC3 10MM SODIUM REMARK 210 PHOSPHATE BUFFER ;100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4, DYANA 1.5 REMARK 210 METHOD USED : SIMULATED ANNEALING, TORSION REMARK 210 ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 14 H ARG A 19 0.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 CYS A 77 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 2 GLU A 11 OE1 - CD - OE2 ANGL. DEV. = -11.3 DEGREES REMARK 500 11 ASP A 75 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PHE A 3 101.15 -172.76 REMARK 500 1 SER A 6 136.81 173.88 REMARK 500 1 SER A 13 -83.55 -116.71 REMARK 500 1 SER A 14 -157.56 -63.73 REMARK 500 1 SER A 15 -153.59 -59.78 REMARK 500 1 GLN A 17 48.93 -161.65 REMARK 500 1 ARG A 19 -36.73 -37.22 REMARK 500 1 GLN A 20 -78.69 -56.02 REMARK 500 1 GLN A 23 32.43 -76.49 REMARK 500 1 ARG A 24 -46.92 -148.03 REMARK 500 1 LYS A 25 -73.78 -115.61 REMARK 500 1 ASP A 26 150.23 -46.13 REMARK 500 1 LEU A 27 84.50 -5.16 REMARK 500 1 SER A 28 25.77 -140.36 REMARK 500 1 SER A 29 -31.91 -174.67 REMARK 500 1 SER A 38 143.40 -171.25 REMARK 500 1 SER A 39 150.93 -45.24 REMARK 500 1 SER A 42 -156.21 -164.27 REMARK 500 1 VAL A 47 59.31 -150.89 REMARK 500 1 GLN A 57 92.28 -64.24 REMARK 500 1 GLN A 58 138.88 177.11 REMARK 500 1 GLU A 59 96.58 -48.59 REMARK 500 1 SER A 60 56.92 -168.48 REMARK 500 1 ASP A 75 -44.80 156.10 REMARK 500 1 TYR A 84 -64.79 -102.19 REMARK 500 1 ALA A 86 48.12 -76.21 REMARK 500 1 GLU A 87 -51.13 -172.93 REMARK 500 1 GLN A 94 47.51 -82.25 REMARK 500 1 GLU A 98 33.13 -165.74 REMARK 500 1 SER A 113 -77.76 -72.29 REMARK 500 1 CYS A 114 34.12 -153.23 REMARK 500 1 VAL A 116 98.22 -69.10 REMARK 500 1 ARG A 117 -93.33 -141.54 REMARK 500 1 ARG A 120 -48.69 -157.11 REMARK 500 1 THR A 124 -47.14 -136.18 REMARK 500 2 MET A 4 131.26 171.51 REMARK 500 2 SER A 6 160.02 167.60 REMARK 500 2 LYS A 7 158.35 173.65 REMARK 500 2 SER A 13 37.29 179.44 REMARK 500 2 SER A 15 -174.85 -61.98 REMARK 500 2 GLN A 17 40.37 -175.86 REMARK 500 2 GLN A 23 37.85 -80.94 REMARK 500 2 ARG A 24 -44.85 -150.28 REMARK 500 2 LYS A 25 -72.69 -126.57 REMARK 500 2 LEU A 27 82.79 -4.17 REMARK 500 2 SER A 28 33.26 -142.87 REMARK 500 2 SER A 29 -32.17 -177.08 REMARK 500 2 GLN A 36 -166.14 -77.88 REMARK 500 2 SER A 37 -150.05 -82.75 REMARK 500 2 SER A 38 51.51 -113.76 REMARK 500 REMARK 500 THIS ENTRY HAS 725 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 GLU A 11 0.10 SIDE CHAIN REMARK 500 8 TYR A 84 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1PSY A 1 125 UNP P01089 2SS_RICCO 32 156 SEQADV 1PSY ALA A 1 UNP P01089 ILE 32 CONFLICT SEQADV 1PSY PHE A 3 UNP P01089 ILE 34 CONFLICT SEQADV 1PSY MET A 4 UNP P01089 ASP 35 CONFLICT SEQRES 1 A 125 ALA GLU PHE MET GLU SER LYS GLY GLU ARG GLU GLY SER SEQRES 2 A 125 SER SER GLN GLN CYS ARG GLN GLU VAL GLN ARG LYS ASP SEQRES 3 A 125 LEU SER SER CYS GLU ARG TYR LEU ARG GLN SER SER SER SEQRES 4 A 125 ARG ARG SER THR GLY GLU GLU VAL LEU ARG MET PRO GLY SEQRES 5 A 125 ASP GLU ASN GLN GLN GLN GLU SER GLN GLN LEU GLN GLN SEQRES 6 A 125 CYS CYS ASN GLN VAL LYS GLN VAL ARG ASP GLU CYS GLN SEQRES 7 A 125 CYS GLU ALA ILE LYS TYR ILE ALA GLU ASP GLN ILE GLN SEQRES 8 A 125 GLN GLY GLN LEU HIS GLY GLU GLU SER GLU ARG VAL ALA SEQRES 9 A 125 GLN ARG ALA GLY GLU ILE VAL SER SER CYS GLY VAL ARG SEQRES 10 A 125 CYS MET ARG GLN THR ARG THR ASN HELIX 1 1 GLN A 17 GLN A 23 1 7 HELIX 2 2 SER A 29 GLN A 36 1 8 HELIX 3 3 SER A 60 LYS A 71 1 12 HELIX 4 4 GLU A 76 GLY A 93 1 18 HELIX 5 5 SER A 100 GLY A 115 1 16 SSBOND 1 CYS A 18 CYS A 77 1555 1555 2.01 SSBOND 2 CYS A 30 CYS A 66 1555 1555 2.01 SSBOND 3 CYS A 67 CYS A 114 1555 1555 2.04 SSBOND 4 CYS A 79 CYS A 118 1555 1555 2.09 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1