HEADER TRANSFERASE 04-JUL-03 1PXG TITLE CRYSTAL STRUCTURE OF THE MUTATED TRNA-GUANINE TRANSGLYCOSYLASE (TGT) TITLE 2 D280E COMPLEXED WITH PREQ1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRNA-GUANINE TRANSGLYCOSYLASE, GUANINE INSERTION ENZYME; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS; SOURCE 3 ORGANISM_TAXID: 542; SOURCE 4 GENE: TGT; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETZM4 KEYWDS TIM-BARREL, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.D.KITTENDORF,T.SGRAJA,K.REUTER,G.KLEBE,G.A.GARCIA REVDAT 8 16-AUG-23 1PXG 1 REMARK REVDAT 7 27-OCT-21 1PXG 1 SEQADV REVDAT 6 19-AUG-20 1PXG 1 REMARK LINK REVDAT 5 11-OCT-17 1PXG 1 REMARK REVDAT 4 13-JUL-11 1PXG 1 VERSN REVDAT 3 24-FEB-09 1PXG 1 VERSN REVDAT 2 04-NOV-03 1PXG 1 JRNL REVDAT 1 09-SEP-03 1PXG 0 JRNL AUTH J.D.KITTENDORF,T.SGRAJA,K.REUTER,G.KLEBE,G.A.GARCIA JRNL TITL AN ESSENTIAL ROLE FOR ASPARTATE 264 IN CATALYSIS BY JRNL TITL 2 TRNA-GUANINE TRANSGLYCOSYLASE FROM ESCHERICHIA COLI. JRNL REF J.BIOL.CHEM. V. 278 42369 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12909636 JRNL DOI 10.1074/JBC.M304323200 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.161 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.159 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 2088 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 41592 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : 0.157 REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : 38523 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2815 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 3169.4 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 2736.9 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 8 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 12823 REMARK 3 NUMBER OF RESTRAINTS : 11936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : 0.027 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.023 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.047 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.053 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.017 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.000 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.064 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: ANISOTROPIC SCALING APPLIED BY THE REMARK 3 METHOD OF PARKIN, MOEZZI & HOPE, J.APPL.CRYST.28(1995)53-56 REMARK 4 REMARK 4 1PXG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019667. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : R-AXIS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42492 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : 0.06700 REMARK 200 FOR THE DATA SET : 24.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.6 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.25300 REMARK 200 R SYM FOR SHELL (I) : 0.25300 REMARK 200 FOR SHELL : 6.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: PDB ENTRY 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, DIMETHYLSULFOXIDE, TRIS REMARK 280 HYDROCHLORIDE, DTT, PREQ1, PH 8.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.64000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.47000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.64000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.47000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 83.79590 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.79992 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 708 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 ASP A 10 REMARK 465 LEU A 283 REMARK 465 PRO A 284 REMARK 465 THR A 285 REMARK 465 ARG A 286 REMARK 465 SER A 287 REMARK 465 GLY A 288 REMARK 465 ARG A 289 REMARK 465 ASN A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 77 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 LEU A 114 CG CD1 CD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 11 CD - NE - CZ ANGL. DEV. = 8.7 DEGREES REMARK 500 ARG A 21 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG A 21 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 34 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 189 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 TYR A 258 CB - CG - CD2 ANGL. DEV. = -4.5 DEGREES REMARK 500 TYR A 258 CB - CG - CD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 GLY A 263 CA - C - O ANGL. DEV. = -12.7 DEGREES REMARK 500 ASN A 301 N - CA - CB ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 362 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 129 -148.15 -111.15 REMARK 500 SER A 205 -136.40 51.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 772 DISTANCE = 6.07 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 400 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 105.3 REMARK 620 3 CYS A 323 SG 116.2 115.6 REMARK 620 4 HIS A 349 ND1 104.1 114.5 100.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRF A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1006 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1008 DBREF 1PXG A 2 383 UNP P28720 TGT_ZYMMO 1 382 SEQADV 1PXG GLU A 280 UNP P28720 ASP 279 ENGINEERED MUTATION SEQRES 1 A 382 VAL GLU ALA THR ALA GLN GLU THR ASP ARG PRO ARG PHE SEQRES 2 A 382 SER PHE SER ILE ALA ALA ARG GLU GLY LYS ALA ARG THR SEQRES 3 A 382 GLY THR ILE GLU MET LYS ARG GLY VAL ILE ARG THR PRO SEQRES 4 A 382 ALA PHE MET PRO VAL GLY THR ALA ALA THR VAL LYS ALA SEQRES 5 A 382 LEU LYS PRO GLU THR VAL ARG ALA THR GLY ALA ASP ILE SEQRES 6 A 382 ILE LEU GLY ASN THR TYR HIS LEU MET LEU ARG PRO GLY SEQRES 7 A 382 ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU HIS SER PHE SEQRES 8 A 382 MET GLY TRP ASP ARG PRO ILE LEU THR ASP SER GLY GLY SEQRES 9 A 382 TYR GLN VAL MET SER LEU SER SER LEU THR LYS GLN SER SEQRES 10 A 382 GLU GLU GLY VAL THR PHE LYS SER HIS LEU ASP GLY SER SEQRES 11 A 382 ARG HIS MET LEU SER PRO GLU ARG SER ILE GLU ILE GLN SEQRES 12 A 382 HIS LEU LEU GLY SER ASP ILE VAL MET ALA PHE ASP GLU SEQRES 13 A 382 CYS THR PRO TYR PRO ALA THR PRO SER ARG ALA ALA SER SEQRES 14 A 382 SER MET GLU ARG SER MET ARG TRP ALA LYS ARG SER ARG SEQRES 15 A 382 ASP ALA PHE ASP SER ARG LYS GLU GLN ALA GLU ASN ALA SEQRES 16 A 382 ALA LEU PHE GLY ILE GLN GLN GLY SER VAL PHE GLU ASN SEQRES 17 A 382 LEU ARG GLN GLN SER ALA ASP ALA LEU ALA GLU ILE GLY SEQRES 18 A 382 PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA VAL GLY GLU SEQRES 19 A 382 GLY GLN ASP GLU MET PHE ARG VAL LEU ASP PHE SER VAL SEQRES 20 A 382 PRO MET LEU PRO ASP ASP LYS PRO HIS TYR LEU MET GLY SEQRES 21 A 382 VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA VAL GLU ARG SEQRES 22 A 382 GLY ILE ASP MET PHE GLU CYS VAL LEU PRO THR ARG SER SEQRES 23 A 382 GLY ARG ASN GLY GLN ALA PHE THR TRP ASP GLY PRO ILE SEQRES 24 A 382 ASN ILE ARG ASN ALA ARG PHE SER GLU ASP LEU LYS PRO SEQRES 25 A 382 LEU ASP SER GLU CYS HIS CYS ALA VAL CYS GLN LYS TRP SEQRES 26 A 382 SER ARG ALA TYR ILE HIS HIS LEU ILE ARG ALA GLY GLU SEQRES 27 A 382 ILE LEU GLY ALA MET LEU MET THR GLU HIS ASN ILE ALA SEQRES 28 A 382 PHE TYR GLN GLN LEU MET GLN LYS ILE ARG ASP SER ILE SEQRES 29 A 382 SER GLU GLY ARG PHE SER GLN PHE ALA GLN ASP PHE ARG SEQRES 30 A 382 ALA ARG TYR PHE ALA HET ZN A 400 1 HET PRF A 401 13 HET GOL A1001 6 HET GOL A1002 6 HET GOL A1003 6 HET GOL A1004 6 HET GOL A1005 6 HET GOL A1006 6 HET GOL A1007 6 HET GOL A1008 6 HETNAM ZN ZINC ION HETNAM PRF 7-DEAZA-7-AMINOMETHYL-GUANINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 ZN ZN 2+ FORMUL 3 PRF C7 H9 N5 O FORMUL 4 GOL 8(C3 H8 O3) FORMUL 12 HOH *290(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 THR A 71 LEU A 76 1 6 HELIX 3 3 GLY A 79 ALA A 84 1 6 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 SER A 112 1 9 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 SER A 188 1 25 HELIX 8 8 GLU A 191 ALA A 196 1 6 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 GLU A 273 1 10 HELIX 13 13 ASN A 304 SER A 308 5 5 HELIX 14 14 CYS A 320 TRP A 326 1 7 HELIX 15 15 SER A 327 ALA A 337 1 11 HELIX 16 16 GLU A 339 GLU A 367 1 29 HELIX 17 17 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 2 ALA A 41 MET A 43 0 SHEET 2 B 2 MET A 278 GLU A 280 1 O PHE A 279 N MET A 43 SHEET 1 C 7 VAL A 45 GLY A 46 0 SHEET 2 C 7 ILE A 67 GLY A 69 1 O LEU A 68 N GLY A 46 SHEET 3 C 7 ILE A 99 THR A 101 1 O LEU A 100 N GLY A 69 SHEET 4 C 7 ILE A 151 MET A 153 1 O ILE A 151 N THR A 101 SHEET 5 C 7 ALA A 197 GLN A 202 1 O ALA A 197 N VAL A 152 SHEET 6 C 7 GLY A 225 VAL A 228 1 O ALA A 227 N GLY A 200 SHEET 7 C 7 HIS A 257 LEU A 259 1 O TYR A 258 N VAL A 228 SHEET 1 D 2 VAL A 122 THR A 123 0 SHEET 2 D 2 MET A 134 LEU A 135 -1 O LEU A 135 N VAL A 122 SHEET 1 E 2 GLN A 292 ALA A 293 0 SHEET 2 E 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 400 1555 1555 2.31 LINK SG CYS A 320 ZN ZN A 400 1555 1555 2.30 LINK SG CYS A 323 ZN ZN A 400 1555 1555 2.31 LINK ND1 HIS A 349 ZN ZN A 400 1555 1555 2.13 CISPEP 1 THR A 39 PRO A 40 0 -2.94 CISPEP 2 ARG A 77 PRO A 78 0 9.93 CISPEP 3 TYR A 161 PRO A 162 0 2.66 SITE 1 AC1 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC2 10 TYR A 106 ASP A 156 CYS A 158 GLN A 203 SITE 2 AC2 10 GLY A 229 GLY A 230 LEU A 231 VAL A 233 SITE 3 AC2 10 MET A 260 HOH A 516 SITE 1 AC3 6 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC3 6 ASP A 96 ARG A 97 SITE 1 AC4 9 ARG A 11 MET A 32 LYS A 33 ARG A 34 SITE 2 AC4 9 GLY A 35 VAL A 36 HOH A 658 HOH A 705 SITE 3 AC4 9 HOH A 761 SITE 1 AC5 6 PHE A 16 SER A 17 ILE A 18 ASP A 254 SITE 2 AC5 6 HOH A 691 HOH A 729 SITE 1 AC6 6 PRO A 78 HIS A 333 ARG A 336 ALA A 337 SITE 2 AC6 6 HOH A 640 HOH A 743 SITE 1 AC7 6 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC7 6 HOH A 521 HOH A 773 SITE 1 AC8 8 GLN A 117 SER A 118 ARG A 174 PRO A 252 SITE 2 AC8 8 ASP A 254 LYS A 255 HOH A 783 HOH A 785 SITE 1 AC9 6 ALA A 61 THR A 62 CYS A 320 ALA A 321 SITE 2 AC9 6 GLU A 348 HOH A 772 SITE 1 BC1 3 ARG A 38 ARG A 60 GLY A 63 CRYST1 91.280 64.940 70.200 90.00 96.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010955 0.000000 0.001175 0.00000 SCALE2 0.000000 0.015399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014327 0.00000