HEADER TRANSFERASE 21-JUL-03 1Q1K TITLE STRUCTURE OF ATP-PHOSPHORIBOSYLTRANSFERASE FROM E. COLI COMPLEXED WITH TITLE 2 PR-ATP CAVEAT 1Q1K PRT A 500 HAS WRONG CHIRALITY AT ATOM C3' PRT A 500 HAS CAVEAT 2 1Q1K WRONG CHIRALITY AT ATOM C1' PRT A 500 HAS WRONG CHIRALITY CAVEAT 3 1Q1K AT ATOM C11 PRT A 500 HAS WRONG CHIRALITY AT ATOM C14 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATP PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.4.2.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: HISG; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B824(DE3)PLYSS; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTB361 KEYWDS HISTIDINE BIOSYNTHESIS, PRPP BINDING, PR-ATP INHIBITION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR B.LOHKAMP,G.MCDERMOTT,J.R.COGGINS,A.J.LAPTHORN REVDAT 5 16-AUG-23 1Q1K 1 REMARK LINK REVDAT 4 03-MAY-17 1Q1K 1 HET REVDAT 3 13-JUL-11 1Q1K 1 VERSN REVDAT 2 24-FEB-09 1Q1K 1 VERSN REVDAT 1 02-MAR-04 1Q1K 0 JRNL AUTH B.LOHKAMP,G.MCDERMOTT,S.A.CAMPBELL,J.R.COGGINS,A.J.LAPTHORN JRNL TITL THE STRUCTURE OF ESCHERICHIA COLI JRNL TITL 2 ATP-PHOSPHORIBOSYLTRANSFERASE: IDENTIFICATION OF SUBSTRATE JRNL TITL 3 BINDING SITES AND MODE OF AMP INHIBITION JRNL REF J.MOL.BIOL. V. 336 131 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14741209 JRNL DOI 10.1016/J.JMB.2003.12.020 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 7834 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.215 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.100 REMARK 3 FREE R VALUE TEST SET COUNT : 687 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3420 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.5560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2187 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 64 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.04000 REMARK 3 B22 (A**2) : 3.04000 REMARK 3 B33 (A**2) : -4.56000 REMARK 3 B12 (A**2) : 1.52000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.435 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.317 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.014 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2255 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3049 ; 2.018 ; 2.010 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 286 ; 6.807 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 366 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1639 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1000 ; 0.264 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 91 ; 0.147 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 50 ; 0.242 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.257 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1429 ; 0.736 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2282 ; 1.424 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 826 ; 2.255 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 767 ; 3.842 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 102 REMARK 3 RESIDUE RANGE : A 192 A 225 REMARK 3 RESIDUE RANGE : A 410 A 411 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5619 28.9429 55.2993 REMARK 3 T TENSOR REMARK 3 T11: 0.1572 T22: 0.3670 REMARK 3 T33: 0.2753 T12: 0.1577 REMARK 3 T13: -0.0052 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 5.8823 L22: 5.2731 REMARK 3 L33: 5.9859 L12: -1.1762 REMARK 3 L13: 2.3102 L23: -0.0244 REMARK 3 S TENSOR REMARK 3 S11: 0.1142 S12: -0.4007 S13: -0.5976 REMARK 3 S21: 0.6006 S22: 0.2739 S23: 0.2980 REMARK 3 S31: 0.8143 S32: 0.3694 S33: -0.3881 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 103 A 191 REMARK 3 RESIDUE RANGE : A 500 A 500 REMARK 3 ORIGIN FOR THE GROUP (A): 36.6871 55.4235 44.9857 REMARK 3 T TENSOR REMARK 3 T11: 0.1483 T22: 0.2518 REMARK 3 T33: 0.3967 T12: -0.0796 REMARK 3 T13: 0.1112 T23: -0.0691 REMARK 3 L TENSOR REMARK 3 L11: 2.6445 L22: 2.8061 REMARK 3 L33: 8.2026 L12: -1.0763 REMARK 3 L13: -2.2261 L23: 1.3140 REMARK 3 S TENSOR REMARK 3 S11: 0.1089 S12: -0.0151 S13: 0.4922 REMARK 3 S21: -0.2391 S22: 0.4939 S23: -0.3377 REMARK 3 S31: -1.0138 S32: 0.3868 S33: -0.6028 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 226 A 299 REMARK 3 ORIGIN FOR THE GROUP (A): 57.9718 47.6345 79.1450 REMARK 3 T TENSOR REMARK 3 T11: 0.5444 T22: 0.8776 REMARK 3 T33: 0.1268 T12: -0.1903 REMARK 3 T13: 0.2600 T23: -0.0448 REMARK 3 L TENSOR REMARK 3 L11: 9.7782 L22: 17.1269 REMARK 3 L33: 5.6936 L12: -3.4111 REMARK 3 L13: 0.1489 L23: -1.2278 REMARK 3 S TENSOR REMARK 3 S11: 0.5700 S12: -0.8953 S13: 0.8737 REMARK 3 S21: 1.2122 S22: -0.0779 S23: 0.9288 REMARK 3 S31: -0.3729 S32: 0.0358 S33: -0.4921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019800. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.86 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8521 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.58100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1H3D REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.82 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM TARTRATE, MAGNESIUM CHLORIDE, REMARK 280 SODIUM CITRATE, PH 5.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 66.05000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 38.13399 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 37.79300 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 66.05000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 38.13399 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 37.79300 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 66.05000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 38.13399 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 37.79300 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 66.05000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 38.13399 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 37.79300 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 66.05000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 38.13399 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 37.79300 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 66.05000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 38.13399 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 37.79300 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 76.26797 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 75.58600 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 76.26797 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 75.58600 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 76.26797 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 75.58600 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 76.26797 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 75.58600 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 76.26797 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 75.58600 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 76.26797 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 75.58600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A HEXAMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: -Y, X-Y, Z; -X+Y, REMARK 300 -X, Z; 1/3+Y, 2/3+X, 2/3-Z; 1/3+X-Y, 2/3-Y, 2/3-Z AND 1/3-X, 2/3-X+ REMARK 300 Y, 2/3-Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 28510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 72260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -165.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 132.10000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 66.05000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 114.40196 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 66.05000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 -38.13399 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 75.58600 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 76.26797 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 75.58600 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 132.10000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 76.26797 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 75.58600 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ASP A 3 REMARK 465 ASN A 4 REMARK 465 ALA A 257 REMARK 465 GLY A 258 REMARK 465 ASP A 259 REMARK 465 GLN A 260 REMARK 465 GLN A 261 REMARK 465 ARG A 262 REMARK 465 VAL A 263 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 22 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 31 CG CD CE NZ REMARK 470 ARG A 92 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 147 CG CD CE NZ REMARK 470 GLU A 178 CG CD OE1 OE2 REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 PRO A 234 CG CD REMARK 470 GLU A 236 CG CD OE1 OE2 REMARK 470 ARG A 237 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 249 CG CD OE1 OE2 REMARK 470 PRO A 255 CG CD REMARK 470 LEU A 256 CG CD1 CD2 REMARK 470 GLU A 271 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 VAL A 76 O2A PRT A 500 2.06 REMARK 500 OD2 ASP A 55 O2B PRT A 500 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN A 87 CG GLN A 87 CD 0.145 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 17 CA - CB - CG ANGL. DEV. = 18.3 DEGREES REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 49 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 ASP A 55 CB - CG - OD1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 165 CB - CG - OD2 ANGL. DEV. = 8.2 DEGREES REMARK 500 MET A 231 CB - CG - SD ANGL. DEV. = -19.5 DEGREES REMARK 500 PRO A 234 N - CA - CB ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 36 145.97 -172.99 REMARK 500 PRO A 47 68.48 -68.56 REMARK 500 ASP A 56 -29.98 -37.46 REMARK 500 ASP A 90 57.74 -145.57 REMARK 500 ARG A 97 147.63 179.90 REMARK 500 ASP A 100 31.96 -94.55 REMARK 500 SER A 121 -19.77 -48.19 REMARK 500 SER A 172 -68.50 -137.75 REMARK 500 ALA A 179 -30.56 -38.68 REMARK 500 VAL A 185 -28.26 -160.00 REMARK 500 MET A 231 -166.33 -116.10 REMARK 500 ALA A 233 81.00 -61.71 REMARK 500 PRO A 234 80.13 -62.77 REMARK 500 GLU A 236 -77.89 -48.80 REMARK 500 GLU A 240 -9.38 -58.60 REMARK 500 VAL A 241 -72.80 -79.71 REMARK 500 PRO A 246 101.63 -55.05 REMARK 500 ALA A 248 -42.13 71.41 REMARK 500 ARG A 250 126.29 97.25 REMARK 500 PRO A 251 170.38 -44.39 REMARK 500 LYS A 282 -71.55 -66.15 REMARK 500 ALA A 283 9.02 -67.68 REMARK 500 SER A 288 56.50 26.18 REMARK 500 MET A 298 -93.25 -106.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE LIGAND PRT IS A FRAGMENT OF PHOSPHORIBOSYL ATP REMARK 600 WITH THE RIBOSE AND TRIPHOSPHATE EITHER DISORDERED REMARK 600 OR CLEAVED WITHIN THE CRYSTAL. THE AUTHORS REMARK 600 MODELLED THE RIBOSE AND TRIPHOSPHATE WITH ZERO REMARK 600 OCCUPANCY. REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 PRT A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRT A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TLA A 411 DBREF 1Q1K A 1 299 UNP P60757 HIS1_ECOLI 1 299 SEQRES 1 A 299 MET THR ASP ASN THR ARG LEU ARG ILE ALA MET GLN LYS SEQRES 2 A 299 SER GLY ARG LEU SER ASP ASP SER ARG GLU LEU LEU ALA SEQRES 3 A 299 ARG CYS GLY ILE LYS ILE ASN LEU HIS THR GLN ARG LEU SEQRES 4 A 299 ILE ALA MET ALA GLU ASN MET PRO ILE ASP ILE LEU ARG SEQRES 5 A 299 VAL ARG ASP ASP ASP ILE PRO GLY LEU VAL MET ASP GLY SEQRES 6 A 299 VAL VAL ASP LEU GLY ILE ILE GLY GLU ASN VAL LEU GLU SEQRES 7 A 299 GLU GLU LEU LEU ASN ARG ARG ALA GLN GLY GLU ASP PRO SEQRES 8 A 299 ARG TYR PHE THR LEU ARG ARG LEU ASP PHE GLY GLY CYS SEQRES 9 A 299 ARG LEU SER LEU ALA THR PRO VAL ASP GLU ALA TRP ASP SEQRES 10 A 299 GLY PRO LEU SER LEU ASN GLY LYS ARG ILE ALA THR SER SEQRES 11 A 299 TYR PRO HIS LEU LEU LYS ARG TYR LEU ASP GLN LYS GLY SEQRES 12 A 299 ILE SER PHE LYS SER CYS LEU LEU ASN GLY SER VAL GLU SEQRES 13 A 299 VAL ALA PRO ARG ALA GLY LEU ALA ASP ALA ILE CYS ASP SEQRES 14 A 299 LEU VAL SER THR GLY ALA THR LEU GLU ALA ASN GLY LEU SEQRES 15 A 299 ARG GLU VAL GLU VAL ILE TYR ARG SER LYS ALA CYS LEU SEQRES 16 A 299 ILE GLN ARG ASP GLY GLU MET GLU GLU SER LYS GLN GLN SEQRES 17 A 299 LEU ILE ASP LYS LEU LEU THR ARG ILE GLN GLY VAL ILE SEQRES 18 A 299 GLN ALA ARG GLU SER LYS TYR ILE MET MET HIS ALA PRO SEQRES 19 A 299 THR GLU ARG LEU ASP GLU VAL ILE ALA LEU LEU PRO GLY SEQRES 20 A 299 ALA GLU ARG PRO THR ILE LEU PRO LEU ALA GLY ASP GLN SEQRES 21 A 299 GLN ARG VAL ALA MET HIS MET VAL SER SER GLU THR LEU SEQRES 22 A 299 PHE TRP GLU THR MET GLU LYS LEU LYS ALA LEU GLY ALA SEQRES 23 A 299 SER SER ILE LEU VAL LEU PRO ILE GLU LYS MET MET GLU HET PRT A 500 44 HET TLA A 410 10 HET TLA A 411 10 HETNAM PRT PHOSPHORIBOSYL ATP HETNAM TLA L(+)-TARTARIC ACID HETSYN PRT [[(2~{R},3~{S},4~{R},5~{R})-5-[6-AZANYLIDENE-1-[(2~{R}, HETSYN 2 PRT 3~{R},4~{S},5~{R})-3,4-BIS(OXIDANYL)-5- HETSYN 3 PRT (PHOSPHONOOXYMETHYL)OXOLAN-2-YL]PURIN-9-YL]-3,4- HETSYN 4 PRT BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL] HETSYN 5 PRT PHOSPHONO HYDROGEN PHOSPHATE FORMUL 2 PRT C15 H25 N5 O20 P4 FORMUL 3 TLA 2(C4 H6 O6) HELIX 1 1 LEU A 17 CYS A 28 1 12 HELIX 2 2 ARG A 54 ASP A 56 5 3 HELIX 3 3 ASP A 57 GLY A 65 1 9 HELIX 4 4 GLU A 74 GLY A 88 1 15 HELIX 5 5 GLY A 118 ASN A 123 5 6 HELIX 6 6 TYR A 131 GLY A 143 1 13 HELIX 7 7 SER A 154 ALA A 158 5 5 HELIX 8 8 GLY A 174 ASN A 180 1 7 HELIX 9 9 GLU A 203 SER A 226 1 24 HELIX 10 10 LEU A 238 LEU A 245 1 8 HELIX 11 11 PHE A 274 ALA A 283 1 10 SHEET 1 A 6 ILE A 40 MET A 42 0 SHEET 2 A 6 ILE A 48 VAL A 53 -1 O ILE A 50 N ALA A 41 SHEET 3 A 6 LEU A 7 GLN A 12 1 N LEU A 7 O ASP A 49 SHEET 4 A 6 LEU A 69 GLY A 73 1 O LEU A 69 N ALA A 10 SHEET 5 A 6 ALA A 193 ARG A 198 -1 O ILE A 196 N GLY A 70 SHEET 6 A 6 TYR A 93 ARG A 98 -1 N PHE A 94 O GLN A 197 SHEET 1 B 5 LYS A 147 LEU A 150 0 SHEET 2 B 5 ARG A 126 THR A 129 1 N ILE A 127 O LYS A 147 SHEET 3 B 5 ALA A 166 VAL A 171 1 O ALA A 166 N ALA A 128 SHEET 4 B 5 CYS A 104 PRO A 111 -1 N ALA A 109 O ILE A 167 SHEET 5 B 5 LEU A 182 SER A 191 -1 O SER A 191 N CYS A 104 SHEET 1 C 3 MET A 267 SER A 269 0 SHEET 2 C 3 LYS A 227 MET A 230 -1 N LYS A 227 O SER A 269 SHEET 3 C 3 LEU A 290 LEU A 292 -1 O LEU A 292 N TYR A 228 LINK OH TYR A 131 O2A PRT A 500 1555 1555 2.05 SITE 1 AC1 10 ARG A 16 CYS A 104 GLU A 156 ASP A 169 SITE 2 AC1 10 LEU A 170 SER A 172 THR A 173 GLY A 174 SITE 3 AC1 10 ALA A 175 THR A 176 SITE 1 AC2 6 ALA A 26 ARG A 27 GLY A 29 PHE A 274 SITE 2 AC2 6 TRP A 275 LYS A 296 SITE 1 AC3 3 ARG A 85 TYR A 93 THR A 95 CRYST1 132.100 132.100 113.379 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007570 0.004371 0.000000 0.00000 SCALE2 0.000000 0.008741 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008820 0.00000