HEADER OXIDOREDUCTASE 23-JUN-03 1PT9 TITLE CRYSTAL STRUCTURE ANALYSIS OF THE DIII COMPONENT OF TRANSHYDROGENASE TITLE 2 WITH A THIO-NICOTINAMIDE NUCLEOTIDE ANALOGUE COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE, MITOCHONDRIAL; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 880-1086; COMPND 5 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE, NICOTINAMIDE COMPND 6 NUCLEOTIDE TRANSHYDROGENASE; COMPND 7 EC: 1.6.1.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: HEART KEYWDS TRANSHYDROGENASE, THIO-NICOTINAMIDE, MITOCHONDRIA, PROTON KEYWDS 2 TRANSLOCATION, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.SINGH,J.D.VENNING,P.G.QUIRK,G.I.VAN BOXEL,D.J.RODRIGUES,S.A.WHITE, AUTHOR 2 J.B.JACKSON REVDAT 5 16-AUG-23 1PT9 1 REMARK REVDAT 4 31-JAN-18 1PT9 1 REMARK REVDAT 3 13-JUL-11 1PT9 1 VERSN REVDAT 2 24-FEB-09 1PT9 1 VERSN REVDAT 1 07-OCT-03 1PT9 0 JRNL AUTH A.SINGH,J.D.VENNING,P.G.QUIRK,G.I.VAN BOXEL,D.J.RODRIGUES, JRNL AUTH 2 S.A.WHITE,J.B.JACKSON JRNL TITL INTERACTIONS BETWEEN TRANSHYDROGENASE AND THIO-NICOTINAMIDE JRNL TITL 2 ANALOGUES OF NAD(H) AND NADP(H) UNDERLINE THE IMPORTANCE OF JRNL TITL 3 NUCLEOTIDE CONFORMATIONAL CHANGES IN COUPLING TO PROTON JRNL TITL 4 TRANSLOCATION JRNL REF J.BIOL.CHEM. V. 278 33208 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12791694 JRNL DOI 10.1074/JBC.M303061200 REMARK 2 REMARK 2 RESOLUTION. 2.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 100817 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2190 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 5040 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 38.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.400 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.341 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.982 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.960 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : THIO_HET.PAR REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PT9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019557. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 100817 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.420 REMARK 200 RESOLUTION RANGE LOW (A) : 36.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.31900 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1DJL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, PEG 400, GLYCEROL, REMARK 280 PH 7.00, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 100K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 125.56500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 62.78250 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 188.34750 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 125.56500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 188.34750 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 62.78250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -91.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 57.40000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 57.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.78250 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 1.000000 0.000000 0.000000 57.40000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 -1.000000 0.000000 57.40000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 62.78250 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15480 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 57.40000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -41.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 57.40000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 57.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 62.78250 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 322 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 368 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 377 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 ASN A 7 REMARK 465 VAL A 8 REMARK 465 ILE A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 GLY A 12 REMARK 465 TYR A 13 REMARK 465 GLY A 14 REMARK 465 THR A 15 REMARK 465 THR A 16 REMARK 465 SER A 17 REMARK 465 THR A 18 REMARK 465 ALA A 19 REMARK 465 GLY A 20 REMARK 465 GLY A 21 REMARK 465 LYS A 22 REMARK 465 TYR A 205 REMARK 465 GLN A 206 REMARK 465 LYS A 207 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 ASN B 7 REMARK 465 VAL B 8 REMARK 465 ILE B 9 REMARK 465 LEU B 10 REMARK 465 GLY B 11 REMARK 465 GLY B 12 REMARK 465 TYR B 13 REMARK 465 GLY B 14 REMARK 465 THR B 15 REMARK 465 THR B 16 REMARK 465 SER B 17 REMARK 465 THR B 18 REMARK 465 ALA B 19 REMARK 465 GLY B 20 REMARK 465 GLY B 21 REMARK 465 LYS B 22 REMARK 465 TYR B 205 REMARK 465 GLN B 206 REMARK 465 LYS B 207 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 130 -73.24 -154.99 REMARK 500 SER A 165 -161.00 -165.43 REMARK 500 GLU A 203 29.78 -77.19 REMARK 500 GLU B 25 95.15 -165.08 REMARK 500 GLN B 75 8.12 -64.44 REMARK 500 ASN B 130 -75.42 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAP A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 220 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 230 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PTJ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE ANALYSIS OF THE DI AND DIII COMPLEX OF REMARK 900 TRANSHYDROGENASE WITH A THIO-NICOTINAMIDE NUCLEOTIDE ANALOGUE DBREF 1PT9 A 1 207 UNP Q13423 NNTM_HUMAN 880 1086 DBREF 1PT9 B 1 207 UNP Q13423 NNTM_HUMAN 880 1086 SEQRES 1 A 207 MET ASN ARG SER LEU ALA ASN VAL ILE LEU GLY GLY TYR SEQRES 2 A 207 GLY THR THR SER THR ALA GLY GLY LYS PRO MET GLU ILE SEQRES 3 A 207 SER GLY THR HIS THR GLU ILE ASN LEU ASP ASN ALA ILE SEQRES 4 A 207 ASP MET ILE ARG GLU ALA ASN SER ILE ILE ILE THR PRO SEQRES 5 A 207 GLY TYR GLY LEU CYS ALA ALA LYS ALA GLN TYR PRO ILE SEQRES 6 A 207 ALA ASP LEU VAL LYS MET LEU THR GLU GLN GLY LYS LYS SEQRES 7 A 207 VAL ARG PHE GLY ILE HIS PRO VAL ALA GLY ARG MET PRO SEQRES 8 A 207 GLY GLN LEU ASN VAL LEU LEU ALA GLU ALA GLY VAL PRO SEQRES 9 A 207 TYR ASP ILE VAL LEU GLU MET ASP GLU ILE ASN HIS ASP SEQRES 10 A 207 PHE PRO ASP THR ASP LEU VAL LEU VAL ILE GLY ALA ASN SEQRES 11 A 207 ASP THR VAL ASN SER ALA ALA GLN GLU ASP PRO ASN SER SEQRES 12 A 207 ILE ILE ALA GLY MET PRO VAL LEU GLU VAL TRP LYS SER SEQRES 13 A 207 LYS GLN VAL ILE VAL MET LYS ARG SER LEU GLY VAL GLY SEQRES 14 A 207 TYR ALA ALA VAL ASP ASN PRO ILE PHE TYR LYS PRO ASN SEQRES 15 A 207 THR ALA MET LEU LEU GLY ASP ALA LYS LYS THR CYS ASP SEQRES 16 A 207 ALA LEU GLN ALA LYS VAL ARG GLU SER TYR GLN LYS SEQRES 1 B 207 MET ASN ARG SER LEU ALA ASN VAL ILE LEU GLY GLY TYR SEQRES 2 B 207 GLY THR THR SER THR ALA GLY GLY LYS PRO MET GLU ILE SEQRES 3 B 207 SER GLY THR HIS THR GLU ILE ASN LEU ASP ASN ALA ILE SEQRES 4 B 207 ASP MET ILE ARG GLU ALA ASN SER ILE ILE ILE THR PRO SEQRES 5 B 207 GLY TYR GLY LEU CYS ALA ALA LYS ALA GLN TYR PRO ILE SEQRES 6 B 207 ALA ASP LEU VAL LYS MET LEU THR GLU GLN GLY LYS LYS SEQRES 7 B 207 VAL ARG PHE GLY ILE HIS PRO VAL ALA GLY ARG MET PRO SEQRES 8 B 207 GLY GLN LEU ASN VAL LEU LEU ALA GLU ALA GLY VAL PRO SEQRES 9 B 207 TYR ASP ILE VAL LEU GLU MET ASP GLU ILE ASN HIS ASP SEQRES 10 B 207 PHE PRO ASP THR ASP LEU VAL LEU VAL ILE GLY ALA ASN SEQRES 11 B 207 ASP THR VAL ASN SER ALA ALA GLN GLU ASP PRO ASN SER SEQRES 12 B 207 ILE ILE ALA GLY MET PRO VAL LEU GLU VAL TRP LYS SER SEQRES 13 B 207 LYS GLN VAL ILE VAL MET LYS ARG SER LEU GLY VAL GLY SEQRES 14 B 207 TYR ALA ALA VAL ASP ASN PRO ILE PHE TYR LYS PRO ASN SEQRES 15 B 207 THR ALA MET LEU LEU GLY ASP ALA LYS LYS THR CYS ASP SEQRES 16 B 207 ALA LEU GLN ALA LYS VAL ARG GLU SER TYR GLN LYS HET SO4 A 208 5 HET TAP A 300 48 HET GOL A 220 6 HET SO4 B 210 5 HET TAP B 301 48 HET GOL B 230 6 HETNAM SO4 SULFATE ION HETNAM TAP 7-THIONICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN TAP TATP HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 TAP 2(C21 H28 N7 O16 P3 S) FORMUL 5 GOL 2(C3 H8 O3) FORMUL 9 HOH *171(H2 O) HELIX 1 1 ASN A 34 ALA A 45 1 12 HELIX 2 2 GLY A 53 LYS A 60 1 8 HELIX 3 3 ALA A 61 GLU A 74 1 14 HELIX 4 4 GLY A 92 GLY A 102 1 11 HELIX 5 5 PRO A 104 ASP A 106 5 3 HELIX 6 6 MET A 111 ASN A 115 1 5 HELIX 7 7 HIS A 116 PHE A 118 5 3 HELIX 8 8 ASN A 130 ASN A 134 5 5 HELIX 9 9 SER A 135 ASP A 140 1 6 HELIX 10 10 GLU A 152 SER A 156 5 5 HELIX 11 11 ASN A 175 LYS A 180 5 6 HELIX 12 12 ASP A 189 GLU A 203 1 15 HELIX 13 13 ASN B 34 ALA B 45 1 12 HELIX 14 14 GLY B 53 ALA B 59 1 7 HELIX 15 15 ALA B 61 GLN B 75 1 15 HELIX 16 16 GLY B 92 ALA B 101 1 10 HELIX 17 17 PRO B 104 ASP B 106 5 3 HELIX 18 18 MET B 111 ASN B 115 1 5 HELIX 19 19 HIS B 116 THR B 121 5 6 HELIX 20 20 ASN B 130 ASN B 134 5 5 HELIX 21 21 SER B 135 ASP B 140 1 6 HELIX 22 22 GLU B 152 SER B 156 5 5 HELIX 23 23 ASN B 175 LYS B 180 5 6 HELIX 24 24 ASP B 189 GLU B 203 1 15 SHEET 1 A 6 VAL A 108 GLU A 110 0 SHEET 2 A 6 LYS A 78 ILE A 83 1 N ILE A 83 O LEU A 109 SHEET 3 A 6 SER A 47 PRO A 52 1 N ILE A 48 O LYS A 78 SHEET 4 A 6 LEU A 123 ILE A 127 1 O LEU A 123 N ILE A 49 SHEET 5 A 6 GLN A 158 MET A 162 1 O MET A 162 N VAL A 126 SHEET 6 A 6 THR A 183 MET A 185 1 O ALA A 184 N VAL A 159 SHEET 1 B 6 VAL B 108 GLU B 110 0 SHEET 2 B 6 LYS B 78 ILE B 83 1 N ILE B 83 O LEU B 109 SHEET 3 B 6 SER B 47 PRO B 52 1 N ILE B 48 O LYS B 78 SHEET 4 B 6 LEU B 123 ILE B 127 1 O LEU B 125 N ILE B 49 SHEET 5 B 6 GLN B 158 LYS B 163 1 O MET B 162 N VAL B 126 SHEET 6 B 6 THR B 183 LEU B 187 1 O ALA B 184 N VAL B 159 SITE 1 AC1 3 ARG A 164 HOH A 356 HOH A 363 SITE 1 AC2 3 ARG B 164 HOH B 338 HOH B 362 SITE 1 AC3 30 GLY A 53 TYR A 54 GLY A 55 VAL A 86 SITE 2 AC3 30 ALA A 87 GLY A 88 ARG A 89 MET A 90 SITE 3 AC3 30 PRO A 91 GLY A 128 ALA A 129 ASN A 130 SITE 4 AC3 30 ASP A 131 THR A 132 ALA A 146 GLY A 147 SITE 5 AC3 30 LYS A 163 ARG A 164 SER A 165 VAL A 168 SITE 6 AC3 30 GLY A 169 TYR A 170 ASP A 189 ALA A 190 SITE 7 AC3 30 GOL A 220 HOH A 305 HOH A 328 HOH A 332 SITE 8 AC3 30 HOH A 385 HOH A 386 SITE 1 AC4 29 GLY B 53 TYR B 54 GLY B 55 ALA B 59 SITE 2 AC4 29 VAL B 86 ALA B 87 GLY B 88 ARG B 89 SITE 3 AC4 29 MET B 90 PRO B 91 GLY B 128 ALA B 129 SITE 4 AC4 29 ASN B 130 ASP B 131 THR B 132 LYS B 163 SITE 5 AC4 29 ARG B 164 SER B 165 VAL B 168 GLY B 169 SITE 6 AC4 29 TYR B 170 ASP B 189 ALA B 190 GOL B 230 SITE 7 AC4 29 HOH B 305 HOH B 312 HOH B 338 HOH B 348 SITE 8 AC4 29 HOH B 371 SITE 1 AC5 8 HIS A 84 VAL A 86 ASP A 131 MET A 148 SITE 2 AC5 8 PRO A 149 VAL A 150 TAP A 300 HOH A 376 SITE 1 AC6 6 HIS B 84 VAL B 86 ASP B 131 MET B 148 SITE 2 AC6 6 VAL B 150 TAP B 301 CRYST1 57.400 57.400 251.130 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017422 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017422 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003982 0.00000