data_1PUB # _entry.id 1PUB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PUB pdb_00001pub 10.2210/pdb1pub/pdb RCSB RCSB019573 ? ? WWPDB D_1000019573 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1G13 'apo structure, different crystal form' unspecified PDB 1PU5 'co-crystal with GM2 bound' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PUB _pdbx_database_status.recvd_initial_deposition_date 2003-06-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Wright, C.S.' 1 'Zhao, Q.' 2 'Rastinejad, F.' 3 # _citation.id primary _citation.title 'Structural analysis of lipid complexes of GM2-activator protein.' _citation.journal_abbrev J.Mol.Biol. _citation.journal_volume 331 _citation.page_first 951 _citation.page_last 964 _citation.year 2003 _citation.journal_id_ASTM JMOBAK _citation.country UK _citation.journal_id_ISSN 0022-2836 _citation.journal_id_CSD 0070 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12909021 _citation.pdbx_database_id_DOI '10.1016/S0022-2836(03)00794-0' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Wright, C.S.' 1 ? primary 'Zhao, Q.' 2 ? primary 'Rastinejad, F.' 3 ? # _cell.entry_id 1PUB _cell.length_a 40.070 _cell.length_b 42.420 _cell.length_c 113.780 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1PUB _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GM2-activator protein' 17604.303 1 ? ? ? ? 2 non-polymer syn 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 704.998 1 ? ? ? ? 3 water nat water 18.015 61 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;SSFSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHF CDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLK GI ; _entity_poly.pdbx_seq_one_letter_code_can ;SSFSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHF CDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLK GI ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 SER n 1 3 PHE n 1 4 SER n 1 5 TRP n 1 6 ASP n 1 7 ASN n 1 8 CYS n 1 9 ASP n 1 10 GLU n 1 11 GLY n 1 12 LYS n 1 13 ASP n 1 14 PRO n 1 15 ALA n 1 16 VAL n 1 17 ILE n 1 18 ARG n 1 19 SER n 1 20 LEU n 1 21 THR n 1 22 LEU n 1 23 GLU n 1 24 PRO n 1 25 ASP n 1 26 PRO n 1 27 ILE n 1 28 ILE n 1 29 VAL n 1 30 PRO n 1 31 GLY n 1 32 ASN n 1 33 VAL n 1 34 THR n 1 35 LEU n 1 36 SER n 1 37 VAL n 1 38 MET n 1 39 GLY n 1 40 SER n 1 41 THR n 1 42 SER n 1 43 VAL n 1 44 PRO n 1 45 LEU n 1 46 SER n 1 47 SER n 1 48 PRO n 1 49 LEU n 1 50 LYS n 1 51 VAL n 1 52 ASP n 1 53 LEU n 1 54 VAL n 1 55 LEU n 1 56 GLU n 1 57 LYS n 1 58 GLU n 1 59 VAL n 1 60 ALA n 1 61 GLY n 1 62 LEU n 1 63 TRP n 1 64 ILE n 1 65 LYS n 1 66 ILE n 1 67 PRO n 1 68 CYS n 1 69 THR n 1 70 ASP n 1 71 TYR n 1 72 ILE n 1 73 GLY n 1 74 SER n 1 75 CYS n 1 76 THR n 1 77 PHE n 1 78 GLU n 1 79 HIS n 1 80 PHE n 1 81 CYS n 1 82 ASP n 1 83 VAL n 1 84 LEU n 1 85 ASP n 1 86 MET n 1 87 LEU n 1 88 ILE n 1 89 PRO n 1 90 THR n 1 91 GLY n 1 92 GLU n 1 93 PRO n 1 94 CYS n 1 95 PRO n 1 96 GLU n 1 97 PRO n 1 98 LEU n 1 99 ARG n 1 100 THR n 1 101 TYR n 1 102 GLY n 1 103 LEU n 1 104 PRO n 1 105 CYS n 1 106 HIS n 1 107 CYS n 1 108 PRO n 1 109 PHE n 1 110 LYS n 1 111 GLU n 1 112 GLY n 1 113 THR n 1 114 TYR n 1 115 SER n 1 116 LEU n 1 117 PRO n 1 118 LYS n 1 119 SER n 1 120 GLU n 1 121 PHE n 1 122 VAL n 1 123 VAL n 1 124 PRO n 1 125 ASP n 1 126 LEU n 1 127 GLU n 1 128 LEU n 1 129 PRO n 1 130 SER n 1 131 TRP n 1 132 LEU n 1 133 THR n 1 134 THR n 1 135 GLY n 1 136 ASN n 1 137 TYR n 1 138 ARG n 1 139 ILE n 1 140 GLU n 1 141 SER n 1 142 VAL n 1 143 LEU n 1 144 SER n 1 145 SER n 1 146 SER n 1 147 GLY n 1 148 LYS n 1 149 ARG n 1 150 LEU n 1 151 GLY n 1 152 CYS n 1 153 ILE n 1 154 LYS n 1 155 ILE n 1 156 ALA n 1 157 ALA n 1 158 SER n 1 159 LEU n 1 160 LYS n 1 161 GLY n 1 162 ILE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pT513 _entity_src_gen.plasmid_details 'derivative of pT7-7' _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SAP3_HUMAN _struct_ref.pdbx_db_accession P17900 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SSFSWDNCDEGKDPAVIRSLTLEPDPIIVPGNVTLSVMGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHF CDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSSSGKRLGCIKIAASLK GI ; _struct_ref.pdbx_align_begin 39 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1PUB _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 162 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P17900 _struct_ref_seq.db_align_beg 39 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 200 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 162 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PH non-polymer . 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 'PHOSPHATIDIC ACID' 'C39 H77 O8 P' 704.998 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1PUB _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.17 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.pdbx_details '21% Peg 4000, 0.1M acetate buffer, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS' _diffrn_detector.pdbx_collection_date 1995-02-20 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54041 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54041 # _reflns.entry_id 1PUB _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F 1.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 2.5 _reflns.number_obs 7091 _reflns.number_all 7099 _reflns.percent_possible_obs 98.6 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_Rsym_value 0.128 _reflns.pdbx_netI_over_sigmaI 3.5 _reflns.B_iso_Wilson_estimate 56.4 _reflns.pdbx_redundancy 3.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.5 _reflns_shell.d_res_low 2.59 _reflns_shell.percent_possible_all 98.7 _reflns_shell.Rmerge_I_obs 0.751 _reflns_shell.pdbx_Rsym_value 0.75 _reflns_shell.meanI_over_sigI_obs 1.3 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 680 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PUB _refine.ls_number_reflns_obs 6640 _refine.ls_number_reflns_all 6897 _refine.pdbx_ls_sigma_I 1.0 _refine.pdbx_ls_sigma_F 1.0 _refine.pdbx_data_cutoff_high_absF 968320.30 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 968320.30 _refine.ls_d_res_low 7.99 _refine.ls_d_res_high 2.51 _refine.ls_percent_reflns_obs 98.1 _refine.ls_R_factor_obs 0.209 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.209 _refine.ls_R_factor_R_free 0.286 _refine.ls_R_factor_R_free_error 0.011 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.9 _refine.ls_number_reflns_R_free 727 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 50.4 _refine.aniso_B[1][1] 7.18 _refine.aniso_B[2][2] -6.86 _refine.aniso_B[3][3] -0.32 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.390013 _refine.solvent_model_param_bsol 102.349 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'monomer A of pdb entry 1G13' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PUB _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.50 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.60 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1232 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 1341 _refine_hist.d_res_high 2.51 _refine_hist.d_res_low 7.99 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.02 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 3.91 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 5.81 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 10.98 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 10.35 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.51 _refine_ls_shell.d_res_low 2.65 _refine_ls_shell.number_reflns_R_work 849 _refine_ls_shell.R_factor_R_work 0.356 _refine_ls_shell.percent_reflns_obs 84.3 _refine_ls_shell.R_factor_R_free 0.403 _refine_ls_shell.R_factor_R_free_error 0.040 _refine_ls_shell.percent_reflns_R_free 10.7 _refine_ls_shell.number_reflns_R_free 102 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 PA_XPLOR.PARAM PA_XPLOR.TOP 'X-RAY DIFFRACTION' 3 SOLVENT_REP.PARAM SOLVENT.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1PUB _struct.title 'GM2-activator Protein crystal structure' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PUB _struct_keywords.pdbx_keywords 'LIPID BINDING PROTEIN' _struct_keywords.text 'beta-cup, enlarge lipid binding pocket, LIPID BINDING PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 9 ? LYS A 12 ? ASP A 9 LYS A 12 5 ? 4 HELX_P HELX_P2 2 HIS A 79 ? ILE A 88 ? HIS A 79 ILE A 88 1 ? 10 HELX_P HELX_P3 3 PRO A 129 ? THR A 134 ? PRO A 129 THR A 134 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 8 SG ? ? ? 1_555 A CYS 152 SG ? ? A CYS 8 A CYS 152 1_555 ? ? ? ? ? ? ? 2.003 ? ? disulf2 disulf ? ? A CYS 68 SG ? ? ? 1_555 A CYS 75 SG ? ? A CYS 68 A CYS 75 1_555 ? ? ? ? ? ? ? 2.024 ? ? disulf3 disulf ? ? A CYS 81 SG ? ? ? 1_555 A CYS 107 SG ? ? A CYS 81 A CYS 107 1_555 ? ? ? ? ? ? ? 2.023 ? ? disulf4 disulf ? ? A CYS 94 SG ? ? ? 1_555 A CYS 105 SG ? ? A CYS 94 A CYS 105 1_555 ? ? ? ? ? ? ? 2.034 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 GLU 23 A . ? GLU 23 A PRO 24 A ? PRO 24 A 1 -0.06 2 ASP 25 A . ? ASP 25 A PRO 26 A ? PRO 26 A 1 0.03 3 VAL 29 A . ? VAL 29 A PRO 30 A ? PRO 30 A 1 0.05 4 SER 47 A . ? SER 47 A PRO 48 A ? PRO 48 A 1 0.45 5 GLU 96 A . ? GLU 96 A PRO 97 A ? PRO 97 A 1 0.11 6 CYS 107 A . ? CYS 107 A PRO 108 A ? PRO 108 A 1 0.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 4 ? ASN A 7 ? SER A 4 ASN A 7 A 2 LYS A 148 ? GLY A 161 ? LYS A 148 GLY A 161 A 3 GLY A 135 ? SER A 145 ? GLY A 135 SER A 145 A 4 LYS A 50 ? VAL A 59 ? LYS A 50 VAL A 59 A 5 LEU A 62 ? LYS A 65 ? LEU A 62 LYS A 65 B 1 ILE A 27 ? VAL A 29 ? ILE A 27 VAL A 29 B 2 LYS A 148 ? GLY A 161 ? LYS A 148 GLY A 161 B 3 GLY A 135 ? SER A 145 ? GLY A 135 SER A 145 B 4 LYS A 50 ? VAL A 59 ? LYS A 50 VAL A 59 B 5 THR A 76 ? PHE A 77 ? THR A 76 PHE A 77 C 1 ALA A 15 ? GLU A 23 ? ALA A 15 GLU A 23 C 2 GLY A 31 ? THR A 41 ? GLY A 31 THR A 41 C 3 GLY A 112 ? VAL A 123 ? GLY A 112 VAL A 123 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER A 4 ? N SER A 4 O ALA A 156 ? O ALA A 156 A 2 3 O ILE A 155 ? O ILE A 155 N ILE A 139 ? N ILE A 139 A 3 4 O ARG A 138 ? O ARG A 138 N GLU A 56 ? N GLU A 56 A 4 5 N LYS A 57 ? N LYS A 57 O ILE A 64 ? O ILE A 64 B 1 2 N ILE A 27 ? N ILE A 27 O SER A 158 ? O SER A 158 B 2 3 O ILE A 155 ? O ILE A 155 N ILE A 139 ? N ILE A 139 B 3 4 O ARG A 138 ? O ARG A 138 N GLU A 56 ? N GLU A 56 B 4 5 N VAL A 51 ? N VAL A 51 O PHE A 77 ? O PHE A 77 C 1 2 N SER A 19 ? N SER A 19 O MET A 38 ? O MET A 38 C 2 3 N GLY A 31 ? N GLY A 31 O VAL A 123 ? O VAL A 123 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 3PH _struct_site.pdbx_auth_seq_id 2341 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE 3PH A 2341' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 ILE A 27 ? ILE A 27 . ? 1_555 ? 2 AC1 7 VAL A 37 ? VAL A 37 . ? 1_555 ? 3 AC1 7 SER A 141 ? SER A 141 . ? 1_555 ? 4 AC1 7 ILE A 153 ? ILE A 153 . ? 1_555 ? 5 AC1 7 ILE A 155 ? ILE A 155 . ? 1_555 ? 6 AC1 7 LEU A 159 ? LEU A 159 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 2368 . ? 1_555 ? # _database_PDB_matrix.entry_id 1PUB _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1PUB _atom_sites.fract_transf_matrix[1][1] 0.024956 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023574 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008789 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 1 1 SER SER A . n A 1 2 SER 2 2 2 SER SER A . n A 1 3 PHE 3 3 3 PHE PHE A . n A 1 4 SER 4 4 4 SER SER A . n A 1 5 TRP 5 5 5 TRP TRP A . n A 1 6 ASP 6 6 6 ASP ASP A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 CYS 8 8 8 CYS CYS A . n A 1 9 ASP 9 9 9 ASP ASP A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 VAL 16 16 16 VAL VAL A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 ARG 18 18 18 ARG ARG A . n A 1 19 SER 19 19 19 SER SER A . n A 1 20 LEU 20 20 20 LEU LEU A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 GLU 23 23 23 GLU GLU A . n A 1 24 PRO 24 24 24 PRO PRO A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 PRO 26 26 26 PRO PRO A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 GLY 31 31 31 GLY GLY A . n A 1 32 ASN 32 32 32 ASN ASN A . n A 1 33 VAL 33 33 33 VAL VAL A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 LEU 35 35 35 LEU LEU A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 MET 38 38 38 MET MET A . n A 1 39 GLY 39 39 39 GLY GLY A . n A 1 40 SER 40 40 40 SER SER A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 VAL 43 43 43 VAL VAL A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 SER 47 47 47 SER SER A . n A 1 48 PRO 48 48 48 PRO PRO A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 LYS 50 50 50 LYS LYS A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 LYS 57 57 57 LYS LYS A . n A 1 58 GLU 58 58 58 GLU GLU A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ALA 60 60 60 ALA ALA A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 TRP 63 63 63 TRP TRP A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 PRO 67 67 67 PRO PRO A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 THR 69 69 69 THR THR A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 SER 74 74 74 SER SER A . n A 1 75 CYS 75 75 75 CYS CYS A . n A 1 76 THR 76 76 76 THR THR A . n A 1 77 PHE 77 77 77 PHE PHE A . n A 1 78 GLU 78 78 78 GLU GLU A . n A 1 79 HIS 79 79 79 HIS HIS A . n A 1 80 PHE 80 80 80 PHE PHE A . n A 1 81 CYS 81 81 81 CYS CYS A . n A 1 82 ASP 82 82 82 ASP ASP A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 LEU 84 84 84 LEU LEU A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 MET 86 86 86 MET MET A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 PRO 89 89 89 PRO PRO A . n A 1 90 THR 90 90 90 THR THR A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 GLU 92 92 92 GLU GLU A . n A 1 93 PRO 93 93 93 PRO PRO A . n A 1 94 CYS 94 94 94 CYS CYS A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 PRO 97 97 97 PRO PRO A . n A 1 98 LEU 98 98 98 LEU LEU A . n A 1 99 ARG 99 99 99 ARG ARG A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 TYR 101 101 101 TYR TYR A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PRO 104 104 104 PRO PRO A . n A 1 105 CYS 105 105 105 CYS CYS A . n A 1 106 HIS 106 106 106 HIS HIS A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 PHE 109 109 109 PHE PHE A . n A 1 110 LYS 110 110 110 LYS LYS A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 GLY 112 112 112 GLY GLY A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 SER 115 115 115 SER SER A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 PRO 117 117 117 PRO PRO A . n A 1 118 LYS 118 118 118 LYS LYS A . n A 1 119 SER 119 119 119 SER SER A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 VAL 122 122 122 VAL VAL A . n A 1 123 VAL 123 123 123 VAL VAL A . n A 1 124 PRO 124 124 124 PRO PRO A . n A 1 125 ASP 125 125 125 ASP ASP A . n A 1 126 LEU 126 126 126 LEU LEU A . n A 1 127 GLU 127 127 127 GLU GLU A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PRO 129 129 129 PRO PRO A . n A 1 130 SER 130 130 130 SER SER A . n A 1 131 TRP 131 131 131 TRP TRP A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 THR 133 133 133 THR THR A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 GLY 135 135 135 GLY GLY A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 TYR 137 137 137 TYR TYR A . n A 1 138 ARG 138 138 138 ARG ARG A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 GLU 140 140 140 GLU GLU A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 VAL 142 142 142 VAL VAL A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 SER 144 144 144 SER SER A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 LYS 148 148 148 LYS LYS A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 GLY 151 151 151 GLY GLY A . n A 1 152 CYS 152 152 152 CYS CYS A . n A 1 153 ILE 153 153 153 ILE ILE A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 ILE 155 155 155 ILE ILE A . n A 1 156 ALA 156 156 156 ALA ALA A . n A 1 157 ALA 157 157 157 ALA ALA A . n A 1 158 SER 158 158 158 SER SER A . n A 1 159 LEU 159 159 159 LEU LEU A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 GLY 161 161 161 GLY GLY A . n A 1 162 ILE 162 162 162 ILE ILE A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 3PH 1 2341 2341 3PH PA A . C 3 HOH 1 2342 1 HOH TIP A . C 3 HOH 2 2343 2 HOH TIP A . C 3 HOH 3 2344 3 HOH TIP A . C 3 HOH 4 2345 4 HOH TIP A . C 3 HOH 5 2346 5 HOH TIP A . C 3 HOH 6 2347 6 HOH TIP A . C 3 HOH 7 2348 7 HOH TIP A . C 3 HOH 8 2349 8 HOH TIP A . C 3 HOH 9 2350 9 HOH TIP A . C 3 HOH 10 2351 10 HOH TIP A . C 3 HOH 11 2352 11 HOH TIP A . C 3 HOH 12 2353 12 HOH TIP A . C 3 HOH 13 2354 13 HOH TIP A . C 3 HOH 14 2355 14 HOH TIP A . C 3 HOH 15 2356 15 HOH TIP A . C 3 HOH 16 2357 16 HOH TIP A . C 3 HOH 17 2358 17 HOH TIP A . C 3 HOH 18 2359 18 HOH TIP A . C 3 HOH 19 2360 19 HOH TIP A . C 3 HOH 20 2361 20 HOH TIP A . C 3 HOH 21 2362 21 HOH TIP A . C 3 HOH 22 2363 22 HOH TIP A . C 3 HOH 23 2364 23 HOH TIP A . C 3 HOH 24 2365 24 HOH TIP A . C 3 HOH 25 2366 25 HOH TIP A . C 3 HOH 26 2367 26 HOH TIP A . C 3 HOH 27 2368 27 HOH TIP A . C 3 HOH 28 2369 28 HOH TIP A . C 3 HOH 29 2370 29 HOH TIP A . C 3 HOH 30 2371 30 HOH TIP A . C 3 HOH 31 2372 31 HOH TIP A . C 3 HOH 32 2373 32 HOH TIP A . C 3 HOH 33 2374 33 HOH TIP A . C 3 HOH 34 2375 34 HOH TIP A . C 3 HOH 35 2376 35 HOH TIP A . C 3 HOH 36 2377 36 HOH TIP A . C 3 HOH 37 2378 37 HOH TIP A . C 3 HOH 38 2379 38 HOH TIP A . C 3 HOH 39 2380 39 HOH TIP A . C 3 HOH 40 2381 40 HOH TIP A . C 3 HOH 41 2382 41 HOH TIP A . C 3 HOH 42 2383 42 HOH TIP A . C 3 HOH 43 2384 43 HOH TIP A . C 3 HOH 44 2385 44 HOH TIP A . C 3 HOH 45 2386 45 HOH TIP A . C 3 HOH 46 2387 46 HOH TIP A . C 3 HOH 47 2388 47 HOH TIP A . C 3 HOH 48 2389 48 HOH TIP A . C 3 HOH 49 2390 49 HOH TIP A . C 3 HOH 50 2391 50 HOH TIP A . C 3 HOH 51 2392 51 HOH TIP A . C 3 HOH 52 2393 52 HOH TIP A . C 3 HOH 53 2394 53 HOH TIP A . C 3 HOH 54 2395 54 HOH TIP A . C 3 HOH 55 2396 55 HOH TIP A . C 3 HOH 56 2397 56 HOH TIP A . C 3 HOH 57 2398 57 HOH TIP A . C 3 HOH 58 2399 58 HOH TIP A . C 3 HOH 59 2400 59 HOH TIP A . C 3 HOH 60 2401 60 HOH TIP A . C 3 HOH 61 2402 61 HOH TIP A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-06-29 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2349 ? ? O A HOH 2370 ? ? 0.20 2 1 O A HOH 2380 ? ? O A HOH 2385 ? ? 1.83 3 1 O A ALA 15 ? ? O A HOH 2353 ? ? 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 2 ? ? -52.25 -160.77 2 1 GLU A 10 ? ? 53.72 18.57 3 1 TYR A 71 ? ? 81.26 -17.14 4 1 SER A 74 ? ? -68.74 62.39 5 1 ASP A 85 ? ? -68.58 0.35 6 1 THR A 90 ? ? -32.79 -16.90 7 1 PRO A 95 ? ? -65.29 -165.57 8 1 PRO A 124 ? ? -37.48 161.53 9 1 ASP A 125 ? ? -99.82 42.49 10 1 LEU A 126 ? ? -39.71 -17.56 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A THR 90 ? CB ? A THR 90 CB 2 1 Y 0 A THR 90 ? OG1 ? A THR 90 OG1 3 1 Y 0 A THR 90 ? CG2 ? A THR 90 CG2 4 1 Y 0 A LYS 110 ? CD ? A LYS 110 CD 5 1 Y 0 A LYS 110 ? CE ? A LYS 110 CE 6 1 Y 0 A LYS 110 ? NZ ? A LYS 110 NZ 7 1 Y 0 A GLU 111 ? CG ? A GLU 111 CG 8 1 Y 0 A GLU 111 ? CD ? A GLU 111 CD 9 1 Y 0 A GLU 111 ? OE1 ? A GLU 111 OE1 10 1 Y 0 A GLU 111 ? OE2 ? A GLU 111 OE2 11 1 Y 0 A ASP 125 ? CG ? A ASP 125 CG 12 1 Y 0 A ASP 125 ? OD1 ? A ASP 125 OD1 13 1 Y 0 A ASP 125 ? OD2 ? A ASP 125 OD2 14 1 Y 0 A LEU 126 ? CG ? A LEU 126 CG 15 1 Y 0 A LEU 126 ? CD1 ? A LEU 126 CD1 16 1 Y 0 A LEU 126 ? CD2 ? A LEU 126 CD2 17 1 Y 0 A GLU 127 ? CB ? A GLU 127 CB 18 1 Y 0 A GLU 127 ? CG ? A GLU 127 CG 19 1 Y 0 A GLU 127 ? CD ? A GLU 127 CD 20 1 Y 0 A GLU 127 ? OE1 ? A GLU 127 OE1 21 1 Y 0 A GLU 127 ? OE2 ? A GLU 127 OE2 22 1 Y 0 A LYS 160 ? NZ ? A LYS 160 NZ 23 1 Y 0 A ILE 162 ? CB ? A ILE 162 CB 24 1 Y 0 A ILE 162 ? CG1 ? A ILE 162 CG1 25 1 Y 0 A ILE 162 ? CG2 ? A ILE 162 CG2 26 1 Y 0 A ILE 162 ? CD1 ? A ILE 162 CD1 27 1 Y 0 A ILE 162 ? OXT ? A ILE 162 OXT # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3PH O13 O N N 1 3PH P P N N 2 3PH O14 O N N 3 3PH O12 O N N 4 3PH O11 O N N 5 3PH C1 C N N 6 3PH C2 C N R 7 3PH O21 O N N 8 3PH C21 C N N 9 3PH O22 O N N 10 3PH C22 C N N 11 3PH C23 C N N 12 3PH C24 C N N 13 3PH C25 C N N 14 3PH C26 C N N 15 3PH C27 C N N 16 3PH C28 C N N 17 3PH C29 C N N 18 3PH C2A C N N 19 3PH C2B C N N 20 3PH C2C C N N 21 3PH C2D C N N 22 3PH C2E C N N 23 3PH C2F C N N 24 3PH C2G C N N 25 3PH C2H C N N 26 3PH C2I C N N 27 3PH C3 C N N 28 3PH O31 O N N 29 3PH C31 C N N 30 3PH O32 O N N 31 3PH C32 C N N 32 3PH C33 C N N 33 3PH C34 C N N 34 3PH C35 C N N 35 3PH C36 C N N 36 3PH C37 C N N 37 3PH C38 C N N 38 3PH C39 C N N 39 3PH C3A C N N 40 3PH C3B C N N 41 3PH C3C C N N 42 3PH C3D C N N 43 3PH C3E C N N 44 3PH C3F C N N 45 3PH C3G C N N 46 3PH C3H C N N 47 3PH C3I C N N 48 3PH H13 H N N 49 3PH H11 H N N 50 3PH H12 H N N 51 3PH H2 H N N 52 3PH H221 H N N 53 3PH H222 H N N 54 3PH H231 H N N 55 3PH H232 H N N 56 3PH H241 H N N 57 3PH H242 H N N 58 3PH H251 H N N 59 3PH H252 H N N 60 3PH H261 H N N 61 3PH H262 H N N 62 3PH H271 H N N 63 3PH H272 H N N 64 3PH H281 H N N 65 3PH H282 H N N 66 3PH H291 H N N 67 3PH H292 H N N 68 3PH H2A1 H N N 69 3PH H2A2 H N N 70 3PH H2B1 H N N 71 3PH H2B2 H N N 72 3PH H2C1 H N N 73 3PH H2C2 H N N 74 3PH H2D1 H N N 75 3PH H2D2 H N N 76 3PH H2E1 H N N 77 3PH H2E2 H N N 78 3PH H2F1 H N N 79 3PH H2F2 H N N 80 3PH H2G1 H N N 81 3PH H2G2 H N N 82 3PH H2H1 H N N 83 3PH H2H2 H N N 84 3PH H2I1 H N N 85 3PH H2I2 H N N 86 3PH H2I3 H N N 87 3PH H31 H N N 88 3PH H32 H N N 89 3PH H321 H N N 90 3PH H322 H N N 91 3PH H331 H N N 92 3PH H332 H N N 93 3PH H341 H N N 94 3PH H342 H N N 95 3PH H351 H N N 96 3PH H352 H N N 97 3PH H361 H N N 98 3PH H362 H N N 99 3PH H371 H N N 100 3PH H372 H N N 101 3PH H381 H N N 102 3PH H382 H N N 103 3PH H391 H N N 104 3PH H392 H N N 105 3PH H3A1 H N N 106 3PH H3A2 H N N 107 3PH H3B1 H N N 108 3PH H3B2 H N N 109 3PH H3C1 H N N 110 3PH H3C2 H N N 111 3PH H3D1 H N N 112 3PH H3D2 H N N 113 3PH H3E1 H N N 114 3PH H3E2 H N N 115 3PH H3F1 H N N 116 3PH H3F2 H N N 117 3PH H3G1 H N N 118 3PH H3G2 H N N 119 3PH H3H1 H N N 120 3PH H3H2 H N N 121 3PH H3I1 H N N 122 3PH H3I2 H N N 123 3PH H3I3 H N N 124 3PH H77 H N N 125 ALA N N N N 126 ALA CA C N S 127 ALA C C N N 128 ALA O O N N 129 ALA CB C N N 130 ALA OXT O N N 131 ALA H H N N 132 ALA H2 H N N 133 ALA HA H N N 134 ALA HB1 H N N 135 ALA HB2 H N N 136 ALA HB3 H N N 137 ALA HXT H N N 138 ARG N N N N 139 ARG CA C N S 140 ARG C C N N 141 ARG O O N N 142 ARG CB C N N 143 ARG CG C N N 144 ARG CD C N N 145 ARG NE N N N 146 ARG CZ C N N 147 ARG NH1 N N N 148 ARG NH2 N N N 149 ARG OXT O N N 150 ARG H H N N 151 ARG H2 H N N 152 ARG HA H N N 153 ARG HB2 H N N 154 ARG HB3 H N N 155 ARG HG2 H N N 156 ARG HG3 H N N 157 ARG HD2 H N N 158 ARG HD3 H N N 159 ARG HE H N N 160 ARG HH11 H N N 161 ARG HH12 H N N 162 ARG HH21 H N N 163 ARG HH22 H N N 164 ARG HXT H N N 165 ASN N N N N 166 ASN CA C N S 167 ASN C C N N 168 ASN O O N N 169 ASN CB C N N 170 ASN CG C N N 171 ASN OD1 O N N 172 ASN ND2 N N N 173 ASN OXT O N N 174 ASN H H N N 175 ASN H2 H N N 176 ASN HA H N N 177 ASN HB2 H N N 178 ASN HB3 H N N 179 ASN HD21 H N N 180 ASN HD22 H N N 181 ASN HXT H N N 182 ASP N N N N 183 ASP CA C N S 184 ASP C C N N 185 ASP O O N N 186 ASP CB C N N 187 ASP CG C N N 188 ASP OD1 O N N 189 ASP OD2 O N N 190 ASP OXT O N N 191 ASP H H N N 192 ASP H2 H N N 193 ASP HA H N N 194 ASP HB2 H N N 195 ASP HB3 H N N 196 ASP HD2 H N N 197 ASP HXT H N N 198 CYS N N N N 199 CYS CA C N R 200 CYS C C N N 201 CYS O O N N 202 CYS CB C N N 203 CYS SG S N N 204 CYS OXT O N N 205 CYS H H N N 206 CYS H2 H N N 207 CYS HA H N N 208 CYS HB2 H N N 209 CYS HB3 H N N 210 CYS HG H N N 211 CYS HXT H N N 212 GLU N N N N 213 GLU CA C N S 214 GLU C C N N 215 GLU O O N N 216 GLU CB C N N 217 GLU CG C N N 218 GLU CD C N N 219 GLU OE1 O N N 220 GLU OE2 O N N 221 GLU OXT O N N 222 GLU H H N N 223 GLU H2 H N N 224 GLU HA H N N 225 GLU HB2 H N N 226 GLU HB3 H N N 227 GLU HG2 H N N 228 GLU HG3 H N N 229 GLU HE2 H N N 230 GLU HXT H N N 231 GLY N N N N 232 GLY CA C N N 233 GLY C C N N 234 GLY O O N N 235 GLY OXT O N N 236 GLY H H N N 237 GLY H2 H N N 238 GLY HA2 H N N 239 GLY HA3 H N N 240 GLY HXT H N N 241 HIS N N N N 242 HIS CA C N S 243 HIS C C N N 244 HIS O O N N 245 HIS CB C N N 246 HIS CG C Y N 247 HIS ND1 N Y N 248 HIS CD2 C Y N 249 HIS CE1 C Y N 250 HIS NE2 N Y N 251 HIS OXT O N N 252 HIS H H N N 253 HIS H2 H N N 254 HIS HA H N N 255 HIS HB2 H N N 256 HIS HB3 H N N 257 HIS HD1 H N N 258 HIS HD2 H N N 259 HIS HE1 H N N 260 HIS HE2 H N N 261 HIS HXT H N N 262 HOH O O N N 263 HOH H1 H N N 264 HOH H2 H N N 265 ILE N N N N 266 ILE CA C N S 267 ILE C C N N 268 ILE O O N N 269 ILE CB C N S 270 ILE CG1 C N N 271 ILE CG2 C N N 272 ILE CD1 C N N 273 ILE OXT O N N 274 ILE H H N N 275 ILE H2 H N N 276 ILE HA H N N 277 ILE HB H N N 278 ILE HG12 H N N 279 ILE HG13 H N N 280 ILE HG21 H N N 281 ILE HG22 H N N 282 ILE HG23 H N N 283 ILE HD11 H N N 284 ILE HD12 H N N 285 ILE HD13 H N N 286 ILE HXT H N N 287 LEU N N N N 288 LEU CA C N S 289 LEU C C N N 290 LEU O O N N 291 LEU CB C N N 292 LEU CG C N N 293 LEU CD1 C N N 294 LEU CD2 C N N 295 LEU OXT O N N 296 LEU H H N N 297 LEU H2 H N N 298 LEU HA H N N 299 LEU HB2 H N N 300 LEU HB3 H N N 301 LEU HG H N N 302 LEU HD11 H N N 303 LEU HD12 H N N 304 LEU HD13 H N N 305 LEU HD21 H N N 306 LEU HD22 H N N 307 LEU HD23 H N N 308 LEU HXT H N N 309 LYS N N N N 310 LYS CA C N S 311 LYS C C N N 312 LYS O O N N 313 LYS CB C N N 314 LYS CG C N N 315 LYS CD C N N 316 LYS CE C N N 317 LYS NZ N N N 318 LYS OXT O N N 319 LYS H H N N 320 LYS H2 H N N 321 LYS HA H N N 322 LYS HB2 H N N 323 LYS HB3 H N N 324 LYS HG2 H N N 325 LYS HG3 H N N 326 LYS HD2 H N N 327 LYS HD3 H N N 328 LYS HE2 H N N 329 LYS HE3 H N N 330 LYS HZ1 H N N 331 LYS HZ2 H N N 332 LYS HZ3 H N N 333 LYS HXT H N N 334 MET N N N N 335 MET CA C N S 336 MET C C N N 337 MET O O N N 338 MET CB C N N 339 MET CG C N N 340 MET SD S N N 341 MET CE C N N 342 MET OXT O N N 343 MET H H N N 344 MET H2 H N N 345 MET HA H N N 346 MET HB2 H N N 347 MET HB3 H N N 348 MET HG2 H N N 349 MET HG3 H N N 350 MET HE1 H N N 351 MET HE2 H N N 352 MET HE3 H N N 353 MET HXT H N N 354 PHE N N N N 355 PHE CA C N S 356 PHE C C N N 357 PHE O O N N 358 PHE CB C N N 359 PHE CG C Y N 360 PHE CD1 C Y N 361 PHE CD2 C Y N 362 PHE CE1 C Y N 363 PHE CE2 C Y N 364 PHE CZ C Y N 365 PHE OXT O N N 366 PHE H H N N 367 PHE H2 H N N 368 PHE HA H N N 369 PHE HB2 H N N 370 PHE HB3 H N N 371 PHE HD1 H N N 372 PHE HD2 H N N 373 PHE HE1 H N N 374 PHE HE2 H N N 375 PHE HZ H N N 376 PHE HXT H N N 377 PRO N N N N 378 PRO CA C N S 379 PRO C C N N 380 PRO O O N N 381 PRO CB C N N 382 PRO CG C N N 383 PRO CD C N N 384 PRO OXT O N N 385 PRO H H N N 386 PRO HA H N N 387 PRO HB2 H N N 388 PRO HB3 H N N 389 PRO HG2 H N N 390 PRO HG3 H N N 391 PRO HD2 H N N 392 PRO HD3 H N N 393 PRO HXT H N N 394 SER N N N N 395 SER CA C N S 396 SER C C N N 397 SER O O N N 398 SER CB C N N 399 SER OG O N N 400 SER OXT O N N 401 SER H H N N 402 SER H2 H N N 403 SER HA H N N 404 SER HB2 H N N 405 SER HB3 H N N 406 SER HG H N N 407 SER HXT H N N 408 THR N N N N 409 THR CA C N S 410 THR C C N N 411 THR O O N N 412 THR CB C N R 413 THR OG1 O N N 414 THR CG2 C N N 415 THR OXT O N N 416 THR H H N N 417 THR H2 H N N 418 THR HA H N N 419 THR HB H N N 420 THR HG1 H N N 421 THR HG21 H N N 422 THR HG22 H N N 423 THR HG23 H N N 424 THR HXT H N N 425 TRP N N N N 426 TRP CA C N S 427 TRP C C N N 428 TRP O O N N 429 TRP CB C N N 430 TRP CG C Y N 431 TRP CD1 C Y N 432 TRP CD2 C Y N 433 TRP NE1 N Y N 434 TRP CE2 C Y N 435 TRP CE3 C Y N 436 TRP CZ2 C Y N 437 TRP CZ3 C Y N 438 TRP CH2 C Y N 439 TRP OXT O N N 440 TRP H H N N 441 TRP H2 H N N 442 TRP HA H N N 443 TRP HB2 H N N 444 TRP HB3 H N N 445 TRP HD1 H N N 446 TRP HE1 H N N 447 TRP HE3 H N N 448 TRP HZ2 H N N 449 TRP HZ3 H N N 450 TRP HH2 H N N 451 TRP HXT H N N 452 TYR N N N N 453 TYR CA C N S 454 TYR C C N N 455 TYR O O N N 456 TYR CB C N N 457 TYR CG C Y N 458 TYR CD1 C Y N 459 TYR CD2 C Y N 460 TYR CE1 C Y N 461 TYR CE2 C Y N 462 TYR CZ C Y N 463 TYR OH O N N 464 TYR OXT O N N 465 TYR H H N N 466 TYR H2 H N N 467 TYR HA H N N 468 TYR HB2 H N N 469 TYR HB3 H N N 470 TYR HD1 H N N 471 TYR HD2 H N N 472 TYR HE1 H N N 473 TYR HE2 H N N 474 TYR HH H N N 475 TYR HXT H N N 476 VAL N N N N 477 VAL CA C N S 478 VAL C C N N 479 VAL O O N N 480 VAL CB C N N 481 VAL CG1 C N N 482 VAL CG2 C N N 483 VAL OXT O N N 484 VAL H H N N 485 VAL H2 H N N 486 VAL HA H N N 487 VAL HB H N N 488 VAL HG11 H N N 489 VAL HG12 H N N 490 VAL HG13 H N N 491 VAL HG21 H N N 492 VAL HG22 H N N 493 VAL HG23 H N N 494 VAL HXT H N N 495 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3PH O13 P sing N N 1 3PH O13 H13 sing N N 2 3PH P O14 sing N N 3 3PH P O12 doub N N 4 3PH P O11 sing N N 5 3PH O11 C1 sing N N 6 3PH C1 C2 sing N N 7 3PH C1 H11 sing N N 8 3PH C1 H12 sing N N 9 3PH C2 O21 sing N N 10 3PH C2 C3 sing N N 11 3PH C2 H2 sing N N 12 3PH O21 C21 sing N N 13 3PH C21 O22 doub N N 14 3PH C21 C22 sing N N 15 3PH C22 C23 sing N N 16 3PH C22 H221 sing N N 17 3PH C22 H222 sing N N 18 3PH C23 C24 sing N N 19 3PH C23 H231 sing N N 20 3PH C23 H232 sing N N 21 3PH C24 C25 sing N N 22 3PH C24 H241 sing N N 23 3PH C24 H242 sing N N 24 3PH C25 C26 sing N N 25 3PH C25 H251 sing N N 26 3PH C25 H252 sing N N 27 3PH C26 C27 sing N N 28 3PH C26 H261 sing N N 29 3PH C26 H262 sing N N 30 3PH C27 C28 sing N N 31 3PH C27 H271 sing N N 32 3PH C27 H272 sing N N 33 3PH C28 C29 sing N N 34 3PH C28 H281 sing N N 35 3PH C28 H282 sing N N 36 3PH C29 C2A sing N N 37 3PH C29 H291 sing N N 38 3PH C29 H292 sing N N 39 3PH C2A C2B sing N N 40 3PH C2A H2A1 sing N N 41 3PH C2A H2A2 sing N N 42 3PH C2B C2C sing N N 43 3PH C2B H2B1 sing N N 44 3PH C2B H2B2 sing N N 45 3PH C2C C2D sing N N 46 3PH C2C H2C1 sing N N 47 3PH C2C H2C2 sing N N 48 3PH C2D C2E sing N N 49 3PH C2D H2D1 sing N N 50 3PH C2D H2D2 sing N N 51 3PH C2E C2F sing N N 52 3PH C2E H2E1 sing N N 53 3PH C2E H2E2 sing N N 54 3PH C2F C2G sing N N 55 3PH C2F H2F1 sing N N 56 3PH C2F H2F2 sing N N 57 3PH C2G C2H sing N N 58 3PH C2G H2G1 sing N N 59 3PH C2G H2G2 sing N N 60 3PH C2H C2I sing N N 61 3PH C2H H2H1 sing N N 62 3PH C2H H2H2 sing N N 63 3PH C2I H2I1 sing N N 64 3PH C2I H2I2 sing N N 65 3PH C2I H2I3 sing N N 66 3PH C3 O31 sing N N 67 3PH C3 H31 sing N N 68 3PH C3 H32 sing N N 69 3PH O31 C31 sing N N 70 3PH C31 O32 doub N N 71 3PH C31 C32 sing N N 72 3PH C32 C33 sing N N 73 3PH C32 H321 sing N N 74 3PH C32 H322 sing N N 75 3PH C33 C34 sing N N 76 3PH C33 H331 sing N N 77 3PH C33 H332 sing N N 78 3PH C34 C35 sing N N 79 3PH C34 H341 sing N N 80 3PH C34 H342 sing N N 81 3PH C35 C36 sing N N 82 3PH C35 H351 sing N N 83 3PH C35 H352 sing N N 84 3PH C36 C37 sing N N 85 3PH C36 H361 sing N N 86 3PH C36 H362 sing N N 87 3PH C37 C38 sing N N 88 3PH C37 H371 sing N N 89 3PH C37 H372 sing N N 90 3PH C38 C39 sing N N 91 3PH C38 H381 sing N N 92 3PH C38 H382 sing N N 93 3PH C39 C3A sing N N 94 3PH C39 H391 sing N N 95 3PH C39 H392 sing N N 96 3PH C3A C3B sing N N 97 3PH C3A H3A1 sing N N 98 3PH C3A H3A2 sing N N 99 3PH C3B C3C sing N N 100 3PH C3B H3B1 sing N N 101 3PH C3B H3B2 sing N N 102 3PH C3C C3D sing N N 103 3PH C3C H3C1 sing N N 104 3PH C3C H3C2 sing N N 105 3PH C3D C3E sing N N 106 3PH C3D H3D1 sing N N 107 3PH C3D H3D2 sing N N 108 3PH C3E C3F sing N N 109 3PH C3E H3E1 sing N N 110 3PH C3E H3E2 sing N N 111 3PH C3F C3G sing N N 112 3PH C3F H3F1 sing N N 113 3PH C3F H3F2 sing N N 114 3PH C3G C3H sing N N 115 3PH C3G H3G1 sing N N 116 3PH C3G H3G2 sing N N 117 3PH C3H C3I sing N N 118 3PH C3H H3H1 sing N N 119 3PH C3H H3H2 sing N N 120 3PH C3I H3I1 sing N N 121 3PH C3I H3I2 sing N N 122 3PH C3I H3I3 sing N N 123 3PH O14 H77 sing N N 124 ALA N CA sing N N 125 ALA N H sing N N 126 ALA N H2 sing N N 127 ALA CA C sing N N 128 ALA CA CB sing N N 129 ALA CA HA sing N N 130 ALA C O doub N N 131 ALA C OXT sing N N 132 ALA CB HB1 sing N N 133 ALA CB HB2 sing N N 134 ALA CB HB3 sing N N 135 ALA OXT HXT sing N N 136 ARG N CA sing N N 137 ARG N H sing N N 138 ARG N H2 sing N N 139 ARG CA C sing N N 140 ARG CA CB sing N N 141 ARG CA HA sing N N 142 ARG C O doub N N 143 ARG C OXT sing N N 144 ARG CB CG sing N N 145 ARG CB HB2 sing N N 146 ARG CB HB3 sing N N 147 ARG CG CD sing N N 148 ARG CG HG2 sing N N 149 ARG CG HG3 sing N N 150 ARG CD NE sing N N 151 ARG CD HD2 sing N N 152 ARG CD HD3 sing N N 153 ARG NE CZ sing N N 154 ARG NE HE sing N N 155 ARG CZ NH1 sing N N 156 ARG CZ NH2 doub N N 157 ARG NH1 HH11 sing N N 158 ARG NH1 HH12 sing N N 159 ARG NH2 HH21 sing N N 160 ARG NH2 HH22 sing N N 161 ARG OXT HXT sing N N 162 ASN N CA sing N N 163 ASN N H sing N N 164 ASN N H2 sing N N 165 ASN CA C sing N N 166 ASN CA CB sing N N 167 ASN CA HA sing N N 168 ASN C O doub N N 169 ASN C OXT sing N N 170 ASN CB CG sing N N 171 ASN CB HB2 sing N N 172 ASN CB HB3 sing N N 173 ASN CG OD1 doub N N 174 ASN CG ND2 sing N N 175 ASN ND2 HD21 sing N N 176 ASN ND2 HD22 sing N N 177 ASN OXT HXT sing N N 178 ASP N CA sing N N 179 ASP N H sing N N 180 ASP N H2 sing N N 181 ASP CA C sing N N 182 ASP CA CB sing N N 183 ASP CA HA sing N N 184 ASP C O doub N N 185 ASP C OXT sing N N 186 ASP CB CG sing N N 187 ASP CB HB2 sing N N 188 ASP CB HB3 sing N N 189 ASP CG OD1 doub N N 190 ASP CG OD2 sing N N 191 ASP OD2 HD2 sing N N 192 ASP OXT HXT sing N N 193 CYS N CA sing N N 194 CYS N H sing N N 195 CYS N H2 sing N N 196 CYS CA C sing N N 197 CYS CA CB sing N N 198 CYS CA HA sing N N 199 CYS C O doub N N 200 CYS C OXT sing N N 201 CYS CB SG sing N N 202 CYS CB HB2 sing N N 203 CYS CB HB3 sing N N 204 CYS SG HG sing N N 205 CYS OXT HXT sing N N 206 GLU N CA sing N N 207 GLU N H sing N N 208 GLU N H2 sing N N 209 GLU CA C sing N N 210 GLU CA CB sing N N 211 GLU CA HA sing N N 212 GLU C O doub N N 213 GLU C OXT sing N N 214 GLU CB CG sing N N 215 GLU CB HB2 sing N N 216 GLU CB HB3 sing N N 217 GLU CG CD sing N N 218 GLU CG HG2 sing N N 219 GLU CG HG3 sing N N 220 GLU CD OE1 doub N N 221 GLU CD OE2 sing N N 222 GLU OE2 HE2 sing N N 223 GLU OXT HXT sing N N 224 GLY N CA sing N N 225 GLY N H sing N N 226 GLY N H2 sing N N 227 GLY CA C sing N N 228 GLY CA HA2 sing N N 229 GLY CA HA3 sing N N 230 GLY C O doub N N 231 GLY C OXT sing N N 232 GLY OXT HXT sing N N 233 HIS N CA sing N N 234 HIS N H sing N N 235 HIS N H2 sing N N 236 HIS CA C sing N N 237 HIS CA CB sing N N 238 HIS CA HA sing N N 239 HIS C O doub N N 240 HIS C OXT sing N N 241 HIS CB CG sing N N 242 HIS CB HB2 sing N N 243 HIS CB HB3 sing N N 244 HIS CG ND1 sing Y N 245 HIS CG CD2 doub Y N 246 HIS ND1 CE1 doub Y N 247 HIS ND1 HD1 sing N N 248 HIS CD2 NE2 sing Y N 249 HIS CD2 HD2 sing N N 250 HIS CE1 NE2 sing Y N 251 HIS CE1 HE1 sing N N 252 HIS NE2 HE2 sing N N 253 HIS OXT HXT sing N N 254 HOH O H1 sing N N 255 HOH O H2 sing N N 256 ILE N CA sing N N 257 ILE N H sing N N 258 ILE N H2 sing N N 259 ILE CA C sing N N 260 ILE CA CB sing N N 261 ILE CA HA sing N N 262 ILE C O doub N N 263 ILE C OXT sing N N 264 ILE CB CG1 sing N N 265 ILE CB CG2 sing N N 266 ILE CB HB sing N N 267 ILE CG1 CD1 sing N N 268 ILE CG1 HG12 sing N N 269 ILE CG1 HG13 sing N N 270 ILE CG2 HG21 sing N N 271 ILE CG2 HG22 sing N N 272 ILE CG2 HG23 sing N N 273 ILE CD1 HD11 sing N N 274 ILE CD1 HD12 sing N N 275 ILE CD1 HD13 sing N N 276 ILE OXT HXT sing N N 277 LEU N CA sing N N 278 LEU N H sing N N 279 LEU N H2 sing N N 280 LEU CA C sing N N 281 LEU CA CB sing N N 282 LEU CA HA sing N N 283 LEU C O doub N N 284 LEU C OXT sing N N 285 LEU CB CG sing N N 286 LEU CB HB2 sing N N 287 LEU CB HB3 sing N N 288 LEU CG CD1 sing N N 289 LEU CG CD2 sing N N 290 LEU CG HG sing N N 291 LEU CD1 HD11 sing N N 292 LEU CD1 HD12 sing N N 293 LEU CD1 HD13 sing N N 294 LEU CD2 HD21 sing N N 295 LEU CD2 HD22 sing N N 296 LEU CD2 HD23 sing N N 297 LEU OXT HXT sing N N 298 LYS N CA sing N N 299 LYS N H sing N N 300 LYS N H2 sing N N 301 LYS CA C sing N N 302 LYS CA CB sing N N 303 LYS CA HA sing N N 304 LYS C O doub N N 305 LYS C OXT sing N N 306 LYS CB CG sing N N 307 LYS CB HB2 sing N N 308 LYS CB HB3 sing N N 309 LYS CG CD sing N N 310 LYS CG HG2 sing N N 311 LYS CG HG3 sing N N 312 LYS CD CE sing N N 313 LYS CD HD2 sing N N 314 LYS CD HD3 sing N N 315 LYS CE NZ sing N N 316 LYS CE HE2 sing N N 317 LYS CE HE3 sing N N 318 LYS NZ HZ1 sing N N 319 LYS NZ HZ2 sing N N 320 LYS NZ HZ3 sing N N 321 LYS OXT HXT sing N N 322 MET N CA sing N N 323 MET N H sing N N 324 MET N H2 sing N N 325 MET CA C sing N N 326 MET CA CB sing N N 327 MET CA HA sing N N 328 MET C O doub N N 329 MET C OXT sing N N 330 MET CB CG sing N N 331 MET CB HB2 sing N N 332 MET CB HB3 sing N N 333 MET CG SD sing N N 334 MET CG HG2 sing N N 335 MET CG HG3 sing N N 336 MET SD CE sing N N 337 MET CE HE1 sing N N 338 MET CE HE2 sing N N 339 MET CE HE3 sing N N 340 MET OXT HXT sing N N 341 PHE N CA sing N N 342 PHE N H sing N N 343 PHE N H2 sing N N 344 PHE CA C sing N N 345 PHE CA CB sing N N 346 PHE CA HA sing N N 347 PHE C O doub N N 348 PHE C OXT sing N N 349 PHE CB CG sing N N 350 PHE CB HB2 sing N N 351 PHE CB HB3 sing N N 352 PHE CG CD1 doub Y N 353 PHE CG CD2 sing Y N 354 PHE CD1 CE1 sing Y N 355 PHE CD1 HD1 sing N N 356 PHE CD2 CE2 doub Y N 357 PHE CD2 HD2 sing N N 358 PHE CE1 CZ doub Y N 359 PHE CE1 HE1 sing N N 360 PHE CE2 CZ sing Y N 361 PHE CE2 HE2 sing N N 362 PHE CZ HZ sing N N 363 PHE OXT HXT sing N N 364 PRO N CA sing N N 365 PRO N CD sing N N 366 PRO N H sing N N 367 PRO CA C sing N N 368 PRO CA CB sing N N 369 PRO CA HA sing N N 370 PRO C O doub N N 371 PRO C OXT sing N N 372 PRO CB CG sing N N 373 PRO CB HB2 sing N N 374 PRO CB HB3 sing N N 375 PRO CG CD sing N N 376 PRO CG HG2 sing N N 377 PRO CG HG3 sing N N 378 PRO CD HD2 sing N N 379 PRO CD HD3 sing N N 380 PRO OXT HXT sing N N 381 SER N CA sing N N 382 SER N H sing N N 383 SER N H2 sing N N 384 SER CA C sing N N 385 SER CA CB sing N N 386 SER CA HA sing N N 387 SER C O doub N N 388 SER C OXT sing N N 389 SER CB OG sing N N 390 SER CB HB2 sing N N 391 SER CB HB3 sing N N 392 SER OG HG sing N N 393 SER OXT HXT sing N N 394 THR N CA sing N N 395 THR N H sing N N 396 THR N H2 sing N N 397 THR CA C sing N N 398 THR CA CB sing N N 399 THR CA HA sing N N 400 THR C O doub N N 401 THR C OXT sing N N 402 THR CB OG1 sing N N 403 THR CB CG2 sing N N 404 THR CB HB sing N N 405 THR OG1 HG1 sing N N 406 THR CG2 HG21 sing N N 407 THR CG2 HG22 sing N N 408 THR CG2 HG23 sing N N 409 THR OXT HXT sing N N 410 TRP N CA sing N N 411 TRP N H sing N N 412 TRP N H2 sing N N 413 TRP CA C sing N N 414 TRP CA CB sing N N 415 TRP CA HA sing N N 416 TRP C O doub N N 417 TRP C OXT sing N N 418 TRP CB CG sing N N 419 TRP CB HB2 sing N N 420 TRP CB HB3 sing N N 421 TRP CG CD1 doub Y N 422 TRP CG CD2 sing Y N 423 TRP CD1 NE1 sing Y N 424 TRP CD1 HD1 sing N N 425 TRP CD2 CE2 doub Y N 426 TRP CD2 CE3 sing Y N 427 TRP NE1 CE2 sing Y N 428 TRP NE1 HE1 sing N N 429 TRP CE2 CZ2 sing Y N 430 TRP CE3 CZ3 doub Y N 431 TRP CE3 HE3 sing N N 432 TRP CZ2 CH2 doub Y N 433 TRP CZ2 HZ2 sing N N 434 TRP CZ3 CH2 sing Y N 435 TRP CZ3 HZ3 sing N N 436 TRP CH2 HH2 sing N N 437 TRP OXT HXT sing N N 438 TYR N CA sing N N 439 TYR N H sing N N 440 TYR N H2 sing N N 441 TYR CA C sing N N 442 TYR CA CB sing N N 443 TYR CA HA sing N N 444 TYR C O doub N N 445 TYR C OXT sing N N 446 TYR CB CG sing N N 447 TYR CB HB2 sing N N 448 TYR CB HB3 sing N N 449 TYR CG CD1 doub Y N 450 TYR CG CD2 sing Y N 451 TYR CD1 CE1 sing Y N 452 TYR CD1 HD1 sing N N 453 TYR CD2 CE2 doub Y N 454 TYR CD2 HD2 sing N N 455 TYR CE1 CZ doub Y N 456 TYR CE1 HE1 sing N N 457 TYR CE2 CZ sing Y N 458 TYR CE2 HE2 sing N N 459 TYR CZ OH sing N N 460 TYR OH HH sing N N 461 TYR OXT HXT sing N N 462 VAL N CA sing N N 463 VAL N H sing N N 464 VAL N H2 sing N N 465 VAL CA C sing N N 466 VAL CA CB sing N N 467 VAL CA HA sing N N 468 VAL C O doub N N 469 VAL C OXT sing N N 470 VAL CB CG1 sing N N 471 VAL CB CG2 sing N N 472 VAL CB HB sing N N 473 VAL CG1 HG11 sing N N 474 VAL CG1 HG12 sing N N 475 VAL CG1 HG13 sing N N 476 VAL CG2 HG21 sing N N 477 VAL CG2 HG22 sing N N 478 VAL CG2 HG23 sing N N 479 VAL OXT HXT sing N N 480 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE 3PH 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1G13 _pdbx_initial_refinement_model.details 'monomer A of pdb entry 1G13' #