HEADER OXIDOREDUCTASE 16-JUL-03 1Q0M TITLE CRYSTAL STRUCTURE OF NI-CONTAINING SUPEROXIDE DISMUTASE WITH NI- TITLE 2 LIGATION CORRESPONDING TO THE STATE AFTER FULL X-RAY-INDUCED TITLE 3 REDUCTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [NI]; COMPND 3 CHAIN: A, B, C, D, E, F; COMPND 4 SYNONYM: NICKEL-CONTAINING SUPEROXIDE DISMUTASE; NISOD; NI-CONTAINING COMPND 5 SUPEROXIDE DISMUTASE; COMPND 6 EC: 1.15.1.1; COMPND 7 OTHER_DETAILS: THE ASYMMETRIC UNIT CONTAINS ONE HEXAMER SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SEOULENSIS; SOURCE 3 ORGANISM_TAXID: 73044 KEYWDS HOMOHEXAMER OF FOUR-HELIX BUNDLES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR J.WUERGES,J.-W.LEE,Y.-I.YIM,H.-S.YIM,S.-O.KANG,K.DJINOVIC CARUGO REVDAT 4 14-FEB-24 1Q0M 1 REMARK LINK REVDAT 3 24-FEB-09 1Q0M 1 VERSN REVDAT 2 15-JUN-04 1Q0M 1 JRNL REVDAT 1 18-MAY-04 1Q0M 0 JRNL AUTH J.WUERGES,J.-W.LEE,Y.-I.YIM,H.-S.YIM,S.-O.KANG, JRNL AUTH 2 K.DJINOVIC CARUGO JRNL TITL CRYSTAL STRUCTURE OF NICKEL-CONTAINING SUPEROXIDE DISMUTASE JRNL TITL 2 REVEALS ANOTHER TYPE OF ACTIVE SITE JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 8569 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15173586 JRNL DOI 10.1073/PNAS.0308514101 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 108081 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.177 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5428 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 901 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.740 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.440 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.950 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.430 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.500 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q0M COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019766. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.25 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 108081 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 34.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.27600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, SODIUM ACETATE PH REMARK 280 5.25, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.76600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.58800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.71400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.58800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.76600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.71400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 16050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -213.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 117.38 -168.11 REMARK 500 ASP B 10 118.18 -163.42 REMARK 500 ASP D 10 119.21 -166.73 REMARK 500 ASP E 10 118.91 -169.44 REMARK 500 ASP F 10 114.16 -161.25 REMARK 500 PRO F 11 -9.63 -59.15 REMARK 500 LYS F 116 57.71 -90.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 1 N REMARK 620 2 CYS A 2 N 82.1 REMARK 620 3 CYS A 2 SG 170.4 88.6 REMARK 620 4 CYS A 6 SG 93.1 169.7 96.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 1 N REMARK 620 2 CYS B 2 SG 172.1 REMARK 620 3 CYS B 2 N 81.4 90.9 REMARK 620 4 CYS B 6 SG 93.5 94.4 170.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 1 N REMARK 620 2 CYS C 2 SG 170.8 REMARK 620 3 CYS C 2 N 82.7 88.2 REMARK 620 4 CYS C 6 SG 92.0 97.1 169.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI D 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 1 N REMARK 620 2 CYS D 2 N 82.2 REMARK 620 3 CYS D 2 SG 169.7 87.9 REMARK 620 4 CYS D 6 SG 94.2 171.5 96.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI E 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS E 1 N REMARK 620 2 CYS E 2 N 82.2 REMARK 620 3 CYS E 2 SG 171.5 89.3 REMARK 620 4 CYS E 6 SG 93.0 170.2 95.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI F 118 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS F 1 N REMARK 620 2 CYS F 2 N 81.7 REMARK 620 3 CYS F 2 SG 171.2 89.5 REMARK 620 4 CYS F 6 SG 92.9 169.8 96.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI D 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI E 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI F 118 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 9001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 9002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 9003 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 9004 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 E 9005 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 F 9006 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 9007 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 9008 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY C 7001 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY D 7002 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY F 7003 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q0D RELATED DB: PDB REMARK 900 1Q0D CONTAINS THE RESTING ENZYME IN ANOTHER CRYSTAL FORM REMARK 900 RELATED ID: 1Q0F RELATED DB: PDB REMARK 900 1Q0F CONTAINS THE PARTIALLY X-RAY REDUCED ENZYME IN ANOTHER CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 1Q0G RELATED DB: PDB REMARK 900 1Q0G CONTAINS THE FULLY X-RAY REDUCED ENZYME IN ANOTHER CRYSTAL FORM REMARK 900 RELATED ID: 1Q0K RELATED DB: PDB REMARK 900 1Q0K CONTAINS THE THIOSULFATE-REDUCED ENZYME IN ANOTHER CRYSTAL FORM DBREF 1Q0M A 1 117 UNP P80734 SODN_STRSO 15 131 DBREF 1Q0M B 1 117 UNP P80734 SODN_STRSO 15 131 DBREF 1Q0M C 1 117 UNP P80734 SODN_STRSO 15 131 DBREF 1Q0M D 1 117 UNP P80734 SODN_STRSO 15 131 DBREF 1Q0M E 1 117 UNP P80734 SODN_STRSO 15 131 DBREF 1Q0M F 1 117 UNP P80734 SODN_STRSO 15 131 SEQRES 1 A 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 A 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 A 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 A 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 A 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 A 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 A 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 A 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 A 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 B 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 B 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 B 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 B 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 B 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 B 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 B 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 B 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 B 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 C 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 C 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 C 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 C 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 C 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 C 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 C 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 C 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 C 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 D 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 D 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 D 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 D 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 D 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 D 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 D 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 D 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 D 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 E 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 E 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 E 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 E 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 E 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 E 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 E 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 E 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 E 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA SEQRES 1 F 117 HIS CYS ASP LEU PRO CYS GLY VAL TYR ASP PRO ALA GLN SEQRES 2 F 117 ALA ARG ILE GLU ALA GLU SER VAL LYS ALA ILE GLN GLU SEQRES 3 F 117 LYS MET ALA ALA ASN ASP ASP LEU HIS PHE GLN ILE ARG SEQRES 4 F 117 ALA THR VAL ILE LYS GLU GLN ARG ALA GLU LEU ALA LYS SEQRES 5 F 117 HIS HIS LEU ASP VAL LEU TRP SER ASP TYR PHE LYS PRO SEQRES 6 F 117 PRO HIS PHE GLU SER TYR PRO GLU LEU HIS THR LEU VAL SEQRES 7 F 117 ASN GLU ALA VAL LYS ALA LEU SER ALA ALA LYS ALA SER SEQRES 8 F 117 THR ASP PRO ALA THR GLY GLN LYS ALA LEU ASP TYR ILE SEQRES 9 F 117 ALA GLN ILE ASP LYS ILE PHE TRP GLU THR LYS LYS ALA HET NI A 118 1 HET SO4 A9001 5 HET NI B 118 1 HET SO4 B9002 5 HET NI C 118 1 HET SO4 C9003 5 HET SO4 C9008 5 HET ACY C7001 4 HET NI D 118 1 HET SO4 D9004 5 HET SO4 D9007 5 HET ACY D7002 4 HET NI E 118 1 HET SO4 E9005 5 HET NI F 118 1 HET SO4 F9006 5 HET ACY F7003 4 HETNAM NI NICKEL (II) ION HETNAM SO4 SULFATE ION HETNAM ACY ACETIC ACID FORMUL 7 NI 6(NI 2+) FORMUL 8 SO4 8(O4 S 2-) FORMUL 14 ACY 3(C2 H4 O2) FORMUL 24 HOH *901(H2 O) HELIX 1 1 PRO A 11 ALA A 29 1 19 HELIX 2 2 ASP A 33 ASP A 61 1 29 HELIX 3 3 LYS A 64 TYR A 71 1 8 HELIX 4 4 GLU A 73 ALA A 90 1 18 HELIX 5 5 ASP A 93 ALA A 117 1 25 HELIX 6 6 PRO B 11 ALA B 29 1 19 HELIX 7 7 ASP B 33 ASP B 61 1 29 HELIX 8 8 LYS B 64 TYR B 71 1 8 HELIX 9 9 PRO B 72 ALA B 90 1 19 HELIX 10 10 ASP B 93 ALA B 117 1 25 HELIX 11 11 PRO C 11 ALA C 29 1 19 HELIX 12 12 ASP C 33 ASP C 61 1 29 HELIX 13 13 LYS C 64 TYR C 71 1 8 HELIX 14 14 GLU C 73 ALA C 90 1 18 HELIX 15 15 ASP C 93 ALA C 117 1 25 HELIX 16 16 PRO D 11 ASN D 31 1 21 HELIX 17 17 ASP D 33 ASP D 61 1 29 HELIX 18 18 LYS D 64 TYR D 71 1 8 HELIX 19 19 GLU D 73 ALA D 90 1 18 HELIX 20 20 ASP D 93 ALA D 117 1 25 HELIX 21 21 PRO E 11 ALA E 29 1 19 HELIX 22 22 ASP E 33 ASP E 61 1 29 HELIX 23 23 LYS E 64 TYR E 71 1 8 HELIX 24 24 GLU E 73 ALA E 90 1 18 HELIX 25 25 ASP E 93 ALA E 117 1 25 HELIX 26 26 PRO F 11 ALA F 30 1 20 HELIX 27 27 ASP F 33 TYR F 62 1 30 HELIX 28 28 LYS F 64 TYR F 71 1 8 HELIX 29 29 GLU F 73 ALA F 90 1 18 HELIX 30 30 ASP F 93 LYS F 116 1 24 LINK N HIS A 1 NI NI A 118 1555 1555 2.06 LINK N CYS A 2 NI NI A 118 1555 1555 1.95 LINK SG CYS A 2 NI NI A 118 1555 1555 2.22 LINK SG CYS A 6 NI NI A 118 1555 1555 2.19 LINK N HIS B 1 NI NI B 118 1555 1555 2.08 LINK SG CYS B 2 NI NI B 118 1555 1555 2.20 LINK N CYS B 2 NI NI B 118 1555 1555 1.92 LINK SG CYS B 6 NI NI B 118 1555 1555 2.19 LINK N HIS C 1 NI NI C 118 1555 1555 2.07 LINK SG CYS C 2 NI NI C 118 1555 1555 2.27 LINK N CYS C 2 NI NI C 118 1555 1555 1.93 LINK SG CYS C 6 NI NI C 118 1555 1555 2.18 LINK N HIS D 1 NI NI D 118 1555 1555 2.07 LINK N CYS D 2 NI NI D 118 1555 1555 1.96 LINK SG CYS D 2 NI NI D 118 1555 1555 2.23 LINK SG CYS D 6 NI NI D 118 1555 1555 2.16 LINK N HIS E 1 NI NI E 118 1555 1555 2.08 LINK N CYS E 2 NI NI E 118 1555 1555 1.94 LINK SG CYS E 2 NI NI E 118 1555 1555 2.26 LINK SG CYS E 6 NI NI E 118 1555 1555 2.20 LINK N HIS F 1 NI NI F 118 1555 1555 2.04 LINK N CYS F 2 NI NI F 118 1555 1555 1.94 LINK SG CYS F 2 NI NI F 118 1555 1555 2.24 LINK SG CYS F 6 NI NI F 118 1555 1555 2.17 CISPEP 1 LEU A 4 PRO A 5 0 1.47 CISPEP 2 LEU B 4 PRO B 5 0 -0.10 CISPEP 3 LEU C 4 PRO C 5 0 0.12 CISPEP 4 LEU D 4 PRO D 5 0 -0.11 CISPEP 5 LEU E 4 PRO E 5 0 0.23 CISPEP 6 LEU F 4 PRO F 5 0 0.22 SITE 1 AC1 4 HIS A 1 CYS A 2 ASP A 3 CYS A 6 SITE 1 AC2 4 HIS B 1 CYS B 2 ASP B 3 CYS B 6 SITE 1 AC3 4 HIS C 1 CYS C 2 ASP C 3 CYS C 6 SITE 1 AC4 4 HIS D 1 CYS D 2 ASP D 3 CYS D 6 SITE 1 AC5 4 HIS E 1 CYS E 2 ASP E 3 CYS E 6 SITE 1 AC6 4 HIS F 1 CYS F 2 ASP F 3 CYS F 6 SITE 1 AC7 5 PRO A 5 GLY A 7 TYR A 9 LYS A 64 SITE 2 AC7 5 HOH A9143 SITE 1 AC8 9 PRO B 5 GLY B 7 TYR B 9 ASP B 61 SITE 2 AC8 9 LYS B 64 HOH B9046 HOH B9060 HOH B9119 SITE 3 AC8 9 HOH B9151 SITE 1 AC9 8 PRO C 5 GLY C 7 TYR C 9 ASP C 61 SITE 2 AC9 8 LYS C 64 HOH C9083 HOH C9128 HOH C9137 SITE 1 BC1 6 PRO D 5 GLY D 7 TYR D 9 ASP D 61 SITE 2 BC1 6 LYS D 64 HOH D9063 SITE 1 BC2 7 PRO E 5 GLY E 7 TYR E 9 ASP E 61 SITE 2 BC2 7 LYS E 64 HOH E9079 HOH E9113 SITE 1 BC3 6 PRO F 5 GLY F 7 TYR F 9 LYS F 64 SITE 2 BC3 6 HOH F9076 HOH F9108 SITE 1 BC4 5 GLN A 46 GLN B 46 GLN D 46 HOH D9071 SITE 2 BC4 5 HOH D9077 SITE 1 BC5 4 GLN C 46 HOH C9068 GLN E 46 GLN F 46 SITE 1 BC6 6 GLU C 69 PRO D 65 PHE D 68 ASN E 79 SITE 2 BC6 6 HOH E9059 HOH E9074 SITE 1 BC7 6 THR B 76 ASN B 79 HOH B9043 PRO C 65 SITE 2 BC7 6 HIS C 75 GLU D 69 SITE 1 BC8 7 PRO B 65 PHE B 68 ASN C 79 LYS C 83 SITE 2 BC8 7 HOH C9025 HOH C9066 GLU F 69 CRYST1 65.532 119.428 121.176 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008252 0.00000