HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 25-JUN-03 1PUL TITLE SOLUTION STRUCTURE FOR THE 21KDA CAENORHABDITIS ELEGANS PROTEIN TITLE 2 CE32E8.3. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET WR33 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN C32E8.3 IN CHROMOSOME I; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 GENE: C32E8.3; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B-WR33 KEYWDS ALPHA HELICAL, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NESG, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR R.TEJERO,J.M.ARAMINI,G.V.T.SWAPNA,D.MONLEON,Y.CHIANG,D.MACAPAGAL, AUTHOR 2 K.C.GUNSALUS,S.KIM,T.SZYPERSKI,G.T.MONTELIONE,NORTHEAST STRUCTURAL AUTHOR 3 GENOMICS CONSORTIUM (NESG) REVDAT 4 02-MAR-22 1PUL 1 REMARK SEQADV REVDAT 3 24-FEB-09 1PUL 1 VERSN REVDAT 2 18-APR-06 1PUL 1 AUTHOR REVDAT 1 21-JUN-05 1PUL 0 JRNL AUTH D.MONLEON,Y.CHIANG,J.M.ARAMINI,G.V.SWAPNA,D.MACAPAGAL, JRNL AUTH 2 K.C.GUNSALUS,S.KIM,T.SZYPERSKI,G.T.MONTELIONE JRNL TITL BACKBONE 1H, 15N AND 13C ASSIGNMENTS FOR THE 21 KDA JRNL TITL 2 CAENORHABDITIS ELEGANS HOMOLOGUE OF "BRAIN-SPECIFIC" JRNL TITL 3 PROTEIN. JRNL REF J.BIOMOL.NMR V. 28 91 2004 JRNL REFN ISSN 0925-2738 JRNL PMID 14739645 JRNL DOI 10.1023/B:JNMR.0000012832.71049.BF REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, DYANA 1.5, AUTOSTRUCTURE 2.1.0, CNS 1.1 REMARK 3 AUTHORS : GUNTERT (DYANA), HUANG, MONTELIONE REMARK 3 (AUTOSTRUCTURE), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL 729 CONFORMATIONALLY- REMARK 3 RESTRICTING REMARK 3 NOE-DERIVED DISTANCE CONSTRAINTS, 260 DIHEDRAL ANGLE CONSTRAINTS, REMARK 3 AND 50 HYDROGEN BOND CONSTRAINTS (9.3 CONSTRAINTS PER RESIDUE; 1.2 REMARK 3 LONG-RANGE CONSTRAINTS PER RESIDUE). STRUCTURE DETERMINATION WAS REMARK 3 PERFORMED ITERATIVELY USING AUTOSTRUCTURE (DYANA). THE 10 REMARK 3 STRUCTURES WITH THE LOWEST TARGET FUNCTION WERE FURTHER REFINED BY REMARK 3 RESTRAINED MOLECULAR DYNAMICS/ENERGY MINIMIZATION IN EXPLICIT REMARK 3 WATER (CNS). THE UNSTRUCTURED N- (1 TO 17) AND C- (121 TO 125) REMARK 3 TERMINAL REGIONS OF THE MOLECULE ARE OMITTED FROM THIS DEPOSITION. REMARK 4 REMARK 4 1PUL COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019579. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM WR33 U-15N,13C; 20MM REMARK 210 NAH2PO4, 50MM NACL, 10MM DTT, REMARK 210 0.02% AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D 15N-NOESY; 3D 13C-NOESY; 2D REMARK 210 15N,1H HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 2.1, SPARKY 3.106, REMARK 210 AUTOASSIGN 1.11.0, TALOS 2.1, REMARK 210 PSVS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 56 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. AUTOMATIC BACKBONE ASSIGNMENTS WERE MADE USING REMARK 210 AUTOASSIGN. MANUAL SIDE CHAIN ASSIGNMENTS. AUTOMATIC NOESY REMARK 210 ASSIGNMENTS AS WELL AS DISTANCE AND HYDROGEN BOND CONSTRAINTS REMARK 210 WERE DETERMINED USING AUTOSTRUCTURE. DIHEDRAL ANGLE CONSTRAINTS REMARK 210 WERE DETERMINED USING HYPER AND TALOS. FINAL STRUCTURE QUALITY REMARK 210 FACTORS FOR THE ENSEMBLE (RESIDUES 18 TO 120), WHERE ORDERED REMARK 210 RESIDUES [S(PHI) + S(PSI) > 1.8] COMPRISE 19-33,42-56,61-62,64- REMARK 210 74,77-79,83-119: (A) RMSD FOR ORDERED RESIDUES: BB, 1.2; HEAVY REMARK 210 ATOM, 1.7 (B) RAMACHANDRAN STATISTICS FOR ORDERED RESIDUES: MOST REMARK 210 FAVORED: 93.0%; ADDITIONALLY ALLOWED: 5.7%; GENEROUSLY ALLOWED, REMARK 210 0.8%; DISALLOWED, 0.5% (C) PROCHECK SCORES FOR ORDERED RESIDUES REMARK 210 (RAW/Z-): BB, 0.20/1.10; ALL, -0.02/-0.12. (D) MAGE MOLPROBITY REMARK 210 CLASH SCORE (RAW/Z-): 33.54/-4.23. (E) RPF SCORES FOR GOODNESS REMARK 210 OF FIT TO NOESY DATA: F-MEASURE, 0.834; RECALL, 0.900; PRECISION, REMARK 210 0.776; DP-SCORE, 0.606. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 MET A 11 REMARK 465 ALA A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 ALA A 15 REMARK 465 GLY A 16 REMARK 465 PHE A 17 REMARK 465 ALA A 121 REMARK 465 PRO A 122 REMARK 465 SER A 123 REMARK 465 VAL A 124 REMARK 465 GLY A 125 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H MET A 42 HD3 LYS A 80 1.28 REMARK 500 HG2 LYS A 80 H ALA A 81 1.29 REMARK 500 OD2 ASP A 29 HZ3 LYS A 33 1.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 38 74.85 -107.30 REMARK 500 1 ALA A 39 93.65 -161.05 REMARK 500 1 THR A 40 61.39 61.66 REMARK 500 1 PRO A 77 -168.48 -69.49 REMARK 500 1 LYS A 79 -75.25 -67.39 REMARK 500 1 LYS A 80 -167.39 179.54 REMARK 500 1 ALA A 81 -118.09 -149.51 REMARK 500 1 THR A 82 -167.30 -168.12 REMARK 500 1 LYS A 103 -52.27 105.28 REMARK 500 2 PHE A 34 -152.34 -89.36 REMARK 500 2 ALA A 39 42.45 -85.45 REMARK 500 2 GLU A 41 148.45 -172.01 REMARK 500 2 THR A 75 -86.38 -130.02 REMARK 500 2 LYS A 80 -152.11 56.97 REMARK 500 2 ALA A 81 -94.91 -117.45 REMARK 500 2 THR A 82 -139.70 163.99 REMARK 500 2 SER A 101 -76.19 -80.94 REMARK 500 2 LYS A 102 -76.03 -100.99 REMARK 500 2 LYS A 103 -54.18 173.04 REMARK 500 3 ALA A 36 129.82 172.67 REMARK 500 3 THR A 38 21.15 -159.19 REMARK 500 3 ASN A 59 -6.28 70.55 REMARK 500 3 THR A 75 110.69 174.24 REMARK 500 3 ALA A 81 -92.74 -146.34 REMARK 500 3 THR A 82 -175.85 172.32 REMARK 500 3 SER A 101 -60.08 -93.49 REMARK 500 3 LYS A 103 -64.31 103.07 REMARK 500 4 ALA A 36 153.74 179.39 REMARK 500 4 THR A 38 -88.32 -139.55 REMARK 500 4 ASP A 58 69.87 -165.16 REMARK 500 4 ASN A 59 -69.02 -103.23 REMARK 500 4 LYS A 60 -48.73 177.54 REMARK 500 4 LYS A 80 173.45 77.44 REMARK 500 4 THR A 82 -157.11 -100.39 REMARK 500 4 SER A 101 -65.03 -100.45 REMARK 500 4 LYS A 102 -76.74 -101.70 REMARK 500 4 LYS A 103 -54.89 163.16 REMARK 500 5 ALA A 36 68.39 61.73 REMARK 500 5 LEU A 57 -165.93 -79.38 REMARK 500 5 ASP A 58 82.15 -63.66 REMARK 500 5 LYS A 60 -78.71 -134.47 REMARK 500 5 THR A 75 115.55 177.02 REMARK 500 5 ALA A 81 -84.75 -108.45 REMARK 500 5 THR A 82 -164.60 177.95 REMARK 500 5 GLU A 85 -72.84 -41.75 REMARK 500 5 SER A 101 -75.66 -100.58 REMARK 500 5 LYS A 103 -59.10 101.90 REMARK 500 5 LEU A 119 32.05 -69.10 REMARK 500 6 LYS A 33 -79.45 -93.56 REMARK 500 6 ASP A 58 76.11 51.95 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: WR33 RELATED DB: TARGETDB DBREF 1PUL A 11 125 UNP P91127 YBYK_CAEEL 1 115 SEQADV 1PUL MET A 1 UNP P91127 EXPRESSION TAG SEQADV 1PUL GLY A 2 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 3 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 4 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 5 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 6 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 7 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 8 UNP P91127 EXPRESSION TAG SEQADV 1PUL SER A 9 UNP P91127 EXPRESSION TAG SEQADV 1PUL HIS A 10 UNP P91127 EXPRESSION TAG SEQRES 1 A 125 MET GLY HIS HIS HIS HIS HIS HIS SER HIS MET ALA ALA SEQRES 2 A 125 ALA ALA GLY PHE ASN TRP ASP ASP ALA ASP VAL LYS LYS SEQRES 3 A 125 ARG TRP ASP ALA PHE THR LYS PHE GLY ALA ALA THR ALA SEQRES 4 A 125 THR GLU MET THR GLY LYS ASN PHE ASP LYS TRP LEU LYS SEQRES 5 A 125 ASP ALA GLY VAL LEU ASP ASN LYS ALA ILE THR GLY THR SEQRES 6 A 125 MET THR GLY ILE ALA PHE SER LYS VAL THR GLY PRO LYS SEQRES 7 A 125 LYS LYS ALA THR PHE ASP GLU THR LYS LYS VAL LEU ALA SEQRES 8 A 125 PHE VAL ALA GLU ASP ARG ALA ARG GLN SER LYS LYS PRO SEQRES 9 A 125 ILE GLN ASP GLU LEU ASP ALA ILE THR GLU LYS LEU ALA SEQRES 10 A 125 LYS LEU GLU ALA PRO SER VAL GLY HELIX 1 1 ASP A 20 GLY A 35 1 16 HELIX 2 2 THR A 43 GLY A 55 1 13 HELIX 3 3 THR A 63 THR A 75 1 13 HELIX 4 4 THR A 82 LYS A 102 1 21 HELIX 5 5 PRO A 104 LEU A 119 1 16 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1