data_1PU6 # _entry.id 1PU6 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1PU6 RCSB RCSB019568 WWPDB D_1000019568 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1PU7 '3,9-dimethyladenine bound to MagIII' unspecified PDB 1PU8 '1,N6-ethenoadenine bound to MagIII' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PU6 _pdbx_database_status.recvd_initial_deposition_date 2003-06-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Eichman, B.F.' 1 ;O'Rourke, E.J. ; 2 'Radicella, J.P.' 3 'Ellenberger, T.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal structures of 3-methyladenine DNA glycosylase MagIII and the recognition of alkylated bases' 'Embo J.' 22 4898 4909 2003 EMJODG UK 0261-4189 0897 ? 14517230 10.1093/emboj/cdg505 1 ;A NOVEL 3-METHYLADENINE DNA GLYCOSYLASE FROM HELICOBACTER PYLORI DEFINES A NEW CLASS WITHIN THE ENDONUCLEASE III FAMILY OF BASE EXCISION REPAIR GLYCOSYLASES ; J.Biol.Chem. 275 20077 20083 2000 JBCHA3 US 0021-9258 0071 ? ? 10.1074/jbc.M001071200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Eichman, B.F.' 1 primary ;O'Rourke, E.J. ; 2 primary 'Radicella, J.P.' 3 primary 'Ellenberger, T.' 4 1 ;O'ROURKE, E.J. ; 5 1 'CHEVALIER, C.' 6 1 'BOITEUX, S.' 7 1 'LABIGNE, A.' 8 1 'IELPI, L.' 9 1 'RADICELLA, J.P.' 10 # _cell.entry_id 1PU6 _cell.length_a 146.605 _cell.length_b 44.399 _cell.length_c 81.516 _cell.angle_alpha 90.00 _cell.angle_beta 106.40 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PU6 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '3-METHYLADENINE DNA GLYCOSYLASE' 25218.064 2 ? ? ? ? 2 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 1 ? ? ? ? 4 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 2 ? ? ? ? 5 water nat water 18.015 234 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHG(KCX)IVEFSKQKLELKL ; _entity_poly.pdbx_seq_one_letter_code_can ;VLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSGNILKDFQSFENFKQEVTREWLLDQKGIGKESADAILCYACAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 LEU n 1 3 ASP n 1 4 SER n 1 5 PHE n 1 6 GLU n 1 7 ILE n 1 8 LEU n 1 9 LYS n 1 10 ALA n 1 11 LEU n 1 12 LYS n 1 13 SER n 1 14 LEU n 1 15 ASP n 1 16 LEU n 1 17 LEU n 1 18 LYS n 1 19 ASN n 1 20 ALA n 1 21 PRO n 1 22 ALA n 1 23 TRP n 1 24 TRP n 1 25 TRP n 1 26 PRO n 1 27 ASN n 1 28 ALA n 1 29 LEU n 1 30 LYS n 1 31 PHE n 1 32 GLU n 1 33 ALA n 1 34 LEU n 1 35 LEU n 1 36 GLY n 1 37 ALA n 1 38 VAL n 1 39 LEU n 1 40 THR n 1 41 GLN n 1 42 ASN n 1 43 THR n 1 44 LYS n 1 45 PHE n 1 46 GLU n 1 47 ALA n 1 48 VAL n 1 49 LEU n 1 50 LYS n 1 51 SER n 1 52 LEU n 1 53 GLU n 1 54 ASN n 1 55 LEU n 1 56 LYS n 1 57 ASN n 1 58 ALA n 1 59 PHE n 1 60 ILE n 1 61 LEU n 1 62 GLU n 1 63 ASN n 1 64 ASP n 1 65 ASP n 1 66 GLU n 1 67 ILE n 1 68 ASN n 1 69 LEU n 1 70 LYS n 1 71 LYS n 1 72 ILE n 1 73 ALA n 1 74 TYR n 1 75 ILE n 1 76 GLU n 1 77 PHE n 1 78 SER n 1 79 LYS n 1 80 LEU n 1 81 ALA n 1 82 GLU n 1 83 CYS n 1 84 VAL n 1 85 ARG n 1 86 PRO n 1 87 SER n 1 88 GLY n 1 89 PHE n 1 90 TYR n 1 91 ASN n 1 92 GLN n 1 93 LYS n 1 94 ALA n 1 95 LYS n 1 96 ARG n 1 97 LEU n 1 98 ILE n 1 99 ASP n 1 100 LEU n 1 101 SER n 1 102 GLY n 1 103 ASN n 1 104 ILE n 1 105 LEU n 1 106 LYS n 1 107 ASP n 1 108 PHE n 1 109 GLN n 1 110 SER n 1 111 PHE n 1 112 GLU n 1 113 ASN n 1 114 PHE n 1 115 LYS n 1 116 GLN n 1 117 GLU n 1 118 VAL n 1 119 THR n 1 120 ARG n 1 121 GLU n 1 122 TRP n 1 123 LEU n 1 124 LEU n 1 125 ASP n 1 126 GLN n 1 127 LYS n 1 128 GLY n 1 129 ILE n 1 130 GLY n 1 131 LYS n 1 132 GLU n 1 133 SER n 1 134 ALA n 1 135 ASP n 1 136 ALA n 1 137 ILE n 1 138 LEU n 1 139 CYS n 1 140 TYR n 1 141 ALA n 1 142 CYS n 1 143 ALA n 1 144 LYS n 1 145 GLU n 1 146 VAL n 1 147 MET n 1 148 VAL n 1 149 VAL n 1 150 ASP n 1 151 LYS n 1 152 TYR n 1 153 SER n 1 154 TYR n 1 155 LEU n 1 156 PHE n 1 157 LEU n 1 158 LYS n 1 159 LYS n 1 160 LEU n 1 161 GLY n 1 162 ILE n 1 163 GLU n 1 164 ILE n 1 165 GLU n 1 166 ASP n 1 167 TYR n 1 168 ASP n 1 169 GLU n 1 170 LEU n 1 171 GLN n 1 172 HIS n 1 173 PHE n 1 174 PHE n 1 175 GLU n 1 176 LYS n 1 177 GLY n 1 178 VAL n 1 179 GLN n 1 180 GLU n 1 181 ASN n 1 182 LEU n 1 183 ASN n 1 184 SER n 1 185 ALA n 1 186 LEU n 1 187 ALA n 1 188 LEU n 1 189 TYR n 1 190 GLU n 1 191 ASN n 1 192 THR n 1 193 ILE n 1 194 SER n 1 195 LEU n 1 196 ALA n 1 197 GLN n 1 198 LEU n 1 199 TYR n 1 200 ALA n 1 201 ARG n 1 202 PHE n 1 203 HIS n 1 204 GLY n 1 205 KCX n 1 206 ILE n 1 207 VAL n 1 208 GLU n 1 209 PHE n 1 210 SER n 1 211 LYS n 1 212 GLN n 1 213 LYS n 1 214 LEU n 1 215 GLU n 1 216 LEU n 1 217 LYS n 1 218 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Helicobacter _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 13-5 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Helicobacter pylori' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 210 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector PGEX-6P-1 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O25323_HELPY _struct_ref.pdbx_db_accession O25323 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MLDSFEILKALKSLDLLKNAPAWWWPNALKFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKL AECVRPSGFYNQKAKRLIDLSKNILKDFQSFENFKQEVTKEWLLDQKGIGKESADAILCYVCAKEVMVVDKYSYLFLKKL GIEIEDYDELQHFFEKGVQENLNSALALYENTISLAQLYARFHGKIVEFSKQKLELKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PU6 A 1 ? 218 ? O25323 1 ? 218 ? 1 218 2 1 1PU6 B 1 ? 218 ? O25323 1 ? 218 ? 1 218 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1PU6 VAL A 1 ? UNP O25323 MET 1 'SEE REMARK 999' 1 1 1 1PU6 GLY A 102 ? UNP O25323 LYS 102 'SEE REMARK 999' 102 2 1 1PU6 ARG A 120 ? UNP O25323 LYS 120 'SEE REMARK 999' 120 3 1 1PU6 ALA A 141 ? UNP O25323 VAL 141 'SEE REMARK 999' 141 4 1 1PU6 KCX A 205 ? UNP O25323 LYS 205 'MODIFIED RESIDUE' 205 5 2 1PU6 VAL B 1 ? UNP O25323 MET 1 'SEE REMARK 999' 1 6 2 1PU6 GLY B 102 ? UNP O25323 LYS 102 'SEE REMARK 999' 102 7 2 1PU6 ARG B 120 ? UNP O25323 LYS 120 'SEE REMARK 999' 120 8 2 1PU6 ALA B 141 ? UNP O25323 VAL 141 'SEE REMARK 999' 141 9 2 1PU6 KCX B 205 ? UNP O25323 LYS 205 'MODIFIED RESIDUE' 205 10 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 KCX 'L-peptide linking' n 'LYSINE NZ-CARBOXYLIC ACID' ? 'C7 H14 N2 O4' 190.197 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PU6 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.52 _exptl_crystal.density_percent_sol 51.24 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details 'PEG 4000, HEPES, MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 110 ? 1 2 110 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 CCD 'ADSC QUANTUM 210' 2002-01-11 ? 2 CCD CUSTOM-MADE 2002-07-19 ? # loop_ _diffrn_radiation.diffrn_id _diffrn_radiation.wavelength_id _diffrn_radiation.pdbx_monochromatic_or_laue_m_l _diffrn_radiation.monochromator _diffrn_radiation.pdbx_diffrn_protocol _diffrn_radiation.pdbx_scattering_type 2 1 M ? MAD x-ray 1 1 M ? ? x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9450 1.0 2 1.0000 1.0 3 0.9686 1.0 4 1.0083 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 SYNCHROTRON 'CHESS BEAMLINE A1' CHESS A1 ? 0.9450 2 SYNCHROTRON 'NSLS BEAMLINE X12C' NSLS X12C ? '1.0000, 0.9686, 1.0083' # _reflns.entry_id 1PU6 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 1.64 _reflns.number_obs 60643 _reflns.number_all 60643 _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.099 _reflns.pdbx_netI_over_sigmaI 21.8 _reflns.B_iso_Wilson_estimate 19.50 _reflns.pdbx_redundancy 8.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 2,1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.64 _reflns_shell.d_res_low 1.71 _reflns_shell.percent_possible_all 99.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.337 _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_redundancy 5.7 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PU6 _refine.ls_number_reflns_obs 57518 _refine.ls_number_reflns_all 57518 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.00 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 24.41 _refine.ls_d_res_high 1.64 _refine.ls_percent_reflns_obs 99.94 _refine.ls_R_factor_obs 0.15301 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15126 _refine.ls_R_factor_R_free 0.18517 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.2 _refine.ls_number_reflns_R_free 3124 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.960 _refine.B_iso_mean 22.947 _refine.aniso_B[1][1] 0.20 _refine.aniso_B[2][2] 0.26 _refine.aniso_B[3][3] -0.64 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.32 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;ANISOU PARAMETERS WERE DERIVED FROM REFINED TLS PARAMETERS (5 TLS GROUPS) AND HELD FIXED DURING REFINEMENT ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.100 _refine.pdbx_overall_ESU_R_Free 0.079 _refine.overall_SU_ML 0.046 _refine.overall_SU_B 1.326 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 2 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 3474 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 254 _refine_hist.number_atoms_total 3729 _refine_hist.d_res_high 1.64 _refine_hist.d_res_low 24.41 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.022 ? 3557 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.602 1.968 ? 4799 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 4.932 5.000 ? 432 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.160 0.200 ? 537 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.007 0.020 ? 2622 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.213 0.200 ? 1515 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.129 0.200 ? 132 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.163 0.200 ? 48 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.140 0.200 ? 12 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1.943 1.500 ? 2155 'X-RAY DIFFRACTION' ? r_mcangle_it 3.065 2.000 ? 3439 'X-RAY DIFFRACTION' ? r_scbond_it 4.799 3.000 ? 1402 'X-RAY DIFFRACTION' ? r_scangle_it 6.847 4.500 ? 1360 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.638 _refine_ls_shell.d_res_low 1.681 _refine_ls_shell.number_reflns_R_work 2809 _refine_ls_shell.R_factor_R_work 0.143 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.194 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 150 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1PU6 _struct.title 'Crystal structure of H.pylori 3-methyladenine DNA glycosylase (MagIII)' _struct.pdbx_descriptor '3-METHYLADENINE DNA GLYCOSYLASE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PU6 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Helix-hairpin-helix, 3-Methyladenine, BASE EXCISION REPAIR, GLYCOSYLASE, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 5 ? H N N 5 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 3 ? SER A 13 ? ASP A 3 SER A 13 1 ? 11 HELX_P HELX_P2 2 LYS A 30 ? THR A 40 ? LYS A 30 THR A 40 1 ? 11 HELX_P HELX_P3 3 LYS A 44 ? ALA A 58 ? LYS A 44 ALA A 58 1 ? 15 HELX_P HELX_P4 4 ASP A 64 ? ILE A 75 ? ASP A 64 ILE A 75 1 ? 12 HELX_P HELX_P5 5 GLU A 76 ? VAL A 84 ? GLU A 76 VAL A 84 1 ? 9 HELX_P HELX_P6 6 ARG A 85 ? GLY A 88 ? ARG A 85 GLY A 88 5 ? 4 HELX_P HELX_P7 7 PHE A 89 ? GLN A 109 ? PHE A 89 GLN A 109 1 ? 21 HELX_P HELX_P8 8 SER A 110 ? VAL A 118 ? SER A 110 VAL A 118 1 ? 9 HELX_P HELX_P9 9 THR A 119 ? ASP A 125 ? THR A 119 ASP A 125 1 ? 7 HELX_P HELX_P10 10 GLY A 130 ? ALA A 141 ? GLY A 130 ALA A 141 1 ? 12 HELX_P HELX_P11 11 ASP A 150 ? LEU A 160 ? ASP A 150 LEU A 160 1 ? 11 HELX_P HELX_P12 12 ASP A 166 ? GLU A 180 ? ASP A 166 GLU A 180 1 ? 15 HELX_P HELX_P13 13 ASN A 181 ? LEU A 188 ? ASN A 181 LEU A 188 1 ? 8 HELX_P HELX_P14 14 SER A 194 ? LEU A 216 ? SER A 194 LEU A 216 1 ? 23 HELX_P HELX_P15 15 ASP B 3 ? SER B 13 ? ASP B 3 SER B 13 1 ? 11 HELX_P HELX_P16 16 LYS B 30 ? THR B 40 ? LYS B 30 THR B 40 1 ? 11 HELX_P HELX_P17 17 LYS B 44 ? ALA B 58 ? LYS B 44 ALA B 58 1 ? 15 HELX_P HELX_P18 18 ASP B 64 ? ILE B 75 ? ASP B 64 ILE B 75 1 ? 12 HELX_P HELX_P19 19 GLU B 76 ? VAL B 84 ? GLU B 76 VAL B 84 1 ? 9 HELX_P HELX_P20 20 ARG B 85 ? GLY B 88 ? ARG B 85 GLY B 88 5 ? 4 HELX_P HELX_P21 21 PHE B 89 ? GLN B 109 ? PHE B 89 GLN B 109 1 ? 21 HELX_P HELX_P22 22 SER B 110 ? VAL B 118 ? SER B 110 VAL B 118 1 ? 9 HELX_P HELX_P23 23 THR B 119 ? ASP B 125 ? THR B 119 ASP B 125 1 ? 7 HELX_P HELX_P24 24 GLY B 130 ? ALA B 141 ? GLY B 130 ALA B 141 1 ? 12 HELX_P HELX_P25 25 ASP B 150 ? LEU B 160 ? ASP B 150 LEU B 160 1 ? 11 HELX_P HELX_P26 26 ASP B 166 ? GLU B 180 ? ASP B 166 GLU B 180 1 ? 15 HELX_P HELX_P27 27 ASN B 181 ? LEU B 188 ? ASN B 181 LEU B 188 1 ? 8 HELX_P HELX_P28 28 SER B 194 ? LEU B 216 ? SER B 194 LEU B 216 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A GLY 204 C ? ? ? 1_555 A KCX 205 N ? ? A GLY 204 A KCX 205 1_555 ? ? ? ? ? ? ? 1.335 ? covale2 covale ? ? A KCX 205 C ? ? ? 1_555 A ILE 206 N ? ? A KCX 205 A ILE 206 1_555 ? ? ? ? ? ? ? 1.344 ? covale3 covale ? ? B GLY 204 C ? ? ? 1_555 B KCX 205 N ? ? B GLY 204 B KCX 205 1_555 ? ? ? ? ? ? ? 1.343 ? covale4 covale ? ? B KCX 205 C ? ? ? 1_555 B ILE 206 N ? ? B KCX 205 B ILE 206 1_555 ? ? ? ? ? ? ? 1.323 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE CL A 301' AC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE BME A 302' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD B 303' AC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MPD B 304' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLN A 41 ? GLN A 41 . ? 1_555 ? 2 AC1 3 ASN A 42 ? ASN A 42 . ? 1_555 ? 3 AC1 3 ARG A 96 ? ARG A 96 . ? 1_555 ? 4 AC2 6 TRP A 24 ? TRP A 24 . ? 1_555 ? 5 AC2 6 TRP A 25 ? TRP A 25 . ? 1_555 ? 6 AC2 6 THR A 40 ? THR A 40 . ? 1_555 ? 7 AC2 6 PHE A 45 ? PHE A 45 . ? 1_555 ? 8 AC2 6 HOH G . ? HOH A 373 . ? 1_555 ? 9 AC2 6 HOH G . ? HOH A 481 . ? 1_555 ? 10 AC3 3 ALA A 187 ? ALA A 187 . ? 2_756 ? 11 AC3 3 GLU A 190 ? GLU A 190 . ? 2_756 ? 12 AC3 3 HOH H . ? HOH B 468 . ? 1_555 ? 13 AC4 4 SER A 184 ? SER A 184 . ? 2_756 ? 14 AC4 4 ALA A 187 ? ALA A 187 . ? 2_756 ? 15 AC4 4 PHE B 209 ? PHE B 209 . ? 1_555 ? 16 AC4 4 GLN B 212 ? GLN B 212 . ? 1_555 ? # _database_PDB_matrix.entry_id 1PU6 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PU6 _atom_sites.fract_transf_matrix[1][1] 0.006821 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.002008 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022523 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012788 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 ? ? ? A . n A 1 2 LEU 2 2 2 LEU LEU A . n A 1 3 ASP 3 3 3 ASP ASP A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LEU 8 8 8 LEU LEU A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 LEU 16 16 16 LEU LEU A . n A 1 17 LEU 17 17 17 LEU LEU A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 TRP 23 23 23 TRP TRP A . n A 1 24 TRP 24 24 24 TRP TRP A . n A 1 25 TRP 25 25 25 TRP TRP A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 GLU 32 32 32 GLU GLU A . n A 1 33 ALA 33 33 33 ALA ALA A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ALA 37 37 37 ALA ALA A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 THR 40 40 40 THR THR A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 THR 43 43 43 THR THR A . n A 1 44 LYS 44 44 44 LYS LYS A . n A 1 45 PHE 45 45 45 PHE PHE A . n A 1 46 GLU 46 46 46 GLU GLU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 LEU 52 52 52 LEU LEU A . n A 1 53 GLU 53 53 53 GLU GLU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 PHE 59 59 59 PHE PHE A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 LEU 61 61 61 LEU LEU A . n A 1 62 GLU 62 62 62 GLU GLU A . n A 1 63 ASN 63 63 63 ASN ASN A . n A 1 64 ASP 64 64 64 ASP ASP A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 GLU 66 66 66 GLU GLU A . n A 1 67 ILE 67 67 67 ILE ILE A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 TYR 74 74 74 TYR TYR A . n A 1 75 ILE 75 75 75 ILE ILE A . n A 1 76 GLU 76 76 76 GLU GLU A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 SER 78 78 78 SER SER A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 LEU 80 80 80 LEU LEU A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 CYS 83 83 83 CYS CYS A . n A 1 84 VAL 84 84 84 VAL VAL A . n A 1 85 ARG 85 85 85 ARG ARG A . n A 1 86 PRO 86 86 86 PRO PRO A . n A 1 87 SER 87 87 87 SER SER A . n A 1 88 GLY 88 88 88 GLY GLY A . n A 1 89 PHE 89 89 89 PHE PHE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 ASN 91 91 91 ASN ASN A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 LYS 93 93 93 LYS LYS A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 LYS 95 95 95 LYS LYS A . n A 1 96 ARG 96 96 96 ARG ARG A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 SER 101 101 101 SER SER A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 LYS 106 106 106 LYS LYS A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 PHE 108 108 108 PHE PHE A . n A 1 109 GLN 109 109 109 GLN GLN A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 PHE 111 111 111 PHE PHE A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ASN 113 113 113 ASN ASN A . n A 1 114 PHE 114 114 114 PHE PHE A . n A 1 115 LYS 115 115 115 LYS LYS A . n A 1 116 GLN 116 116 116 GLN GLN A . n A 1 117 GLU 117 117 117 GLU GLU A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 THR 119 119 119 THR THR A . n A 1 120 ARG 120 120 120 ARG ARG A . n A 1 121 GLU 121 121 121 GLU GLU A . n A 1 122 TRP 122 122 122 TRP TRP A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 LEU 124 124 124 LEU LEU A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 GLN 126 126 126 GLN GLN A . n A 1 127 LYS 127 127 127 LYS LYS A . n A 1 128 GLY 128 128 128 GLY GLY A . n A 1 129 ILE 129 129 129 ILE ILE A . n A 1 130 GLY 130 130 130 GLY GLY A . n A 1 131 LYS 131 131 131 LYS LYS A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 SER 133 133 133 SER SER A . n A 1 134 ALA 134 134 134 ALA ALA A . n A 1 135 ASP 135 135 135 ASP ASP A . n A 1 136 ALA 136 136 136 ALA ALA A . n A 1 137 ILE 137 137 137 ILE ILE A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 CYS 139 139 139 CYS CYS A . n A 1 140 TYR 140 140 140 TYR TYR A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 CYS 142 142 142 CYS CYS A . n A 1 143 ALA 143 143 143 ALA ALA A . n A 1 144 LYS 144 144 144 LYS LYS A . n A 1 145 GLU 145 145 145 GLU GLU A . n A 1 146 VAL 146 146 146 VAL VAL A . n A 1 147 MET 147 147 147 MET MET A . n A 1 148 VAL 148 148 148 VAL VAL A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 LYS 151 151 151 LYS LYS A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 SER 153 153 153 SER SER A . n A 1 154 TYR 154 154 154 TYR TYR A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 PHE 156 156 156 PHE PHE A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 LYS 158 158 158 LYS LYS A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 ILE 164 164 164 ILE ILE A . n A 1 165 GLU 165 165 165 GLU GLU A . n A 1 166 ASP 166 166 166 ASP ASP A . n A 1 167 TYR 167 167 167 TYR TYR A . n A 1 168 ASP 168 168 168 ASP ASP A . n A 1 169 GLU 169 169 169 GLU GLU A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 HIS 172 172 172 HIS HIS A . n A 1 173 PHE 173 173 173 PHE PHE A . n A 1 174 PHE 174 174 174 PHE PHE A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 GLY 177 177 177 GLY GLY A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 GLN 179 179 179 GLN GLN A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 LEU 182 182 182 LEU LEU A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 ALA 185 185 185 ALA ALA A . n A 1 186 LEU 186 186 186 LEU LEU A . n A 1 187 ALA 187 187 187 ALA ALA A . n A 1 188 LEU 188 188 188 LEU LEU A . n A 1 189 TYR 189 189 189 TYR TYR A . n A 1 190 GLU 190 190 190 GLU GLU A . n A 1 191 ASN 191 191 191 ASN ASN A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 ILE 193 193 193 ILE ILE A . n A 1 194 SER 194 194 194 SER SER A . n A 1 195 LEU 195 195 195 LEU LEU A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 GLN 197 197 197 GLN GLN A . n A 1 198 LEU 198 198 198 LEU LEU A . n A 1 199 TYR 199 199 199 TYR TYR A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 ARG 201 201 201 ARG ARG A . n A 1 202 PHE 202 202 202 PHE PHE A . n A 1 203 HIS 203 203 203 HIS HIS A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 KCX 205 205 205 KCX KCX A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 VAL 207 207 207 VAL VAL A . n A 1 208 GLU 208 208 208 GLU GLU A . n A 1 209 PHE 209 209 209 PHE PHE A . n A 1 210 SER 210 210 210 SER SER A . n A 1 211 LYS 211 211 211 LYS LYS A . n A 1 212 GLN 212 212 212 GLN GLN A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 GLU 215 215 215 GLU GLU A . n A 1 216 LEU 216 216 216 LEU LEU A . n A 1 217 LYS 217 217 217 LYS LYS A . n A 1 218 LEU 218 218 218 LEU LEU A . n B 1 1 VAL 1 1 ? ? ? B . n B 1 2 LEU 2 2 2 LEU LEU B . n B 1 3 ASP 3 3 3 ASP ASP B . n B 1 4 SER 4 4 4 SER SER B . n B 1 5 PHE 5 5 5 PHE PHE B . n B 1 6 GLU 6 6 6 GLU GLU B . n B 1 7 ILE 7 7 7 ILE ILE B . n B 1 8 LEU 8 8 8 LEU LEU B . n B 1 9 LYS 9 9 9 LYS LYS B . n B 1 10 ALA 10 10 10 ALA ALA B . n B 1 11 LEU 11 11 11 LEU LEU B . n B 1 12 LYS 12 12 12 LYS LYS B . n B 1 13 SER 13 13 13 SER SER B . n B 1 14 LEU 14 14 14 LEU LEU B . n B 1 15 ASP 15 15 15 ASP ASP B . n B 1 16 LEU 16 16 16 LEU LEU B . n B 1 17 LEU 17 17 17 LEU LEU B . n B 1 18 LYS 18 18 18 LYS LYS B . n B 1 19 ASN 19 19 19 ASN ASN B . n B 1 20 ALA 20 20 20 ALA ALA B . n B 1 21 PRO 21 21 21 PRO PRO B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 TRP 23 23 23 TRP TRP B . n B 1 24 TRP 24 24 24 TRP TRP B . n B 1 25 TRP 25 25 25 TRP TRP B . n B 1 26 PRO 26 26 26 PRO PRO B . n B 1 27 ASN 27 27 27 ASN ASN B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 LEU 29 29 29 LEU LEU B . n B 1 30 LYS 30 30 30 LYS LYS B . n B 1 31 PHE 31 31 31 PHE PHE B . n B 1 32 GLU 32 32 32 GLU GLU B . n B 1 33 ALA 33 33 33 ALA ALA B . n B 1 34 LEU 34 34 34 LEU LEU B . n B 1 35 LEU 35 35 35 LEU LEU B . n B 1 36 GLY 36 36 36 GLY GLY B . n B 1 37 ALA 37 37 37 ALA ALA B . n B 1 38 VAL 38 38 38 VAL VAL B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 THR 40 40 40 THR THR B . n B 1 41 GLN 41 41 41 GLN GLN B . n B 1 42 ASN 42 42 42 ASN ASN B . n B 1 43 THR 43 43 43 THR THR B . n B 1 44 LYS 44 44 44 LYS LYS B . n B 1 45 PHE 45 45 45 PHE PHE B . n B 1 46 GLU 46 46 46 GLU GLU B . n B 1 47 ALA 47 47 47 ALA ALA B . n B 1 48 VAL 48 48 48 VAL VAL B . n B 1 49 LEU 49 49 49 LEU LEU B . n B 1 50 LYS 50 50 50 LYS LYS B . n B 1 51 SER 51 51 51 SER SER B . n B 1 52 LEU 52 52 52 LEU LEU B . n B 1 53 GLU 53 53 53 GLU GLU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 LEU 55 55 55 LEU LEU B . n B 1 56 LYS 56 56 56 LYS LYS B . n B 1 57 ASN 57 57 57 ASN ASN B . n B 1 58 ALA 58 58 58 ALA ALA B . n B 1 59 PHE 59 59 59 PHE PHE B . n B 1 60 ILE 60 60 60 ILE ILE B . n B 1 61 LEU 61 61 61 LEU LEU B . n B 1 62 GLU 62 62 62 GLU GLU B . n B 1 63 ASN 63 63 63 ASN ASN B . n B 1 64 ASP 64 64 64 ASP ASP B . n B 1 65 ASP 65 65 65 ASP ASP B . n B 1 66 GLU 66 66 66 GLU GLU B . n B 1 67 ILE 67 67 67 ILE ILE B . n B 1 68 ASN 68 68 68 ASN ASN B . n B 1 69 LEU 69 69 69 LEU LEU B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 LYS 71 71 71 LYS LYS B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 ALA 73 73 73 ALA ALA B . n B 1 74 TYR 74 74 74 TYR TYR B . n B 1 75 ILE 75 75 75 ILE ILE B . n B 1 76 GLU 76 76 76 GLU GLU B . n B 1 77 PHE 77 77 77 PHE PHE B . n B 1 78 SER 78 78 78 SER SER B . n B 1 79 LYS 79 79 79 LYS LYS B . n B 1 80 LEU 80 80 80 LEU LEU B . n B 1 81 ALA 81 81 81 ALA ALA B . n B 1 82 GLU 82 82 82 GLU GLU B . n B 1 83 CYS 83 83 83 CYS CYS B . n B 1 84 VAL 84 84 84 VAL VAL B . n B 1 85 ARG 85 85 85 ARG ARG B . n B 1 86 PRO 86 86 86 PRO PRO B . n B 1 87 SER 87 87 87 SER SER B . n B 1 88 GLY 88 88 88 GLY GLY B . n B 1 89 PHE 89 89 89 PHE PHE B . n B 1 90 TYR 90 90 90 TYR TYR B . n B 1 91 ASN 91 91 91 ASN ASN B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 LYS 93 93 93 LYS LYS B . n B 1 94 ALA 94 94 94 ALA ALA B . n B 1 95 LYS 95 95 95 LYS LYS B . n B 1 96 ARG 96 96 96 ARG ARG B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ILE 98 98 98 ILE ILE B . n B 1 99 ASP 99 99 99 ASP ASP B . n B 1 100 LEU 100 100 100 LEU LEU B . n B 1 101 SER 101 101 101 SER SER B . n B 1 102 GLY 102 102 102 GLY GLY B . n B 1 103 ASN 103 103 103 ASN ASN B . n B 1 104 ILE 104 104 104 ILE ILE B . n B 1 105 LEU 105 105 105 LEU LEU B . n B 1 106 LYS 106 106 106 LYS LYS B . n B 1 107 ASP 107 107 107 ASP ASP B . n B 1 108 PHE 108 108 108 PHE PHE B . n B 1 109 GLN 109 109 109 GLN GLN B . n B 1 110 SER 110 110 110 SER SER B . n B 1 111 PHE 111 111 111 PHE PHE B . n B 1 112 GLU 112 112 112 GLU GLU B . n B 1 113 ASN 113 113 113 ASN ASN B . n B 1 114 PHE 114 114 114 PHE PHE B . n B 1 115 LYS 115 115 115 LYS LYS B . n B 1 116 GLN 116 116 116 GLN GLN B . n B 1 117 GLU 117 117 117 GLU GLU B . n B 1 118 VAL 118 118 118 VAL VAL B . n B 1 119 THR 119 119 119 THR THR B . n B 1 120 ARG 120 120 120 ARG ARG B . n B 1 121 GLU 121 121 121 GLU GLU B . n B 1 122 TRP 122 122 122 TRP TRP B . n B 1 123 LEU 123 123 123 LEU LEU B . n B 1 124 LEU 124 124 124 LEU LEU B . n B 1 125 ASP 125 125 125 ASP ASP B . n B 1 126 GLN 126 126 126 GLN GLN B . n B 1 127 LYS 127 127 127 LYS LYS B . n B 1 128 GLY 128 128 128 GLY GLY B . n B 1 129 ILE 129 129 129 ILE ILE B . n B 1 130 GLY 130 130 130 GLY GLY B . n B 1 131 LYS 131 131 131 LYS LYS B . n B 1 132 GLU 132 132 132 GLU GLU B . n B 1 133 SER 133 133 133 SER SER B . n B 1 134 ALA 134 134 134 ALA ALA B . n B 1 135 ASP 135 135 135 ASP ASP B . n B 1 136 ALA 136 136 136 ALA ALA B . n B 1 137 ILE 137 137 137 ILE ILE B . n B 1 138 LEU 138 138 138 LEU LEU B . n B 1 139 CYS 139 139 139 CYS CYS B . n B 1 140 TYR 140 140 140 TYR TYR B . n B 1 141 ALA 141 141 141 ALA ALA B . n B 1 142 CYS 142 142 142 CYS CYS B . n B 1 143 ALA 143 143 143 ALA ALA B . n B 1 144 LYS 144 144 144 LYS LYS B . n B 1 145 GLU 145 145 145 GLU GLU B . n B 1 146 VAL 146 146 146 VAL VAL B . n B 1 147 MET 147 147 147 MET MET B . n B 1 148 VAL 148 148 148 VAL VAL B . n B 1 149 VAL 149 149 149 VAL VAL B . n B 1 150 ASP 150 150 150 ASP ASP B . n B 1 151 LYS 151 151 151 LYS LYS B . n B 1 152 TYR 152 152 152 TYR TYR B . n B 1 153 SER 153 153 153 SER SER B . n B 1 154 TYR 154 154 154 TYR TYR B . n B 1 155 LEU 155 155 155 LEU LEU B . n B 1 156 PHE 156 156 156 PHE PHE B . n B 1 157 LEU 157 157 157 LEU LEU B . n B 1 158 LYS 158 158 158 LYS LYS B . n B 1 159 LYS 159 159 159 LYS LYS B . n B 1 160 LEU 160 160 160 LEU LEU B . n B 1 161 GLY 161 161 161 GLY GLY B . n B 1 162 ILE 162 162 162 ILE ILE B . n B 1 163 GLU 163 163 163 GLU GLU B . n B 1 164 ILE 164 164 164 ILE ILE B . n B 1 165 GLU 165 165 165 GLU GLU B . n B 1 166 ASP 166 166 166 ASP ASP B . n B 1 167 TYR 167 167 167 TYR TYR B . n B 1 168 ASP 168 168 168 ASP ASP B . n B 1 169 GLU 169 169 169 GLU GLU B . n B 1 170 LEU 170 170 170 LEU LEU B . n B 1 171 GLN 171 171 171 GLN GLN B . n B 1 172 HIS 172 172 172 HIS HIS B . n B 1 173 PHE 173 173 173 PHE PHE B . n B 1 174 PHE 174 174 174 PHE PHE B . n B 1 175 GLU 175 175 175 GLU GLU B . n B 1 176 LYS 176 176 176 LYS LYS B . n B 1 177 GLY 177 177 177 GLY GLY B . n B 1 178 VAL 178 178 178 VAL VAL B . n B 1 179 GLN 179 179 179 GLN GLN B . n B 1 180 GLU 180 180 180 GLU GLU B . n B 1 181 ASN 181 181 181 ASN ASN B . n B 1 182 LEU 182 182 182 LEU LEU B . n B 1 183 ASN 183 183 183 ASN ASN B . n B 1 184 SER 184 184 184 SER SER B . n B 1 185 ALA 185 185 185 ALA ALA B . n B 1 186 LEU 186 186 186 LEU LEU B . n B 1 187 ALA 187 187 187 ALA ALA B . n B 1 188 LEU 188 188 188 LEU LEU B . n B 1 189 TYR 189 189 189 TYR TYR B . n B 1 190 GLU 190 190 190 GLU GLU B . n B 1 191 ASN 191 191 191 ASN ASN B . n B 1 192 THR 192 192 192 THR THR B . n B 1 193 ILE 193 193 193 ILE ILE B . n B 1 194 SER 194 194 194 SER SER B . n B 1 195 LEU 195 195 195 LEU LEU B . n B 1 196 ALA 196 196 196 ALA ALA B . n B 1 197 GLN 197 197 197 GLN GLN B . n B 1 198 LEU 198 198 198 LEU LEU B . n B 1 199 TYR 199 199 199 TYR TYR B . n B 1 200 ALA 200 200 200 ALA ALA B . n B 1 201 ARG 201 201 201 ARG ARG B . n B 1 202 PHE 202 202 202 PHE PHE B . n B 1 203 HIS 203 203 203 HIS HIS B . n B 1 204 GLY 204 204 204 GLY GLY B . n B 1 205 KCX 205 205 205 KCX KCX B . n B 1 206 ILE 206 206 206 ILE ILE B . n B 1 207 VAL 207 207 207 VAL VAL B . n B 1 208 GLU 208 208 208 GLU GLU B . n B 1 209 PHE 209 209 209 PHE PHE B . n B 1 210 SER 210 210 210 SER SER B . n B 1 211 LYS 211 211 211 LYS LYS B . n B 1 212 GLN 212 212 212 GLN GLN B . n B 1 213 LYS 213 213 213 LYS LYS B . n B 1 214 LEU 214 214 214 LEU LEU B . n B 1 215 GLU 215 215 215 GLU GLU B . n B 1 216 LEU 216 216 216 LEU LEU B . n B 1 217 LYS 217 217 217 LYS LYS B . n B 1 218 LEU 218 218 218 LEU LEU B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CL 1 301 301 CL CL A . D 3 BME 1 302 302 BME SEO A . E 4 MPD 1 303 303 MPD MPD B . F 4 MPD 1 304 304 MPD MPD B . G 5 HOH 1 305 305 HOH HOH A . G 5 HOH 2 307 307 HOH HOH A . G 5 HOH 3 308 308 HOH HOH A . G 5 HOH 4 309 309 HOH HOH A . G 5 HOH 5 311 311 HOH HOH A . G 5 HOH 6 313 313 HOH HOH A . G 5 HOH 7 314 314 HOH HOH A . G 5 HOH 8 316 316 HOH HOH A . G 5 HOH 9 317 317 HOH HOH A . G 5 HOH 10 319 319 HOH HOH A . G 5 HOH 11 320 320 HOH HOH A . G 5 HOH 12 324 324 HOH HOH A . G 5 HOH 13 325 325 HOH HOH A . G 5 HOH 14 326 326 HOH HOH A . G 5 HOH 15 327 327 HOH HOH A . G 5 HOH 16 330 330 HOH HOH A . G 5 HOH 17 333 333 HOH HOH A . G 5 HOH 18 334 334 HOH HOH A . G 5 HOH 19 335 335 HOH HOH A . G 5 HOH 20 336 336 HOH HOH A . G 5 HOH 21 338 338 HOH HOH A . G 5 HOH 22 340 340 HOH HOH A . G 5 HOH 23 342 342 HOH HOH A . G 5 HOH 24 344 344 HOH HOH A . G 5 HOH 25 346 346 HOH HOH A . G 5 HOH 26 347 347 HOH HOH A . G 5 HOH 27 348 348 HOH HOH A . G 5 HOH 28 351 351 HOH HOH A . G 5 HOH 29 352 352 HOH HOH A . G 5 HOH 30 356 356 HOH HOH A . G 5 HOH 31 357 357 HOH HOH A . G 5 HOH 32 358 358 HOH HOH A . G 5 HOH 33 363 363 HOH HOH A . G 5 HOH 34 364 364 HOH HOH A . G 5 HOH 35 365 365 HOH HOH A . G 5 HOH 36 367 367 HOH HOH A . G 5 HOH 37 368 368 HOH HOH A . G 5 HOH 38 369 369 HOH HOH A . G 5 HOH 39 370 370 HOH HOH A . G 5 HOH 40 371 371 HOH HOH A . G 5 HOH 41 372 372 HOH HOH A . G 5 HOH 42 373 373 HOH HOH A . G 5 HOH 43 374 374 HOH HOH A . G 5 HOH 44 379 379 HOH HOH A . G 5 HOH 45 380 380 HOH HOH A . G 5 HOH 46 381 381 HOH HOH A . G 5 HOH 47 382 382 HOH HOH A . G 5 HOH 48 383 383 HOH HOH A . G 5 HOH 49 384 384 HOH HOH A . G 5 HOH 50 385 385 HOH HOH A . G 5 HOH 51 386 386 HOH HOH A . G 5 HOH 52 387 387 HOH HOH A . G 5 HOH 53 388 388 HOH HOH A . G 5 HOH 54 389 389 HOH HOH A . G 5 HOH 55 411 411 HOH HOH A . G 5 HOH 56 416 416 HOH HOH A . G 5 HOH 57 417 417 HOH HOH A . G 5 HOH 58 418 418 HOH HOH A . G 5 HOH 59 419 419 HOH HOH A . G 5 HOH 60 420 420 HOH HOH A . G 5 HOH 61 421 421 HOH HOH A . G 5 HOH 62 422 422 HOH HOH A . G 5 HOH 63 424 424 HOH HOH A . G 5 HOH 64 426 426 HOH HOH A . G 5 HOH 65 427 427 HOH HOH A . G 5 HOH 66 428 428 HOH HOH A . G 5 HOH 67 430 430 HOH HOH A . G 5 HOH 68 433 433 HOH HOH A . G 5 HOH 69 434 434 HOH HOH A . G 5 HOH 70 437 437 HOH HOH A . G 5 HOH 71 439 439 HOH HOH A . G 5 HOH 72 440 440 HOH HOH A . G 5 HOH 73 442 442 HOH HOH A . G 5 HOH 74 443 443 HOH HOH A . G 5 HOH 75 444 444 HOH HOH A . G 5 HOH 76 446 446 HOH HOH A . G 5 HOH 77 449 449 HOH HOH A . G 5 HOH 78 450 450 HOH HOH A . G 5 HOH 79 456 456 HOH HOH A . G 5 HOH 80 461 461 HOH HOH A . G 5 HOH 81 462 462 HOH HOH A . G 5 HOH 82 465 465 HOH HOH A . G 5 HOH 83 466 466 HOH HOH A . G 5 HOH 84 470 470 HOH HOH A . G 5 HOH 85 472 472 HOH HOH A . G 5 HOH 86 473 473 HOH HOH A . G 5 HOH 87 474 474 HOH HOH A . G 5 HOH 88 478 478 HOH HOH A . G 5 HOH 89 479 479 HOH HOH A . G 5 HOH 90 480 480 HOH HOH A . G 5 HOH 91 481 481 HOH HOH A . G 5 HOH 92 482 482 HOH HOH A . G 5 HOH 93 483 483 HOH HOH A . G 5 HOH 94 484 484 HOH HOH A . G 5 HOH 95 485 485 HOH HOH A . G 5 HOH 96 486 486 HOH HOH A . G 5 HOH 97 487 487 HOH HOH A . G 5 HOH 98 488 488 HOH HOH A . G 5 HOH 99 495 495 HOH HOH A . G 5 HOH 100 496 496 HOH HOH A . G 5 HOH 101 497 497 HOH HOH A . G 5 HOH 102 498 498 HOH HOH A . G 5 HOH 103 499 499 HOH HOH A . G 5 HOH 104 500 500 HOH HOH A . G 5 HOH 105 501 501 HOH HOH A . G 5 HOH 106 512 512 HOH HOH A . G 5 HOH 107 513 513 HOH HOH A . G 5 HOH 108 515 515 HOH HOH A . G 5 HOH 109 519 519 HOH HOH A . G 5 HOH 110 520 520 HOH HOH A . G 5 HOH 111 521 521 HOH HOH A . G 5 HOH 112 522 522 HOH HOH A . G 5 HOH 113 523 523 HOH HOH A . G 5 HOH 114 524 524 HOH HOH A . G 5 HOH 115 525 525 HOH HOH A . G 5 HOH 116 526 526 HOH HOH A . G 5 HOH 117 527 527 HOH HOH A . G 5 HOH 118 528 528 HOH HOH A . G 5 HOH 119 529 529 HOH HOH A . G 5 HOH 120 530 530 HOH HOH A . G 5 HOH 121 531 531 HOH HOH A . G 5 HOH 122 532 532 HOH HOH A . G 5 HOH 123 533 533 HOH HOH A . G 5 HOH 124 534 534 HOH HOH A . G 5 HOH 125 535 535 HOH HOH A . G 5 HOH 126 536 536 HOH HOH A . G 5 HOH 127 538 538 HOH HOH A . H 5 HOH 1 306 306 HOH HOH B . H 5 HOH 2 310 310 HOH HOH B . H 5 HOH 3 312 312 HOH HOH B . H 5 HOH 4 315 315 HOH HOH B . H 5 HOH 5 318 318 HOH HOH B . H 5 HOH 6 321 321 HOH HOH B . H 5 HOH 7 322 322 HOH HOH B . H 5 HOH 8 323 323 HOH HOH B . H 5 HOH 9 328 328 HOH HOH B . H 5 HOH 10 329 329 HOH HOH B . H 5 HOH 11 331 331 HOH HOH B . H 5 HOH 12 332 332 HOH HOH B . H 5 HOH 13 337 337 HOH HOH B . H 5 HOH 14 339 339 HOH HOH B . H 5 HOH 15 341 341 HOH HOH B . H 5 HOH 16 343 343 HOH HOH B . H 5 HOH 17 345 345 HOH HOH B . H 5 HOH 18 349 349 HOH HOH B . H 5 HOH 19 350 350 HOH HOH B . H 5 HOH 20 353 353 HOH HOH B . H 5 HOH 21 354 354 HOH HOH B . H 5 HOH 22 355 355 HOH HOH B . H 5 HOH 23 359 359 HOH HOH B . H 5 HOH 24 360 360 HOH HOH B . H 5 HOH 25 361 361 HOH HOH B . H 5 HOH 26 362 362 HOH HOH B . H 5 HOH 27 366 366 HOH HOH B . H 5 HOH 28 375 375 HOH HOH B . H 5 HOH 29 376 376 HOH HOH B . H 5 HOH 30 377 377 HOH HOH B . H 5 HOH 31 378 378 HOH HOH B . H 5 HOH 32 390 390 HOH HOH B . H 5 HOH 33 391 391 HOH HOH B . H 5 HOH 34 392 392 HOH HOH B . H 5 HOH 35 393 393 HOH HOH B . H 5 HOH 36 394 394 HOH HOH B . H 5 HOH 37 395 395 HOH HOH B . H 5 HOH 38 396 396 HOH HOH B . H 5 HOH 39 397 397 HOH HOH B . H 5 HOH 40 398 398 HOH HOH B . H 5 HOH 41 399 399 HOH HOH B . H 5 HOH 42 400 400 HOH HOH B . H 5 HOH 43 401 401 HOH HOH B . H 5 HOH 44 402 402 HOH HOH B . H 5 HOH 45 403 403 HOH HOH B . H 5 HOH 46 404 404 HOH HOH B . H 5 HOH 47 405 405 HOH HOH B . H 5 HOH 48 406 406 HOH HOH B . H 5 HOH 49 407 407 HOH HOH B . H 5 HOH 50 408 408 HOH HOH B . H 5 HOH 51 409 409 HOH HOH B . H 5 HOH 52 410 410 HOH HOH B . H 5 HOH 53 412 412 HOH HOH B . H 5 HOH 54 413 413 HOH HOH B . H 5 HOH 55 414 414 HOH HOH B . H 5 HOH 56 415 415 HOH HOH B . H 5 HOH 57 423 423 HOH HOH B . H 5 HOH 58 425 425 HOH HOH B . H 5 HOH 59 429 429 HOH HOH B . H 5 HOH 60 431 431 HOH HOH B . H 5 HOH 61 432 432 HOH HOH B . H 5 HOH 62 435 435 HOH HOH B . H 5 HOH 63 436 436 HOH HOH B . H 5 HOH 64 438 438 HOH HOH B . H 5 HOH 65 441 441 HOH HOH B . H 5 HOH 66 445 445 HOH HOH B . H 5 HOH 67 447 447 HOH HOH B . H 5 HOH 68 448 448 HOH HOH B . H 5 HOH 69 451 451 HOH HOH B . H 5 HOH 70 452 452 HOH HOH B . H 5 HOH 71 453 453 HOH HOH B . H 5 HOH 72 454 454 HOH HOH B . H 5 HOH 73 455 455 HOH HOH B . H 5 HOH 74 457 457 HOH HOH B . H 5 HOH 75 458 458 HOH HOH B . H 5 HOH 76 459 459 HOH HOH B . H 5 HOH 77 460 460 HOH HOH B . H 5 HOH 78 463 463 HOH HOH B . H 5 HOH 79 464 464 HOH HOH B . H 5 HOH 80 467 467 HOH HOH B . H 5 HOH 81 468 468 HOH HOH B . H 5 HOH 82 469 469 HOH HOH B . H 5 HOH 83 471 471 HOH HOH B . H 5 HOH 84 475 475 HOH HOH B . H 5 HOH 85 476 476 HOH HOH B . H 5 HOH 86 477 477 HOH HOH B . H 5 HOH 87 489 489 HOH HOH B . H 5 HOH 88 490 490 HOH HOH B . H 5 HOH 89 491 491 HOH HOH B . H 5 HOH 90 492 492 HOH HOH B . H 5 HOH 91 493 493 HOH HOH B . H 5 HOH 92 494 494 HOH HOH B . H 5 HOH 93 502 502 HOH HOH B . H 5 HOH 94 503 503 HOH HOH B . H 5 HOH 95 504 504 HOH HOH B . H 5 HOH 96 505 505 HOH HOH B . H 5 HOH 97 506 506 HOH HOH B . H 5 HOH 98 507 507 HOH HOH B . H 5 HOH 99 508 508 HOH HOH B . H 5 HOH 100 509 509 HOH HOH B . H 5 HOH 101 510 510 HOH HOH B . H 5 HOH 102 511 511 HOH HOH B . H 5 HOH 103 514 514 HOH HOH B . H 5 HOH 104 516 516 HOH HOH B . H 5 HOH 105 517 517 HOH HOH B . H 5 HOH 106 518 518 HOH HOH B . H 5 HOH 107 537 537 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A KCX 205 A KCX 205 ? LYS 'LYSINE NZ-CARBOXYLIC ACID' 2 B KCX 205 B KCX 205 ? LYS 'LYSINE NZ-CARBOXYLIC ACID' # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,C,D,G 2 1 B,E,F,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-07 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 MLPHARE phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE THE DIFFERENCES BETWEEN THE SEQUENCES IN THE PDB ENTRY 1PU6 AND IN THE DATABASE REFERENCE ARE DUE TO THE PARTICULAR H.PYLORI STRAIN. DATABASE REFERENCE REFERS TO H.PYLORI STRAIN J99; MAGIII WAS CLONED FROM H.PYLORI STRAIN 13/5 (SEE REFERENCE 1) ; # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 150 ? ? CG A ASP 150 ? ? OD2 A ASP 150 ? ? 123.84 118.30 5.54 0.90 N 2 1 CB A LEU 170 ? ? CG A LEU 170 ? ? CD2 A LEU 170 ? ? 124.91 111.00 13.91 1.70 N 3 1 CB B ASP 64 ? ? CG B ASP 64 ? ? OD2 B ASP 64 ? ? 124.06 118.30 5.76 0.90 N 4 1 CB B LEU 170 ? ? CG B LEU 170 ? ? CD2 B LEU 170 ? ? 121.76 111.00 10.76 1.70 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 TRP A 24 ? ? 70.24 -55.66 2 1 GLU A 62 ? ? -132.48 -148.70 3 1 GLN A 109 ? ? 76.94 -36.43 4 1 ASP A 150 ? ? -171.84 -179.57 5 1 TRP B 24 ? ? 68.26 -54.71 6 1 GLU B 62 ? ? -127.14 -154.07 7 1 GLN B 109 ? ? 77.50 -32.10 8 1 ASP B 150 ? ? -170.16 -178.07 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 18 ? CG ? A LYS 18 CG 2 1 Y 1 A LYS 18 ? CD ? A LYS 18 CD 3 1 Y 1 A LYS 18 ? CE ? A LYS 18 CE 4 1 Y 1 A LYS 18 ? NZ ? A LYS 18 NZ 5 1 Y 1 A LYS 30 ? CE ? A LYS 30 CE 6 1 Y 1 A LYS 30 ? NZ ? A LYS 30 NZ 7 1 Y 1 A LYS 44 ? CD ? A LYS 44 CD 8 1 Y 1 A LYS 44 ? CE ? A LYS 44 CE 9 1 Y 1 A LYS 44 ? NZ ? A LYS 44 NZ 10 1 Y 1 A LYS 50 ? CD ? A LYS 50 CD 11 1 Y 1 A LYS 50 ? CE ? A LYS 50 CE 12 1 Y 1 A LYS 50 ? NZ ? A LYS 50 NZ 13 1 Y 1 A LYS 71 ? NZ ? A LYS 71 NZ 14 1 Y 1 A GLU 76 ? CD ? A GLU 76 CD 15 1 Y 1 A GLU 76 ? OE1 ? A GLU 76 OE1 16 1 Y 1 A GLU 76 ? OE2 ? A GLU 76 OE2 17 1 Y 1 A GLU 82 ? CG ? A GLU 82 CG 18 1 Y 1 A GLU 82 ? CD ? A GLU 82 CD 19 1 Y 1 A GLU 82 ? OE1 ? A GLU 82 OE1 20 1 Y 1 A GLU 82 ? OE2 ? A GLU 82 OE2 21 1 Y 1 A LYS 151 ? CD ? A LYS 151 CD 22 1 Y 1 A LYS 151 ? CE ? A LYS 151 CE 23 1 Y 1 A LYS 151 ? NZ ? A LYS 151 NZ 24 1 Y 1 A LYS 159 ? CD ? A LYS 159 CD 25 1 Y 1 A LYS 159 ? CE ? A LYS 159 CE 26 1 Y 1 A LYS 159 ? NZ ? A LYS 159 NZ 27 1 Y 1 A GLU 163 ? CD ? A GLU 163 CD 28 1 Y 1 A GLU 163 ? OE1 ? A GLU 163 OE1 29 1 Y 1 A GLU 163 ? OE2 ? A GLU 163 OE2 30 1 Y 1 A GLU 215 ? CD ? A GLU 215 CD 31 1 Y 1 A GLU 215 ? OE1 ? A GLU 215 OE1 32 1 Y 1 A GLU 215 ? OE2 ? A GLU 215 OE2 33 1 Y 1 A LYS 217 ? CG ? A LYS 217 CG 34 1 Y 1 A LYS 217 ? CD ? A LYS 217 CD 35 1 Y 1 A LYS 217 ? CE ? A LYS 217 CE 36 1 Y 1 A LYS 217 ? NZ ? A LYS 217 NZ 37 1 Y 1 A LEU 218 ? C ? A LEU 218 C 38 1 Y 1 A LEU 218 ? O ? A LEU 218 O 39 1 Y 1 A LEU 218 ? CB ? A LEU 218 CB 40 1 Y 1 A LEU 218 ? CG ? A LEU 218 CG 41 1 Y 1 A LEU 218 ? CD1 ? A LEU 218 CD1 42 1 Y 1 A LEU 218 ? CD2 ? A LEU 218 CD2 43 1 Y 1 B GLU 32 ? CD ? B GLU 32 CD 44 1 Y 1 B LYS 44 ? CG ? B LYS 44 CG 45 1 Y 1 B LYS 44 ? CD ? B LYS 44 CD 46 1 Y 1 B LYS 44 ? CE ? B LYS 44 CE 47 1 Y 1 B LYS 44 ? NZ ? B LYS 44 NZ 48 1 Y 1 B LYS 50 ? CD ? B LYS 50 CD 49 1 Y 1 B LYS 50 ? CE ? B LYS 50 CE 50 1 Y 1 B LYS 50 ? NZ ? B LYS 50 NZ 51 1 Y 1 B GLU 62 ? CG ? B GLU 62 CG 52 1 Y 1 B GLU 62 ? CD ? B GLU 62 CD 53 1 Y 1 B GLU 62 ? OE1 ? B GLU 62 OE1 54 1 Y 1 B GLU 62 ? OE2 ? B GLU 62 OE2 55 1 Y 1 B GLU 76 ? OE1 ? B GLU 76 OE1 56 1 Y 1 B GLU 76 ? OE2 ? B GLU 76 OE2 57 1 Y 1 B LYS 106 ? NZ ? B LYS 106 NZ 58 1 Y 1 B GLU 163 ? CD ? B GLU 163 CD 59 1 Y 1 B GLU 163 ? OE1 ? B GLU 163 OE1 60 1 Y 1 B GLU 163 ? OE2 ? B GLU 163 OE2 61 1 Y 1 B GLU 165 ? CG ? B GLU 165 CG 62 1 Y 1 B GLU 165 ? CD ? B GLU 165 CD 63 1 Y 1 B GLU 165 ? OE1 ? B GLU 165 OE1 64 1 Y 1 B GLU 165 ? OE2 ? B GLU 165 OE2 65 1 Y 1 B LEU 214 ? CG ? B LEU 214 CG 66 1 Y 1 B LEU 214 ? CD1 ? B LEU 214 CD1 67 1 Y 1 B LEU 214 ? CD2 ? B LEU 214 CD2 68 1 Y 1 B GLU 215 ? CD ? B GLU 215 CD 69 1 Y 1 B GLU 215 ? OE1 ? B GLU 215 OE1 70 1 Y 1 B GLU 215 ? OE2 ? B GLU 215 OE2 71 1 Y 1 B LYS 217 ? CD ? B LYS 217 CD 72 1 Y 1 B LYS 217 ? CE ? B LYS 217 CE 73 1 Y 1 B LYS 217 ? NZ ? B LYS 217 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 1 ? A VAL 1 2 1 Y 1 B VAL 1 ? B VAL 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'CHLORIDE ION' CL 3 BETA-MERCAPTOETHANOL BME 4 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 5 water HOH #