HEADER LYASE 02-JUL-03 1PX0 TITLE CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH TITLE 2 THE HALOALCOHOL MIMIC (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL COMPND MOL_ID: 1; COMPND 2 MOLECULE: HALOHYDRIN DEHALOGENASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS; SOURCE 3 ORGANISM_TAXID: 358; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PGEF KEYWDS HALOALCOHOL DEHALOGENASE, HALOHYDRIN DEHALOGENASE, HALOHYDRIN KEYWDS 2 HYDROGEN-HALIDE LYASE, SDR FAMILY, SHORT-CHAIN KEYWDS 3 DEHYDROGENASE/REDUCTASE, ROSSMANN FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR R.M.DE JONG,J.J.W.TIESINGA,H.J.ROZEBOOM,K.H.KALK,L.TANG,D.B.JANSSEN, AUTHOR 2 B.W.DIJKSTRA REVDAT 3 16-AUG-23 1PX0 1 REMARK REVDAT 2 24-FEB-09 1PX0 1 VERSN REVDAT 1 07-OCT-03 1PX0 0 JRNL AUTH R.M.DE JONG,J.J.W.TIESINGA,H.J.ROZEBOOM,K.H.KALK,L.TANG, JRNL AUTH 2 D.B.JANSSEN,B.W.DIJKSTRA JRNL TITL STRUCTURE AND MECHANISM OF A BACTERIAL HALOALCOHOL JRNL TITL 2 DEHALOGENASE: A NEW VARIATION OF THE SHORT-CHAIN JRNL TITL 3 DEHYDROGENASE/REDUCTASE FOLD WITHOUT AN NAD(P)H BINDING SITE JRNL REF EMBO J. V. 22 4933 2003 JRNL REFN ISSN 0261-4189 JRNL PMID 14517233 JRNL DOI 10.1093/EMBOJ/CDG479 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2847900.290 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 78666 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.800 REMARK 3 FREE R VALUE TEST SET COUNT : 4547 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 83213 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 11747 REMARK 3 BIN R VALUE (WORKING SET) : 0.1860 REMARK 3 BIN FREE R VALUE : 0.2150 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 719 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.008 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7668 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 902 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 8.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.11000 REMARK 3 B22 (A**2) : -0.20000 REMARK 3 B33 (A**2) : -0.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.07 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.11 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.030 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.400 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.640 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.270 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 51.80 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : RNSAA2.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : RNSAA2.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PX0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019654. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78669 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.18500 REMARK 200 R SYM FOR SHELL (I) : 0.21700 REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PWX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, BIS-TRIS BUFFER, PH REMARK 280 6.9, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.35150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.92150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.35150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.92150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND PART OF THE TETRAMERIC BIOLOGICAL ASSEMBLY IS REMARK 300 GENERATED BY THE TWO FOLD AXIS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -112.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 254 REMARK 465 MET B 1 REMARK 465 GLU B 254 REMARK 465 MET C 1 REMARK 465 GLU C 254 REMARK 465 MET D 1 REMARK 465 GLU D 254 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 23 CG CD OE1 OE2 REMARK 470 GLU A 33 CG CD OE1 OE2 REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 38 CG CD CE NZ REMARK 470 ASP A 39 CG OD1 OD2 REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 GLU A 61 CG CD OE1 OE2 REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 215 CG CD CE NZ REMARK 470 GLU B 33 CG CD OE1 OE2 REMARK 470 LYS B 38 CG CD CE NZ REMARK 470 ASP B 39 CG OD1 OD2 REMARK 470 GLU B 46 CG CD OE1 OE2 REMARK 470 GLU B 64 CG CD OE1 OE2 REMARK 470 GLU B 95 CG CD OE1 OE2 REMARK 470 LYS B 121 CG CD CE NZ REMARK 470 LYS B 203 CG CD CE NZ REMARK 470 LYS B 215 CG CD CE NZ REMARK 470 GLU C 33 CG CD OE1 OE2 REMARK 470 LYS C 36 CG CD CE NZ REMARK 470 LYS C 38 CG CD CE NZ REMARK 470 ASP C 39 CG OD1 OD2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 GLU C 64 CG CD OE1 OE2 REMARK 470 GLU C 95 CG CD OE1 OE2 REMARK 470 LYS C 121 CG CD CE NZ REMARK 470 GLU C 165 CG CD OE1 OE2 REMARK 470 LYS C 203 CG CD CE NZ REMARK 470 GLU D 23 CG CD OE1 OE2 REMARK 470 GLU D 33 CG CD OE1 OE2 REMARK 470 LYS D 38 CG CD CE NZ REMARK 470 ASP D 39 CG OD1 OD2 REMARK 470 GLU D 46 CG CD OE1 OE2 REMARK 470 GLU D 64 CG CD OE1 OE2 REMARK 470 GLU D 95 CG CD OE1 OE2 REMARK 470 GLU D 165 CG CD OE1 OE2 REMARK 470 LYS D 215 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N TRP B 238 OE1 GLN C 235 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 12 -125.28 52.64 REMARK 500 THR A 131 -110.67 -108.70 REMARK 500 LEU A 142 41.08 -142.89 REMARK 500 GLU A 181 -112.90 57.59 REMARK 500 PHE A 186 -62.88 91.09 REMARK 500 CYS A 229 62.03 -152.05 REMARK 500 ASN B 8 47.12 36.61 REMARK 500 PHE B 12 -119.84 50.07 REMARK 500 THR B 131 -113.15 -108.58 REMARK 500 LEU B 142 36.20 -140.24 REMARK 500 GLU B 181 -108.09 56.84 REMARK 500 TYR B 185 85.79 -68.37 REMARK 500 PHE B 186 -56.68 85.58 REMARK 500 CYS B 229 56.29 -146.63 REMARK 500 PHE C 12 -123.81 48.90 REMARK 500 GLN C 105 -51.61 -123.33 REMARK 500 THR C 131 -113.68 -109.20 REMARK 500 GLU C 181 -109.80 56.90 REMARK 500 TYR C 185 85.68 -68.10 REMARK 500 PHE C 186 -56.87 87.42 REMARK 500 CYS C 229 59.09 -151.68 REMARK 500 PHE D 12 -122.77 56.48 REMARK 500 ASP D 32 144.14 -171.87 REMARK 500 GLN D 105 -53.10 -123.21 REMARK 500 SER D 124 144.49 -170.91 REMARK 500 THR D 131 -107.96 -110.30 REMARK 500 GLU D 181 -109.72 58.73 REMARK 500 PHE D 186 -56.75 88.49 REMARK 500 CYS D 229 57.32 -150.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR C 185 0.06 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RPN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RPN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RPN C 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RPN D 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PWX RELATED DB: PDB REMARK 900 HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH BROMIDE REMARK 900 RELATED ID: 1PWZ RELATED DB: PDB REMARK 900 HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH (R)-STYRENE OXIDE AND REMARK 900 CHLORIDE DBREF 1PX0 A 1 254 UNP Q93D82 Q93D82_9RHIZ 1 254 DBREF 1PX0 B 1 254 UNP Q93D82 Q93D82_9RHIZ 1 254 DBREF 1PX0 C 1 254 UNP Q93D82 Q93D82_9RHIZ 1 254 DBREF 1PX0 D 1 254 UNP Q93D82 Q93D82_9RHIZ 1 254 SEQRES 1 A 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 A 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 A 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 A 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 A 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 A 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 A 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 A 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 A 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 A 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 A 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 A 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 A 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 A 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 A 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 A 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 A 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 A 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 A 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 A 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 B 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 B 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 B 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 B 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 B 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 B 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 B 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 B 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 B 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 B 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 B 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 B 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 B 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 B 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 B 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 B 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 B 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 B 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 B 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 B 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 C 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 C 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 C 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 C 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 C 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 C 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 C 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 C 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 C 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 C 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 C 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 C 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 C 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 C 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 C 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 C 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 C 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 C 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 C 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 C 254 ARG TRP PRO GLY MET PRO GLU SEQRES 1 D 254 MET SER THR ALA ILE VAL THR ASN VAL LYS HIS PHE GLY SEQRES 2 D 254 GLY MET GLY SER ALA LEU ARG LEU SER GLU ALA GLY HIS SEQRES 3 D 254 THR VAL ALA CYS HIS ASP GLU SER PHE LYS GLN LYS ASP SEQRES 4 D 254 GLU LEU GLU ALA PHE ALA GLU THR TYR PRO GLN LEU LYS SEQRES 5 D 254 PRO MET SER GLU GLN GLU PRO ALA GLU LEU ILE GLU ALA SEQRES 6 D 254 VAL THR SER ALA TYR GLY GLN VAL ASP VAL LEU VAL SER SEQRES 7 D 254 ASN ASP ILE PHE ALA PRO GLU PHE GLN PRO ILE ASP LYS SEQRES 8 D 254 TYR ALA VAL GLU ASP TYR ARG GLY ALA VAL GLU ALA LEU SEQRES 9 D 254 GLN ILE ARG PRO PHE ALA LEU VAL ASN ALA VAL ALA SER SEQRES 10 D 254 GLN MET LYS LYS ARG LYS SER GLY HIS ILE ILE PHE ILE SEQRES 11 D 254 THR SER ALA THR PRO PHE GLY PRO TRP LYS GLU LEU SER SEQRES 12 D 254 THR TYR THR SER ALA ARG ALA GLY ALA CYS THR LEU ALA SEQRES 13 D 254 ASN ALA LEU SER LYS GLU LEU GLY GLU TYR ASN ILE PRO SEQRES 14 D 254 VAL PHE ALA ILE GLY PRO ASN TYR LEU HIS SER GLU ASP SEQRES 15 D 254 SER PRO TYR PHE TYR PRO THR GLU PRO TRP LYS THR ASN SEQRES 16 D 254 PRO GLU HIS VAL ALA HIS VAL LYS LYS VAL THR ALA LEU SEQRES 17 D 254 GLN ARG LEU GLY THR GLN LYS GLU LEU GLY GLU LEU VAL SEQRES 18 D 254 ALA PHE LEU ALA SER GLY SER CYS ASP TYR LEU THR GLY SEQRES 19 D 254 GLN VAL PHE TRP LEU ALA GLY GLY PHE PRO MET ILE GLU SEQRES 20 D 254 ARG TRP PRO GLY MET PRO GLU HET RPN A1001 15 HET RPN B1002 15 HET RPN C1003 15 HET RPN D1004 15 HETNAM RPN (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL FORMUL 5 RPN 4(C8 H8 N4 O3) FORMUL 9 HOH *902(H2 O) HELIX 1 1 GLY A 13 ALA A 24 1 12 HELIX 2 2 ASP A 32 LYS A 36 5 5 HELIX 3 3 GLN A 37 TYR A 48 1 12 HELIX 4 4 GLU A 58 GLY A 71 1 14 HELIX 5 5 ALA A 93 GLN A 105 1 13 HELIX 6 6 GLN A 105 LYS A 123 1 19 HELIX 7 7 ALA A 133 GLY A 137 5 5 HELIX 8 8 LEU A 142 GLY A 164 1 23 HELIX 9 9 GLU A 165 ASN A 167 5 3 HELIX 10 10 PRO A 188 LYS A 193 1 6 HELIX 11 11 ASN A 195 THR A 206 1 12 HELIX 12 12 THR A 213 SER A 226 1 14 HELIX 13 13 CYS A 229 THR A 233 5 5 HELIX 14 14 GLY B 13 ALA B 24 1 12 HELIX 15 15 ASP B 32 LYS B 36 5 5 HELIX 16 16 GLN B 37 TYR B 48 1 12 HELIX 17 17 GLU B 58 GLY B 71 1 14 HELIX 18 18 PRO B 88 TYR B 92 5 5 HELIX 19 19 ALA B 93 GLN B 105 1 13 HELIX 20 20 GLN B 105 LYS B 123 1 19 HELIX 21 21 ALA B 133 GLY B 137 5 5 HELIX 22 22 LEU B 142 GLY B 164 1 23 HELIX 23 23 GLU B 165 ASN B 167 5 3 HELIX 24 24 PRO B 188 LYS B 193 1 6 HELIX 25 25 ASN B 195 THR B 206 1 12 HELIX 26 26 THR B 213 SER B 226 1 14 HELIX 27 27 CYS B 229 THR B 233 5 5 HELIX 28 28 GLY C 13 ALA C 24 1 12 HELIX 29 29 ASP C 32 LYS C 36 5 5 HELIX 30 30 GLN C 37 TYR C 48 1 12 HELIX 31 31 GLU C 58 GLY C 71 1 14 HELIX 32 32 ALA C 93 GLN C 105 1 13 HELIX 33 33 GLN C 105 LYS C 123 1 19 HELIX 34 34 ALA C 133 GLY C 137 5 5 HELIX 35 35 LEU C 142 GLY C 164 1 23 HELIX 36 36 GLU C 165 ASN C 167 5 3 HELIX 37 37 PRO C 188 LYS C 193 1 6 HELIX 38 38 ASN C 195 THR C 206 1 12 HELIX 39 39 THR C 213 SER C 226 1 14 HELIX 40 40 CYS C 229 THR C 233 5 5 HELIX 41 41 GLY D 13 ALA D 24 1 12 HELIX 42 42 ASP D 32 LYS D 36 5 5 HELIX 43 43 GLN D 37 TYR D 48 1 12 HELIX 44 44 GLU D 58 GLY D 71 1 14 HELIX 45 45 PRO D 88 TYR D 92 5 5 HELIX 46 46 ALA D 93 GLN D 105 1 13 HELIX 47 47 GLN D 105 LYS D 123 1 19 HELIX 48 48 ALA D 133 GLY D 137 5 5 HELIX 49 49 LEU D 142 GLY D 164 1 23 HELIX 50 50 GLU D 165 ASN D 167 5 3 HELIX 51 51 PRO D 188 LYS D 193 1 6 HELIX 52 52 ASN D 195 THR D 206 1 12 HELIX 53 53 THR D 213 SER D 226 1 14 HELIX 54 54 CYS D 229 THR D 233 5 5 SHEET 1 A 7 LYS A 52 PRO A 53 0 SHEET 2 A 7 THR A 27 CYS A 30 1 N CYS A 30 O LYS A 52 SHEET 3 A 7 THR A 3 VAL A 6 1 N ALA A 4 O THR A 27 SHEET 4 A 7 VAL A 75 ASN A 79 1 O VAL A 77 N ILE A 5 SHEET 5 A 7 HIS A 126 ILE A 130 1 O ILE A 128 N LEU A 76 SHEET 6 A 7 VAL A 170 PRO A 175 1 O ILE A 173 N PHE A 129 SHEET 7 A 7 VAL A 236 LEU A 239 1 O PHE A 237 N GLY A 174 SHEET 1 B 7 LEU B 51 PRO B 53 0 SHEET 2 B 7 THR B 27 CYS B 30 1 N VAL B 28 O LYS B 52 SHEET 3 B 7 THR B 3 VAL B 6 1 N ALA B 4 O THR B 27 SHEET 4 B 7 VAL B 75 ASN B 79 1 O VAL B 77 N ILE B 5 SHEET 5 B 7 HIS B 126 ILE B 130 1 O ILE B 128 N LEU B 76 SHEET 6 B 7 VAL B 170 PRO B 175 1 O ILE B 173 N PHE B 129 SHEET 7 B 7 VAL B 236 LEU B 239 1 O PHE B 237 N GLY B 174 SHEET 1 C 7 LYS C 52 PRO C 53 0 SHEET 2 C 7 THR C 27 CYS C 30 1 N CYS C 30 O LYS C 52 SHEET 3 C 7 THR C 3 VAL C 6 1 N ALA C 4 O THR C 27 SHEET 4 C 7 VAL C 75 ASN C 79 1 O VAL C 77 N ILE C 5 SHEET 5 C 7 HIS C 126 ILE C 130 1 O ILE C 130 N SER C 78 SHEET 6 C 7 VAL C 170 PRO C 175 1 O ILE C 173 N PHE C 129 SHEET 7 C 7 VAL C 236 LEU C 239 1 O PHE C 237 N GLY C 174 SHEET 1 D 7 LYS D 52 PRO D 53 0 SHEET 2 D 7 THR D 27 CYS D 30 1 N CYS D 30 O LYS D 52 SHEET 3 D 7 THR D 3 VAL D 6 1 N ALA D 4 O THR D 27 SHEET 4 D 7 VAL D 75 ASN D 79 1 O VAL D 77 N ILE D 5 SHEET 5 D 7 HIS D 126 ILE D 130 1 O ILE D 128 N LEU D 76 SHEET 6 D 7 VAL D 170 PRO D 175 1 O ILE D 173 N PHE D 129 SHEET 7 D 7 VAL D 236 LEU D 239 1 O PHE D 237 N GLY D 174 CISPEP 1 GLU A 190 PRO A 191 0 1.61 CISPEP 2 PHE A 243 PRO A 244 0 0.18 CISPEP 3 GLU B 190 PRO B 191 0 0.78 CISPEP 4 PHE B 243 PRO B 244 0 0.14 CISPEP 5 GLU C 190 PRO C 191 0 0.26 CISPEP 6 PHE C 243 PRO C 244 0 0.85 CISPEP 7 GLU D 190 PRO D 191 0 0.06 CISPEP 8 PHE D 243 PRO D 244 0 0.62 SITE 1 AC1 12 PHE A 86 SER A 132 TRP A 139 TYR A 145 SITE 2 AC1 12 ASN A 176 TYR A 177 LEU A 178 PHE A 186 SITE 3 AC1 12 TYR A 187 HOH A1019 HOH A1194 TRP C 249 SITE 1 AC2 12 PHE B 12 PRO B 84 PHE B 86 SER B 132 SITE 2 AC2 12 TRP B 139 TYR B 145 ASN B 176 LEU B 178 SITE 3 AC2 12 PHE B 186 TYR B 187 HOH B1028 TRP D 249 SITE 1 AC3 13 TRP A 249 PHE C 12 PRO C 84 PHE C 86 SITE 2 AC3 13 SER C 132 TRP C 139 TYR C 145 PRO C 175 SITE 3 AC3 13 ASN C 176 TYR C 177 LEU C 178 PHE C 186 SITE 4 AC3 13 TYR C 187 SITE 1 AC4 12 TRP B 249 PHE D 12 PHE D 86 SER D 132 SITE 2 AC4 12 THR D 134 TRP D 139 TYR D 145 ASN D 176 SITE 3 AC4 12 TYR D 177 LEU D 178 PHE D 186 TYR D 187 CRYST1 146.703 71.843 97.310 90.00 92.82 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006816 0.000000 0.000336 0.00000 SCALE2 0.000000 0.013919 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010289 0.00000