HEADER STRUCTURAL GENOMICS,UNKNOWN FUNCTION 23-JUN-03 1PT5 TITLE CRYSTAL STRUCTURE OF GENE YFDW OF E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN YFDW; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI, SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_COMMON: ,; SOURCE 4 ORGANISM_TAXID: 562,623; SOURCE 5 STRAIN: K12, K12; SOURCE 6 GENE: YFDW OR B2374 OR SF2441; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: TUNER(DE3)PLYSS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS TRANSFERASE, COENZYME BINDING, ACETYLCOA, STRUCTURAL GENOMICS, KEYWDS 2 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.GRUEZ,V.ROIG-ZAMBONI,C.VALENCIA,V.CAMPANACCI,C.CAMBILLAU REVDAT 4 03-APR-24 1PT5 1 REMARK REVDAT 3 14-FEB-24 1PT5 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PT5 1 VERSN REVDAT 1 09-SEP-03 1PT5 0 JRNL AUTH A.GRUEZ,V.ROIG-ZAMBONI,C.VALENCIA,V.CAMPANACCI,C.CAMBILLAU JRNL TITL THE CRYSTAL STRUCTURE OF THE ESCHERICHIA COLI YFDW GENE JRNL TITL 2 PRODUCT REVEALS A NEW FOLD OF TWO INTERLACED RINGS JRNL TITL 3 IDENTIFYING A WIDE FAMILY OF COA TRANSFERASES JRNL REF J.BIOL.CHEM. V. 278 34582 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12844490 JRNL DOI 10.1074/JBC.C300282200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 96936 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.159 REMARK 3 R VALUE (WORKING SET) : 0.158 REMARK 3 FREE R VALUE : 0.176 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 8795 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6865 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1900 REMARK 3 BIN FREE R VALUE SET COUNT : 631 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6432 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 102 REMARK 3 SOLVENT ATOMS : 617 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.86 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.38000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 2.07000 REMARK 3 B12 (A**2) : -0.69000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.105 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.088 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.962 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6680 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9082 ; 1.498 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 828 ; 5.367 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 988 ; 0.106 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5087 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3293 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 526 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 40 ; 0.197 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.193 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4132 ; 0.785 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6640 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2548 ; 2.644 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2442 ; 4.373 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PT5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019553. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : SI111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 105732 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.26500 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: APO-ENZYME REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG600, CACODYLATE, ACETYLCOA, PH 6.5, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 86.34333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 43.17167 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 86.34333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.17167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 15400 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -20 REMARK 465 TYR A -19 REMARK 465 TYR A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 LEU A -11 REMARK 465 GLU A -10 REMARK 465 SER A -9 REMARK 465 THR A -8 REMARK 465 SER A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 LYS A -4 REMARK 465 LYS A -3 REMARK 465 ALA A -2 REMARK 465 GLY A -1 REMARK 465 LEU A 0 REMARK 465 MET A 1 REMARK 465 SER B -20 REMARK 465 TYR B -19 REMARK 465 TYR B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 LEU B -11 REMARK 465 GLU B -10 REMARK 465 SER B -9 REMARK 465 THR B -8 REMARK 465 SER B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 LYS B -4 REMARK 465 LYS B -3 REMARK 465 ALA B -2 REMARK 465 GLY B -1 REMARK 465 LEU B 0 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 81 CG CD OE1 OE2 REMARK 480 ARG A 192 NE CZ NH1 NH2 REMARK 480 ASP A 307 CG OD1 OD2 REMARK 480 GLU A 323 CD OE1 OE2 REMARK 480 ASP A 332 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 12 O HOH A 1206 1.95 REMARK 500 N GLN B 17 CH3 ACO B 801 2.17 REMARK 500 OG SER A 355 O HOH A 1210 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 83 CG - SD - CE ANGL. DEV. = 16.5 DEGREES REMARK 500 LEU A 212 CB - CG - CD2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 301 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 404 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 ASP B 219 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP B 347 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 13 60.09 -105.58 REMARK 500 VAL A 16 -124.00 66.74 REMARK 500 VAL A 41 -64.08 -127.91 REMARK 500 ASN A 96 38.12 -140.78 REMARK 500 PHE A 107 62.40 -105.05 REMARK 500 GLU A 140 -64.51 -24.46 REMARK 500 ASP A 169 -84.42 -102.41 REMARK 500 LEU A 363 -54.19 76.46 REMARK 500 PHE B 13 60.90 -103.72 REMARK 500 VAL B 16 -124.02 64.44 REMARK 500 VAL B 41 -63.84 -127.38 REMARK 500 ASP B 54 -0.65 71.93 REMARK 500 ASN B 96 38.21 -140.38 REMARK 500 PHE B 107 64.58 -105.49 REMARK 500 GLU B 140 -67.40 -23.15 REMARK 500 ASP B 169 -83.19 -102.31 REMARK 500 LEU B 363 -52.88 73.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 ACO A 901 REMARK 615 ACO B 801 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACO B 801 DBREF 1PT5 A 1 416 UNP P69902 FCTA_ECOLI 1 416 DBREF 1PT5 B 1 416 UNP P69902 FCTA_ECOLI 1 416 SEQADV 1PT5 SER A -20 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR A -19 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR A -18 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 HIS A -17 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS A -16 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS A -15 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS A -14 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS A -13 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS A -12 UNP P69902 EXPRESSION TAG SEQADV 1PT5 LEU A -11 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 GLU A -10 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 SER A -9 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 THR A -8 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 SER A -7 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LEU A -6 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR A -5 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LYS A -4 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LYS A -3 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 ALA A -2 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 GLY A -1 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LEU A 0 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 SER B -20 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR B -19 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR B -18 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 HIS B -17 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS B -16 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS B -15 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS B -14 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS B -13 UNP P69902 EXPRESSION TAG SEQADV 1PT5 HIS B -12 UNP P69902 EXPRESSION TAG SEQADV 1PT5 LEU B -11 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 GLU B -10 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 SER B -9 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 THR B -8 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 SER B -7 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LEU B -6 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 TYR B -5 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LYS B -4 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LYS B -3 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 ALA B -2 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 GLY B -1 UNP P69902 CLONING ARTIFACT SEQADV 1PT5 LEU B 0 UNP P69902 CLONING ARTIFACT SEQRES 1 A 437 SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER THR SEQRES 2 A 437 SER LEU TYR LYS LYS ALA GLY LEU MET SER THR PRO LEU SEQRES 3 A 437 GLN GLY ILE LYS VAL LEU ASP PHE THR GLY VAL GLN SER SEQRES 4 A 437 GLY PRO SER CYS THR GLN MET LEU ALA TRP PHE GLY ALA SEQRES 5 A 437 ASP VAL ILE LYS ILE GLU ARG PRO GLY VAL GLY ASP VAL SEQRES 6 A 437 THR ARG HIS GLN LEU ARG ASP ILE PRO ASP ILE ASP ALA SEQRES 7 A 437 LEU TYR PHE THR MET LEU ASN SER ASN LYS ARG SER ILE SEQRES 8 A 437 GLU LEU ASN THR LYS THR ALA GLU GLY LYS GLU VAL MET SEQRES 9 A 437 GLU LYS LEU ILE ARG GLU ALA ASP ILE LEU VAL GLU ASN SEQRES 10 A 437 PHE HIS PRO GLY ALA ILE ASP HIS MET GLY PHE THR TRP SEQRES 11 A 437 GLU HIS ILE GLN GLU ILE ASN PRO ARG LEU ILE PHE GLY SEQRES 12 A 437 SER ILE LYS GLY PHE ASP GLU CYS SER PRO TYR VAL ASN SEQRES 13 A 437 VAL LYS ALA TYR GLU ASN VAL ALA GLN ALA ALA GLY GLY SEQRES 14 A 437 ALA ALA SER THR THR GLY PHE TRP ASP GLY PRO PRO LEU SEQRES 15 A 437 VAL SER ALA ALA ALA LEU GLY ASP SER ASN THR GLY MET SEQRES 16 A 437 HIS LEU LEU ILE GLY LEU LEU ALA ALA LEU LEU HIS ARG SEQRES 17 A 437 GLU LYS THR GLY ARG GLY GLN ARG VAL THR MET SER MET SEQRES 18 A 437 GLN ASP ALA VAL LEU ASN LEU CYS ARG VAL LYS LEU ARG SEQRES 19 A 437 ASP GLN GLN ARG LEU ASP LYS LEU GLY TYR LEU GLU GLU SEQRES 20 A 437 TYR PRO GLN TYR PRO ASN GLY THR PHE GLY ASP ALA VAL SEQRES 21 A 437 PRO ARG GLY GLY ASN ALA GLY GLY GLY GLY GLN PRO GLY SEQRES 22 A 437 TRP ILE LEU LYS CYS LYS GLY TRP GLU THR ASP PRO ASN SEQRES 23 A 437 ALA TYR ILE TYR PHE THR ILE GLN GLU GLN ASN TRP GLU SEQRES 24 A 437 ASN THR CYS LYS ALA ILE GLY LYS PRO GLU TRP ILE THR SEQRES 25 A 437 ASP PRO ALA TYR SER THR ALA HIS ALA ARG GLN PRO HIS SEQRES 26 A 437 ILE PHE ASP ILE PHE ALA GLU ILE GLU LYS TYR THR VAL SEQRES 27 A 437 THR ILE ASP LYS HIS GLU ALA VAL ALA TYR LEU THR GLN SEQRES 28 A 437 PHE ASP ILE PRO CYS ALA PRO VAL LEU SER MET LYS GLU SEQRES 29 A 437 ILE SER LEU ASP PRO SER LEU ARG GLN SER GLY SER VAL SEQRES 30 A 437 VAL GLU VAL GLU GLN PRO LEU ARG GLY LYS TYR LEU THR SEQRES 31 A 437 VAL GLY CYS PRO MET LYS PHE SER ALA PHE THR PRO ASP SEQRES 32 A 437 ILE LYS ALA ALA PRO LEU LEU GLY GLU HIS THR ALA ALA SEQRES 33 A 437 VAL LEU GLN GLU LEU GLY TYR SER ASP ASP GLU ILE ALA SEQRES 34 A 437 ALA MET LYS GLN ASN HIS ALA ILE SEQRES 1 B 437 SER TYR TYR HIS HIS HIS HIS HIS HIS LEU GLU SER THR SEQRES 2 B 437 SER LEU TYR LYS LYS ALA GLY LEU MET SER THR PRO LEU SEQRES 3 B 437 GLN GLY ILE LYS VAL LEU ASP PHE THR GLY VAL GLN SER SEQRES 4 B 437 GLY PRO SER CYS THR GLN MET LEU ALA TRP PHE GLY ALA SEQRES 5 B 437 ASP VAL ILE LYS ILE GLU ARG PRO GLY VAL GLY ASP VAL SEQRES 6 B 437 THR ARG HIS GLN LEU ARG ASP ILE PRO ASP ILE ASP ALA SEQRES 7 B 437 LEU TYR PHE THR MET LEU ASN SER ASN LYS ARG SER ILE SEQRES 8 B 437 GLU LEU ASN THR LYS THR ALA GLU GLY LYS GLU VAL MET SEQRES 9 B 437 GLU LYS LEU ILE ARG GLU ALA ASP ILE LEU VAL GLU ASN SEQRES 10 B 437 PHE HIS PRO GLY ALA ILE ASP HIS MET GLY PHE THR TRP SEQRES 11 B 437 GLU HIS ILE GLN GLU ILE ASN PRO ARG LEU ILE PHE GLY SEQRES 12 B 437 SER ILE LYS GLY PHE ASP GLU CYS SER PRO TYR VAL ASN SEQRES 13 B 437 VAL LYS ALA TYR GLU ASN VAL ALA GLN ALA ALA GLY GLY SEQRES 14 B 437 ALA ALA SER THR THR GLY PHE TRP ASP GLY PRO PRO LEU SEQRES 15 B 437 VAL SER ALA ALA ALA LEU GLY ASP SER ASN THR GLY MET SEQRES 16 B 437 HIS LEU LEU ILE GLY LEU LEU ALA ALA LEU LEU HIS ARG SEQRES 17 B 437 GLU LYS THR GLY ARG GLY GLN ARG VAL THR MET SER MET SEQRES 18 B 437 GLN ASP ALA VAL LEU ASN LEU CYS ARG VAL LYS LEU ARG SEQRES 19 B 437 ASP GLN GLN ARG LEU ASP LYS LEU GLY TYR LEU GLU GLU SEQRES 20 B 437 TYR PRO GLN TYR PRO ASN GLY THR PHE GLY ASP ALA VAL SEQRES 21 B 437 PRO ARG GLY GLY ASN ALA GLY GLY GLY GLY GLN PRO GLY SEQRES 22 B 437 TRP ILE LEU LYS CYS LYS GLY TRP GLU THR ASP PRO ASN SEQRES 23 B 437 ALA TYR ILE TYR PHE THR ILE GLN GLU GLN ASN TRP GLU SEQRES 24 B 437 ASN THR CYS LYS ALA ILE GLY LYS PRO GLU TRP ILE THR SEQRES 25 B 437 ASP PRO ALA TYR SER THR ALA HIS ALA ARG GLN PRO HIS SEQRES 26 B 437 ILE PHE ASP ILE PHE ALA GLU ILE GLU LYS TYR THR VAL SEQRES 27 B 437 THR ILE ASP LYS HIS GLU ALA VAL ALA TYR LEU THR GLN SEQRES 28 B 437 PHE ASP ILE PRO CYS ALA PRO VAL LEU SER MET LYS GLU SEQRES 29 B 437 ILE SER LEU ASP PRO SER LEU ARG GLN SER GLY SER VAL SEQRES 30 B 437 VAL GLU VAL GLU GLN PRO LEU ARG GLY LYS TYR LEU THR SEQRES 31 B 437 VAL GLY CYS PRO MET LYS PHE SER ALA PHE THR PRO ASP SEQRES 32 B 437 ILE LYS ALA ALA PRO LEU LEU GLY GLU HIS THR ALA ALA SEQRES 33 B 437 VAL LEU GLN GLU LEU GLY TYR SER ASP ASP GLU ILE ALA SEQRES 34 B 437 ALA MET LYS GLN ASN HIS ALA ILE HET ACO A 901 58 HET ACO B 801 58 HETNAM ACO ACETYL COENZYME *A FORMUL 3 ACO 2(C23 H38 N7 O17 P3 S) FORMUL 5 HOH *617(H2 O) HELIX 1 1 GLN A 17 PHE A 29 1 13 HELIX 2 2 ASP A 43 GLN A 48 5 6 HELIX 3 3 ALA A 57 MET A 62 1 6 HELIX 4 4 THR A 76 ALA A 90 1 15 HELIX 5 5 GLY A 100 MET A 105 1 6 HELIX 6 6 THR A 108 ASN A 116 1 9 HELIX 7 7 TYR A 139 GLY A 147 1 9 HELIX 8 8 GLY A 148 THR A 153 1 6 HELIX 9 9 ASP A 169 GLY A 191 1 23 HELIX 10 10 MET A 200 CYS A 208 1 9 HELIX 11 11 CYS A 208 GLY A 222 1 15 HELIX 12 12 GLN A 273 GLN A 275 5 3 HELIX 13 13 ASN A 276 ILE A 284 1 9 HELIX 14 14 LYS A 286 ILE A 290 5 5 HELIX 15 15 THR A 297 GLN A 302 1 6 HELIX 16 16 HIS A 304 VAL A 317 1 14 HELIX 17 17 ASP A 320 THR A 329 1 10 HELIX 18 18 GLN A 330 ASP A 332 5 3 HELIX 19 19 SER A 340 ASP A 347 1 8 HELIX 20 20 ASP A 347 SER A 353 1 7 HELIX 21 21 HIS A 392 LEU A 400 1 9 HELIX 22 22 SER A 403 ASN A 413 1 11 HELIX 23 23 GLN B 17 PHE B 29 1 13 HELIX 24 24 ASP B 43 GLN B 48 5 6 HELIX 25 25 ALA B 57 MET B 62 1 6 HELIX 26 26 THR B 76 ALA B 90 1 15 HELIX 27 27 GLY B 100 MET B 105 1 6 HELIX 28 28 THR B 108 ASN B 116 1 9 HELIX 29 29 TYR B 139 GLY B 148 1 10 HELIX 30 30 GLY B 148 THR B 153 1 6 HELIX 31 31 ASP B 169 GLY B 191 1 23 HELIX 32 32 MET B 200 CYS B 208 1 9 HELIX 33 33 CYS B 208 GLY B 222 1 15 HELIX 34 34 GLN B 273 GLN B 275 5 3 HELIX 35 35 ASN B 276 ILE B 284 1 9 HELIX 36 36 LYS B 286 ILE B 290 5 5 HELIX 37 37 THR B 297 GLN B 302 1 6 HELIX 38 38 HIS B 304 VAL B 317 1 14 HELIX 39 39 ASP B 320 THR B 329 1 10 HELIX 40 40 GLN B 330 ASP B 332 5 3 HELIX 41 41 SER B 340 ASP B 347 1 8 HELIX 42 42 ASP B 347 SER B 353 1 7 HELIX 43 43 HIS B 392 LEU B 400 1 9 HELIX 44 44 SER B 403 ASN B 413 1 11 SHEET 1 A 7 ARG A 68 GLU A 71 0 SHEET 2 A 7 ASP A 32 GLU A 37 1 N LYS A 35 O ARG A 68 SHEET 3 A 7 LYS A 9 PHE A 13 1 N ASP A 12 O ILE A 34 SHEET 4 A 7 ILE A 92 GLU A 95 1 O VAL A 94 N LEU A 11 SHEET 5 A 7 ILE A 120 LYS A 125 1 O GLY A 122 N LEU A 93 SHEET 6 A 7 ARG A 195 SER A 199 1 O VAL A 196 N PHE A 121 SHEET 7 A 7 LYS B 375 PHE B 376 -1 O LYS B 375 N THR A 197 SHEET 1 B 3 GLY A 252 LYS A 256 0 SHEET 2 B 3 TYR A 267 THR A 271 -1 O PHE A 270 N TRP A 253 SHEET 3 B 3 CYS A 335 PRO A 337 -1 O ALA A 336 N TYR A 269 SHEET 1 C 2 VAL A 356 GLN A 361 0 SHEET 2 C 2 GLY A 365 VAL A 370 -1 O TYR A 367 N VAL A 359 SHEET 1 D 7 LYS A 375 PHE A 376 0 SHEET 2 D 7 ARG B 195 SER B 199 -1 O THR B 197 N LYS A 375 SHEET 3 D 7 ILE B 120 LYS B 125 1 N PHE B 121 O VAL B 196 SHEET 4 D 7 ILE B 92 GLU B 95 1 N LEU B 93 O GLY B 122 SHEET 5 D 7 LYS B 9 PHE B 13 1 N LEU B 11 O ILE B 92 SHEET 6 D 7 ASP B 32 GLU B 37 1 O ILE B 34 N VAL B 10 SHEET 7 D 7 ARG B 68 GLU B 71 1 O ARG B 68 N LYS B 35 SHEET 1 E 3 GLY B 252 LYS B 256 0 SHEET 2 E 3 TYR B 267 THR B 271 -1 O PHE B 270 N TRP B 253 SHEET 3 E 3 CYS B 335 PRO B 337 -1 O ALA B 336 N TYR B 269 SHEET 1 F 2 VAL B 356 GLN B 361 0 SHEET 2 F 2 GLY B 365 VAL B 370 -1 O TYR B 367 N VAL B 359 CISPEP 1 TYR A 230 PRO A 231 0 -3.45 CISPEP 2 TYR B 230 PRO B 231 0 -4.04 SITE 1 AC1 29 VAL A 16 GLN A 17 SER A 18 ARG A 38 SITE 2 AC1 29 LEU A 72 ASN A 73 THR A 74 LYS A 75 SITE 3 AC1 29 ASN A 96 PHE A 97 HIS A 98 ALA A 101 SITE 4 AC1 29 ILE A 124 LYS A 137 ALA A 138 TYR A 139 SITE 5 AC1 29 GLU A 140 ASP A 169 MET A 200 HOH A 974 SITE 6 AC1 29 HOH A1039 HOH A1047 HOH A1179 HOH A1186 SITE 7 AC1 29 HOH A1196 GLY B 248 GLY B 249 GLN B 273 SITE 8 AC1 29 GLN B 275 SITE 1 AC2 29 GLY A 248 GLY A 249 GLN A 273 PHE B 13 SITE 2 AC2 29 VAL B 16 GLN B 17 SER B 18 ARG B 38 SITE 3 AC2 29 LEU B 72 ASN B 73 THR B 74 LYS B 75 SITE 4 AC2 29 ASN B 96 PHE B 97 HIS B 98 ALA B 101 SITE 5 AC2 29 ILE B 124 LYS B 137 ALA B 138 TYR B 139 SITE 6 AC2 29 GLU B 140 ASP B 169 MET B 200 HOH B 858 SITE 7 AC2 29 HOH B 931 HOH B 935 HOH B 954 HOH B 981 SITE 8 AC2 29 HOH B1055 CRYST1 146.882 146.882 129.515 90.00 90.00 120.00 P 62 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006808 0.003931 0.000000 0.00000 SCALE2 0.000000 0.007861 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007721 0.00000