HEADER HYDROLASE 09-JUL-03 1PYV TITLE NMR SOLUTION STRUCTURE OF THE MITOCHONDRIAL F1B PRESEQUENCE PEPTIDE TITLE 2 FROM NICOTIANA PLUMBAGINIFOLIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: F1B PRESEQUENCE PEPTIDE; COMPND 5 EC: 3.6.3.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NICOTIANA PLUMBAGINIFOLIA; SOURCE 3 ORGANISM_COMMON: CURLED-LEAVED TOBACCO; SOURCE 4 ORGANISM_TAXID: 4092; SOURCE 5 GENE: ATPB OR ATP2-1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21D KEYWDS HYDROLASE EXPDTA SOLUTION NMR NUMMDL 24 AUTHOR P.MOBERG,S.NILSSON,A.STAHL,A.C.ERIKSSON,E.GLASER,L.MALER REVDAT 3 02-MAR-22 1PYV 1 REMARK REVDAT 2 24-FEB-09 1PYV 1 VERSN REVDAT 1 06-APR-04 1PYV 0 JRNL AUTH P.MOBERG,S.NILSSON,A.STAHL,A.C.ERIKSSON,E.GLASER,L.MALER JRNL TITL NMR SOLUTION STRUCTURE OF THE MITOCHONDRIAL F1BETA JRNL TITL 2 PRESEQUENCE FROM NICOTIANA PLUMBAGINIFOLIA JRNL REF J.MOL.BIOL. V. 336 1129 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15037074 JRNL DOI 10.1016/J.JMB.2004.01.006 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : FELIX 2000.1, DYANA 1.5 REMARK 3 AUTHORS : ACCELRYS (FELIX), GUNTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE IS BASED ON A TOTAL OF 539 RESTRAINTS: REMARK 3 518 NOE-DERIVED DISTANCE CONSTRAINTS, AND 21 PHI DIHEDRAL ANGLE REMARK 3 RESTRAINTS FROM J-COUPLINGS. REMARK 4 REMARK 4 1PYV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019706. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 318 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 300 MM SDS REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1 MM F1B PRESEQUENCE, 300 MM REMARK 210 SODIUM DODECYL PHOSPHATE, 30 UL REMARK 210 D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : VARIAN; BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 24 REMARK 210 CONFORMERS, SELECTION CRITERIA : COMBINATION OF LOWEST ENERGY AND REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-24 REMARK 465 RES C SSSEQI REMARK 465 MET A 0 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ALA A 7 H ARG A 11 1.52 REMARK 500 O ALA A 14 H GLY A 17 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 3 -62.03 70.49 REMARK 500 1 ILE A 21 -31.43 166.84 REMARK 500 1 SER A 24 -88.48 -44.72 REMARK 500 1 SER A 28 52.55 -150.82 REMARK 500 1 SER A 32 34.12 74.57 REMARK 500 1 ARG A 35 53.86 -92.68 REMARK 500 1 ALA A 36 -95.47 -158.36 REMARK 500 1 SER A 37 -68.63 72.77 REMARK 500 2 SER A 2 -174.71 163.08 REMARK 500 2 ARG A 4 -39.21 -38.95 REMARK 500 2 LEU A 20 41.35 -90.33 REMARK 500 2 ILE A 21 -45.01 -158.03 REMARK 500 2 SER A 24 -92.42 -50.13 REMARK 500 2 SER A 34 -38.50 -39.58 REMARK 500 2 ARG A 35 71.67 -117.08 REMARK 500 2 SER A 38 -56.18 82.15 REMARK 500 3 SER A 28 61.13 -159.77 REMARK 500 3 LYS A 31 -55.87 179.14 REMARK 500 3 ARG A 35 56.97 -155.03 REMARK 500 3 ALA A 36 -74.78 -105.52 REMARK 500 3 SER A 37 80.63 54.10 REMARK 500 3 SER A 38 -56.90 177.38 REMARK 500 3 ARG A 39 30.94 -168.21 REMARK 500 4 ARG A 16 -92.52 -155.77 REMARK 500 4 ARG A 23 -45.80 -141.10 REMARK 500 4 SER A 24 -94.89 -51.55 REMARK 500 4 SER A 28 68.14 -161.24 REMARK 500 4 LYS A 31 -61.47 169.07 REMARK 500 4 ARG A 35 50.05 -158.01 REMARK 500 4 ALA A 36 -100.30 -146.42 REMARK 500 4 SER A 37 -171.71 75.25 REMARK 500 4 SER A 38 -64.88 78.36 REMARK 500 5 SER A 2 114.45 -179.73 REMARK 500 5 ARG A 3 -47.36 -139.19 REMARK 500 5 ARG A 16 85.06 38.83 REMARK 500 5 SER A 22 -85.80 -39.23 REMARK 500 5 ARG A 23 24.30 -142.55 REMARK 500 5 SER A 24 -81.22 -84.70 REMARK 500 5 ALA A 33 29.78 46.53 REMARK 500 5 SER A 37 -41.64 -168.91 REMARK 500 6 SER A 28 68.02 174.69 REMARK 500 6 LYS A 31 -57.40 164.29 REMARK 500 6 ARG A 35 -44.61 -155.15 REMARK 500 6 ALA A 36 -91.83 -47.81 REMARK 500 6 SER A 37 151.90 80.46 REMARK 500 6 SER A 38 -70.67 83.36 REMARK 500 7 ARG A 3 -61.61 75.51 REMARK 500 7 LEU A 5 -75.43 -57.48 REMARK 500 7 ARG A 16 -98.29 -163.77 REMARK 500 7 SER A 24 -78.50 -50.16 REMARK 500 REMARK 500 THIS ENTRY HAS 193 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1PYV A 0 53 UNP P17614 ATPBM_NICPL 1 54 SEQRES 1 A 54 MET ALA SER ARG ARG LEU LEU ALA SER LEU LEU ARG GLN SEQRES 2 A 54 SER ALA GLN ARG GLY GLY GLY LEU ILE SER ARG SER LEU SEQRES 3 A 54 GLY ASN SER ILE PRO LYS SER ALA SER ARG ALA SER SER SEQRES 4 A 54 ARG ALA SER PRO LYS GLY PHE LEU LEU ASN ARG ALA VAL SEQRES 5 A 54 GLN TYR HELIX 1 1 ARG A 3 GLN A 15 1 13 HELIX 2 2 SER A 24 ILE A 29 5 6 HELIX 3 3 SER A 41 TYR A 53 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1