HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 23-JUN-03 1PU1 TITLE SOLUTION STRUCTURE OF THE HYPOTHETICAL PROTEIN MTH677 FROM TITLE 2 METHANOTHERMOBACTER THERMAUTOTROPHICUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN MTH677; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMOBACTER THERMAUTOTROPHICUS; SOURCE 3 ORGANISM_TAXID: 145262; SOURCE 4 GENE: MTH677; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS STRUCTURAL GENOMICS, ALPHA AND BETA PROTEIN (A+B), UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR F.J.BLANCO,A.YEE,R.CAMPOS-OLIVAS,D.DEVOS,A.VALENCIA,C.H.ARROWSMITH, AUTHOR 2 M.RICO REVDAT 3 02-MAR-22 1PU1 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PU1 1 VERSN REVDAT 1 08-JUN-04 1PU1 0 JRNL AUTH F.J.BLANCO,A.YEE,R.CAMPOS-OLIVAS,A.R.ORTIZ,D.DEVOS, JRNL AUTH 2 A.VALENCIA,C.H.ARROWSMITH,M.RICO JRNL TITL SOLUTION STRUCTURE OF THE HYPOTHETICAL PROTEIN MTH677 FROM JRNL TITL 2 METHANOBACTERIUM THERMOAUTOTROPHICUM: A NOVEL {ALPHA}+{BETA} JRNL TITL 3 FOLD JRNL REF PROTEIN SCI. V. 13 1458 2004 JRNL REFN ISSN 0961-8368 JRNL PMID 15152082 JRNL DOI 10.1110/PS.04620504 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, AMBER 7.0 REMARK 3 AUTHORS : BRUKER (XWINNMR), UCSF (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NOE DERIVED DISTANCE CONSTRAINTS: 1020, REMARK 3 HYDROGEN BOND CONSTRAINTS: 44, ANGLE CONSTRAINTS: 165 REMARK 4 REMARK 4 1PU1 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019563. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.2MM U-15N PROTEIN, 25MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 7.0, 450MM REMARK 210 NACL, 10MM DTT, 20UM ZNCL2, 1MM REMARK 210 BENZAMIDINE, 90% H2O, 10% D2O; REMARK 210 1.0MM U-15N,13C PROTEIN, 25MM REMARK 210 SODIUM PHOSPHATE BUFFER PH 7.0, REMARK 210 450MM NACL, 10MM DTT, 20UM ZNCL2, REMARK 210 1MM BENZAMIDINE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 4D-13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHB REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.2, NMRVIEW 4, CYANA REMARK 210 1.0.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY PLUS MOLECULAR REMARK 210 MECHANICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 34 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 22 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 84 OD2 ASP A 87 1.36 REMARK 500 OD1 ASP A 12 HG SER A 15 1.37 REMARK 500 OE2 GLU A 57 HH TYR A 59 1.45 REMARK 500 O PHE A 17 HG1 THR A 21 1.57 REMARK 500 OD2 ASP A 76 HH21 ARG A 80 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 4 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 6 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 7 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 12 ARG A 80 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 12 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 13 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 14 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 16 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 17 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 19 ARG A 4 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 19 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 20 ARG A 80 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 21 ARG A 90 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 25 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 5.2 DEGREES REMARK 500 28 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 30 ARG A 29 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 37.58 -151.43 REMARK 500 1 LEU A 3 -153.78 -114.38 REMARK 500 1 ASP A 48 -43.89 62.74 REMARK 500 1 GLU A 62 41.12 -68.50 REMARK 500 1 LEU A 63 -32.92 -160.58 REMARK 500 1 PHE A 89 -31.56 -134.79 REMARK 500 2 ASP A 48 -44.61 66.70 REMARK 500 2 GLU A 62 19.74 -67.46 REMARK 500 2 PRO A 68 44.16 -73.21 REMARK 500 2 PHE A 89 -23.73 -142.06 REMARK 500 3 ARG A 4 -156.47 -114.80 REMARK 500 3 ASP A 48 -36.94 59.97 REMARK 500 3 GLU A 62 4.43 -64.94 REMARK 500 3 ARG A 90 -36.54 -137.26 REMARK 500 4 SER A 2 35.09 -142.42 REMARK 500 4 ASP A 48 -35.75 59.54 REMARK 500 4 GLU A 62 16.61 -69.73 REMARK 500 4 PRO A 68 41.96 -73.67 REMARK 500 4 LEU A 86 9.62 -66.56 REMARK 500 4 PHE A 89 -19.40 -142.57 REMARK 500 5 ARG A 4 -169.19 -116.67 REMARK 500 5 ASP A 48 -41.68 62.60 REMARK 500 5 GLU A 62 20.30 -66.66 REMARK 500 5 ARG A 90 -41.99 -134.62 REMARK 500 6 SER A 2 62.72 -150.69 REMARK 500 6 ASP A 48 -45.43 64.73 REMARK 500 6 PRO A 68 45.76 -74.25 REMARK 500 6 ARG A 90 -20.38 -143.97 REMARK 500 7 LYS A 5 108.23 -54.69 REMARK 500 7 ASP A 48 -33.05 64.64 REMARK 500 7 GLU A 62 9.87 -66.67 REMARK 500 7 PRO A 68 49.42 -72.67 REMARK 500 8 ASP A 48 -24.75 57.97 REMARK 500 8 GLU A 62 38.76 -68.25 REMARK 500 8 LEU A 63 -27.88 -160.56 REMARK 500 8 PRO A 68 42.17 -72.68 REMARK 500 8 ARG A 90 -16.88 -143.87 REMARK 500 9 SER A 2 -60.05 -171.94 REMARK 500 9 ARG A 4 -155.74 -102.58 REMARK 500 9 GLU A 8 44.32 -62.72 REMARK 500 9 ASP A 48 -27.10 62.79 REMARK 500 9 GLU A 62 17.19 -66.99 REMARK 500 9 ARG A 90 -46.72 -140.64 REMARK 500 10 SER A 2 -178.43 56.98 REMARK 500 10 LYS A 5 105.12 -52.75 REMARK 500 10 ASP A 48 -47.44 66.14 REMARK 500 10 GLU A 62 24.79 -69.23 REMARK 500 10 PRO A 68 47.72 -74.29 REMARK 500 10 PHE A 89 -64.42 -127.96 REMARK 500 11 SER A 2 103.92 -55.27 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 46 0.14 SIDE CHAIN REMARK 500 2 TYR A 46 0.11 SIDE CHAIN REMARK 500 3 TYR A 46 0.12 SIDE CHAIN REMARK 500 4 TYR A 59 0.08 SIDE CHAIN REMARK 500 5 ARG A 90 0.12 SIDE CHAIN REMARK 500 6 TYR A 46 0.15 SIDE CHAIN REMARK 500 7 ARG A 29 0.16 SIDE CHAIN REMARK 500 8 ARG A 29 0.09 SIDE CHAIN REMARK 500 9 ARG A 80 0.08 SIDE CHAIN REMARK 500 9 ARG A 90 0.08 SIDE CHAIN REMARK 500 12 TYR A 46 0.13 SIDE CHAIN REMARK 500 12 ARG A 90 0.15 SIDE CHAIN REMARK 500 13 TYR A 46 0.11 SIDE CHAIN REMARK 500 13 ARG A 90 0.10 SIDE CHAIN REMARK 500 14 TYR A 46 0.13 SIDE CHAIN REMARK 500 15 TYR A 46 0.09 SIDE CHAIN REMARK 500 18 TYR A 59 0.09 SIDE CHAIN REMARK 500 20 ARG A 29 0.08 SIDE CHAIN REMARK 500 24 ARG A 80 0.08 SIDE CHAIN REMARK 500 26 TYR A 46 0.13 SIDE CHAIN REMARK 500 29 TYR A 46 0.11 SIDE CHAIN REMARK 500 29 ARG A 80 0.09 SIDE CHAIN REMARK 500 29 ARG A 90 0.08 SIDE CHAIN REMARK 500 30 ARG A 80 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5704 RELATED DB: BMRB REMARK 900 1H, 13C, AND 15N ASSIGNMENT OF MTH677 PROTEIN FROM METHANOBACTERIUM REMARK 900 THERMOAUTOTROPHICUM DBREF 1PU1 A 1 91 UNP O26773 O26773_METTH 1 91 SEQADV 1PU1 GLY A -2 UNP O26773 CLONING ARTIFACT SEQADV 1PU1 SER A -1 UNP O26773 CLONING ARTIFACT SEQADV 1PU1 HIS A 0 UNP O26773 CLONING ARTIFACT SEQRES 1 A 94 GLY SER HIS MET SER LEU ARG LYS LEU THR GLU GLY ASP SEQRES 2 A 94 LEU ASP GLU ILE SER SER PHE LEU HIS ASN THR ILE SER SEQRES 3 A 94 ASP PHE ILE LEU LYS ARG VAL SER ALA LYS GLU ILE VAL SEQRES 4 A 94 ASP ILE ASP ILE THR VAL LEU VAL GLU TYR THR ASP GLU SEQRES 5 A 94 LEU LYS VAL ASP ILE SER ALA GLU LEU TYR LEU ASP GLU SEQRES 6 A 94 LEU SER ASP ALA ASP PRO GLY ILE VAL ASP GLU ALA VAL SEQRES 7 A 94 ASP ALA ALA TYR ARG SER LEU GLU SER PHE LEU ASP GLY SEQRES 8 A 94 PHE ARG GLU HELIX 1 1 THR A 7 LYS A 28 1 22 HELIX 2 2 GLY A 69 GLU A 91 1 23 SHEET 1 A 2 ILE A 35 TYR A 46 0 SHEET 2 A 2 LEU A 50 LEU A 60 -1 O ASP A 53 N LEU A 43 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1