HEADER CONTRACTILE PROTEIN 02-JUL-03 1PWK TITLE STRUCTURE OF THE MONOMERIC 8-KDA DYNEIN LIGHT CHAIN AND MECHANISM OF TITLE 2 DOMAIN SWAPPED DIMER ASSEMBLY COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN-2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MONOMERIC 8-KDA DYNEIN LIGHT CHAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS DYNEIN, DYNEIN LIGHT CHAIN, DIMER-MONOMER EQUILIBRIUM, DOMAIN KEYWDS 2 SWAPPING, CONTRACTILE PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR W.WANG,K.W.-H.LO,H.-M.KAN,J.-S.FAN,M.ZHANG REVDAT 4 29-MAY-24 1PWK 1 REMARK REVDAT 3 02-MAR-22 1PWK 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PWK 1 VERSN REVDAT 1 21-OCT-03 1PWK 0 JRNL AUTH W.WANG,K.W.-H.LO,H.-M.KAN,J.-S.FAN,M.ZHANG JRNL TITL STRUCTURE OF THE MONOMERIC 8-KDA DYNEIN LIGHT CHAIN AND JRNL TITL 2 MECHANISM OF THE DOMAIN-SWAPPED DIMER ASSEMBLY JRNL REF J.BIOL.CHEM. V. 278 41491 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12904292 JRNL DOI 10.1074/JBC.M307118200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PWK COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019639. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303.3 REMARK 210 PH : 3.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1MM DLC8BINSSG U-15N REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, CNS 1.0 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 2 85.48 -152.62 REMARK 500 1 ARG A 4 70.66 -179.57 REMARK 500 1 LYS A 5 -86.50 -56.09 REMARK 500 1 ALA A 6 77.00 59.83 REMARK 500 1 ALA A 11 118.00 -160.53 REMARK 500 1 ASP A 12 43.08 -105.85 REMARK 500 1 GLU A 15 -37.47 141.50 REMARK 500 1 LYS A 49 20.16 -150.29 REMARK 500 1 TYR A 50 7.85 -152.51 REMARK 500 1 ASN A 51 120.97 80.97 REMARK 500 1 CYS A 56 91.71 -60.08 REMARK 500 1 ARG A 60 77.61 -151.71 REMARK 500 1 ASN A 63 58.04 -166.64 REMARK 500 1 PHE A 64 42.11 -90.04 REMARK 500 1 SER A 66 29.32 -155.21 REMARK 500 1 TYR A 67 25.40 -173.08 REMARK 500 1 THR A 69 -73.97 -70.71 REMARK 500 1 HIS A 70 23.05 43.33 REMARK 500 1 HIS A 74 130.66 166.74 REMARK 500 1 GLN A 82 -16.37 82.48 REMARK 500 2 SER A 2 63.05 -107.11 REMARK 500 2 LYS A 5 -19.79 79.19 REMARK 500 2 ALA A 6 86.93 -65.94 REMARK 500 2 GLU A 15 -25.97 90.09 REMARK 500 2 LYS A 49 54.37 -159.76 REMARK 500 2 TYR A 50 -39.41 -171.56 REMARK 500 2 ASN A 51 125.60 125.94 REMARK 500 2 HIS A 55 52.91 -104.81 REMARK 500 2 ARG A 60 68.74 -107.69 REMARK 500 2 TYR A 67 -31.95 -160.00 REMARK 500 2 HIS A 70 14.07 52.18 REMARK 500 2 GLU A 71 39.70 85.01 REMARK 500 2 LYS A 73 -39.11 93.53 REMARK 500 2 PHE A 75 155.55 171.29 REMARK 500 2 GLN A 82 -21.85 84.19 REMARK 500 3 ARG A 4 70.69 -158.47 REMARK 500 3 LYS A 5 -75.14 -119.69 REMARK 500 3 ALA A 6 93.31 36.76 REMARK 500 3 ASP A 12 69.12 -150.93 REMARK 500 3 GLU A 15 -15.40 88.21 REMARK 500 3 TYR A 32 -143.92 -131.83 REMARK 500 3 ASN A 33 -11.20 141.96 REMARK 500 3 GLU A 35 -33.34 89.28 REMARK 500 3 LYS A 49 30.67 178.68 REMARK 500 3 ASN A 51 77.16 145.76 REMARK 500 3 ARG A 60 -82.65 -60.71 REMARK 500 3 ASN A 63 57.92 172.06 REMARK 500 3 PHE A 64 45.05 -160.08 REMARK 500 3 TYR A 67 33.39 175.44 REMARK 500 3 HIS A 70 22.29 44.87 REMARK 500 REMARK 500 THIS ENTRY HAS 348 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F3C RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DLC8 DIMER REMARK 900 RELATED ID: 1F95 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DLC8/BIM PEPTIDE COMPLEX REMARK 900 RELATED ID: 1F96 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF DLC8/NNOS PEPTIDE COMPLEX REMARK 900 RELATED ID: 1PWJ RELATED DB: PDB REMARK 900 WILD TYPE OF THE SAME PROTEIN DBREF 1PWK A 1 91 UNP Q9D0M5 DYL2_MOUSE 1 89 SEQADV 1PWK SER A 61 UNP Q9D0M5 INSERTION SEQADV 1PWK GLY A 62 UNP Q9D0M5 INSERTION SEQRES 1 A 91 MET SER ASP ARG LYS ALA VAL ILE LYS ASN ALA ASP MET SEQRES 2 A 91 SER GLU ASP MET GLN GLN ASP ALA VAL ASP CYS ALA THR SEQRES 3 A 91 GLN ALA MET GLU LYS TYR ASN ILE GLU LYS ASP ILE ALA SEQRES 4 A 91 ALA TYR ILE LYS LYS GLU PHE ASP LYS LYS TYR ASN PRO SEQRES 5 A 91 THR TRP HIS CYS ILE VAL GLY ARG SER GLY ASN PHE GLY SEQRES 6 A 91 SER TYR VAL THR HIS GLU THR LYS HIS PHE ILE TYR PHE SEQRES 7 A 91 TYR LEU GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY HELIX 1 1 GLU A 15 TYR A 32 1 18 HELIX 2 2 GLU A 35 ASN A 51 1 17 SHEET 1 A 4 VAL A 7 ALA A 11 0 SHEET 2 A 4 PHE A 75 LEU A 80 -1 O TYR A 77 N ASN A 10 SHEET 3 A 4 VAL A 83 PHE A 88 -1 O LEU A 87 N ILE A 76 SHEET 4 A 4 ILE A 57 GLY A 59 -1 N ILE A 57 O LEU A 86 CISPEP 1 PRO A 52 THR A 53 1 -0.11 CISPEP 2 PRO A 52 THR A 53 2 -0.44 CISPEP 3 PRO A 52 THR A 53 3 -0.25 CISPEP 4 PRO A 52 THR A 53 4 0.15 CISPEP 5 PRO A 52 THR A 53 5 -0.33 CISPEP 6 PRO A 52 THR A 53 6 0.20 CISPEP 7 PRO A 52 THR A 53 7 -0.61 CISPEP 8 PRO A 52 THR A 53 8 -0.03 CISPEP 9 PRO A 52 THR A 53 9 0.16 CISPEP 10 PRO A 52 THR A 53 10 0.08 CISPEP 11 PRO A 52 THR A 53 11 -0.61 CISPEP 12 PRO A 52 THR A 53 12 -0.14 CISPEP 13 PRO A 52 THR A 53 13 -0.29 CISPEP 14 PRO A 52 THR A 53 14 -0.10 CISPEP 15 PRO A 52 THR A 53 15 -0.28 CISPEP 16 PRO A 52 THR A 53 16 -0.17 CISPEP 17 PRO A 52 THR A 53 17 -0.18 CISPEP 18 PRO A 52 THR A 53 18 -0.25 CISPEP 19 PRO A 52 THR A 53 19 -0.03 CISPEP 20 PRO A 52 THR A 53 20 -0.12 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1