HEADER CELL ADHESION 22-JUL-03 1Q1P TITLE E-CADHERIN ACTIVATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPITHELIAL-CADHERIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: E-CADHERIN, UVOMORULIN, CADHERIN-1, ARC-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR D.HAUSSINGER,J.STETEFELD REVDAT 5 16-AUG-23 1Q1P 1 REMARK LINK REVDAT 4 21-MAR-12 1Q1P 1 REMARK VERSN REVDAT 3 24-FEB-09 1Q1P 1 VERSN REVDAT 2 04-MAY-04 1Q1P 1 JRNL REVDAT 1 20-APR-04 1Q1P 0 JRNL AUTH D.HAUSSINGER,T.AHRENS,T.ABERLE,J.ENGEL,J.STETEFELD, JRNL AUTH 2 S.GRZESIEK JRNL TITL PROTEOLYTIC E-CADHERIN ACTIVATION FOLLOWED BY SOLUTION NMR JRNL TITL 2 AND X-RAY CRYSTALLOGRAPHY. JRNL REF EMBO J. V. 23 1699 2004 JRNL REFN ISSN 0261-4189 JRNL PMID 15071499 JRNL DOI 10.1038/SJ.EMBOJ.7600192 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 5324 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.262 REMARK 3 R VALUE (WORKING SET) : 0.259 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 256 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2980 REMARK 3 BIN FREE R VALUE SET COUNT : 21 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1628 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 233 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.85000 REMARK 3 B22 (A**2) : -2.01000 REMARK 3 B33 (A**2) : 1.05000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.22000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.625 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.590 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.728 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.850 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.774 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1659 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1480 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2264 ; 1.877 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3469 ; 1.514 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 211 ; 3.775 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 291 ;22.400 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 266 ; 0.158 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1854 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 294 ; 0.007 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 540 ; 0.332 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1904 ; 0.301 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 168 ; 0.285 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 11 ; 0.221 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 4 ; 0.279 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 21 ; 0.248 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 53 ; 0.333 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 4 ; 0.496 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.178 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1060 ; 1.134 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1735 ; 2.002 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 599 ; 2.694 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 529 ; 4.501 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 6 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 11 REMARK 3 RESIDUE RANGE : A 12 A 19 REMARK 3 RESIDUE RANGE : A 20 A 26 REMARK 3 RESIDUE RANGE : A 35 A 98 REMARK 3 RESIDUE RANGE : A 99 A 107 REMARK 3 RESIDUE RANGE : A 108 A 213 REMARK 3 ORIGIN FOR THE GROUP (A): -1.3919 0.6416 26.0387 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.1243 REMARK 3 T33: 0.0725 T12: 0.0315 REMARK 3 T13: -0.0525 T23: -0.0127 REMARK 3 L TENSOR REMARK 3 L11: 0.2895 L22: 0.7144 REMARK 3 L33: 1.2331 L12: 0.6424 REMARK 3 L13: 0.7992 L23: 0.7913 REMARK 3 S TENSOR REMARK 3 S11: -0.1488 S12: 0.1687 S13: 0.0951 REMARK 3 S21: -0.1267 S22: -0.0082 S23: 0.0784 REMARK 3 S31: -0.1232 S32: 0.1076 S33: 0.1570 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Q1P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-03. REMARK 100 THE DEPOSITION ID IS D_1000019805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ELLIOTT GX-21 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 5324 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.180 REMARK 200 RESOLUTION RANGE LOW (A) : 37.470 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13100 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1FF5.PDB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.16 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 64.60200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 24.30050 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 64.60200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 24.30050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1710 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -39.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 706 O HOH A 928 1.69 REMARK 500 OE1 GLU A 13 O HOH A 824 1.81 REMARK 500 OE2 GLU A 11 N GLN A 101 1.95 REMARK 500 O ILE A 75 O HOH A 773 2.00 REMARK 500 O TYR A 142 N ALA A 144 2.12 REMARK 500 N SER A 116 O HOH A 734 2.16 REMARK 500 OE2 GLU A 182 O HOH A 813 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER A 83 OG1 THR A 164 3444 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 9 CB CYS A 9 SG -0.153 REMARK 500 ALA A 70 CA ALA A 70 CB -0.139 REMARK 500 GLU A 107 CD GLU A 107 OE1 0.096 REMARK 500 GLU A 107 CD GLU A 107 OE2 0.085 REMARK 500 VAL A 117 CB VAL A 117 CG1 -0.178 REMARK 500 SER A 131 CA SER A 131 CB -0.098 REMARK 500 TYR A 148 CG TYR A 148 CD2 -0.084 REMARK 500 LYS A 160 CD LYS A 160 CE 0.158 REMARK 500 PHE A 163 CE1 PHE A 163 CZ -0.153 REMARK 500 THR A 169 CA THR A 169 CB -0.187 REMARK 500 VAL A 171 CB VAL A 171 CG1 -0.127 REMARK 500 TYR A 187 CG TYR A 187 CD2 -0.116 REMARK 500 TYR A 187 CE1 TYR A 187 CZ -0.137 REMARK 500 TYR A 187 CZ TYR A 187 CE2 -0.096 REMARK 500 VAL A 191 CA VAL A 191 CB -0.128 REMARK 500 THR A 210 CB THR A 210 OG1 0.285 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 28 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 44 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 ASP A 103 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 134 CB - CG - OD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ASP A 137 OD1 - CG - OD2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 137 CB - CG - OD2 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 154 CB - CG - OD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 PRO A 155 N - CD - CG ANGL. DEV. = -7.2 DEGREES REMARK 500 PRO A 158 N - CD - CG ANGL. DEV. = -8.4 DEGREES REMARK 500 LYS A 160 CD - CE - NZ ANGL. DEV. = 22.2 DEGREES REMARK 500 ASP A 168 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 THR A 169 OG1 - CB - CG2 ANGL. DEV. = -14.2 DEGREES REMARK 500 THR A 176 OG1 - CB - CG2 ANGL. DEV. = -14.0 DEGREES REMARK 500 THR A 186 OG1 - CB - CG2 ANGL. DEV. = -14.8 DEGREES REMARK 500 THR A 210 OG1 - CB - CG2 ANGL. DEV. = -18.9 DEGREES REMARK 500 ASP A 213 CA - C - O ANGL. DEV. = 19.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 14 -109.15 -117.29 REMARK 500 LEU A 21 -104.71 -74.04 REMARK 500 SER A 26 110.83 -164.04 REMARK 500 ASN A 27 -17.62 -34.52 REMARK 500 ARG A 28 40.31 -76.73 REMARK 500 THR A 32 -144.30 -146.03 REMARK 500 ALA A 43 -100.09 -122.50 REMARK 500 ASP A 44 30.12 -97.80 REMARK 500 THR A 63 33.51 -89.61 REMARK 500 GLN A 64 174.81 166.90 REMARK 500 SER A 83 -21.27 -38.24 REMARK 500 THR A 99 -178.92 -66.54 REMARK 500 ALA A 121 143.60 14.44 REMARK 500 PRO A 123 88.79 -44.73 REMARK 500 MET A 128 -176.06 -175.96 REMARK 500 ASP A 137 80.15 -57.58 REMARK 500 ASN A 143 -8.42 -37.39 REMARK 500 GLU A 156 33.87 -87.94 REMARK 500 ASN A 161 57.95 80.22 REMARK 500 MET A 162 -73.09 -70.50 REMARK 500 LEU A 179 113.43 -30.92 REMARK 500 ARG A 181 -28.33 -36.22 REMARK 500 TYR A 184 73.08 -116.24 REMARK 500 LEU A 196 29.32 84.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 701 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE2 REMARK 620 2 GLU A 69 OE1 86.1 REMARK 620 3 GLU A 69 OE2 96.3 51.1 REMARK 620 4 ASP A 100 OD1 53.6 105.9 72.6 REMARK 620 5 ASP A 100 OD2 70.7 140.9 99.5 35.0 REMARK 620 6 GLN A 101 O 58.1 137.2 145.0 72.8 52.0 REMARK 620 7 ASP A 103 OD1 85.5 91.1 141.7 133.1 116.9 65.6 REMARK 620 8 ASN A 104 ND2 151.8 82.8 96.7 154.7 131.1 117.1 68.9 REMARK 620 9 ASP A 136 OD1 138.6 129.1 122.0 119.8 86.7 80.6 74.2 46.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 703 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 11 OE1 REMARK 620 2 ASP A 67 OD2 143.5 REMARK 620 3 ASP A 67 OD1 107.2 43.2 REMARK 620 4 GLU A 69 OE1 64.4 109.9 71.7 REMARK 620 5 ASP A 103 OD2 94.5 122.0 143.3 92.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 702 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 102 OD1 REMARK 620 2 ASN A 102 ND2 49.7 REMARK 620 3 ASN A 104 O 149.6 117.0 REMARK 620 4 ASP A 134 OD2 98.2 127.4 108.8 REMARK 620 5 ASP A 134 OD1 129.6 162.3 72.2 37.9 REMARK 620 6 ASP A 136 OD2 86.0 132.7 92.1 66.0 57.7 REMARK 620 7 ASP A 136 OD1 70.3 103.3 90.6 100.5 91.2 36.0 REMARK 620 8 ASN A 143 O 48.0 81.7 160.2 51.5 88.0 78.1 91.3 REMARK 620 9 ASP A 195 OD2 112.6 74.4 83.2 87.2 92.7 149.8 171.4 96.5 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 703 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FF5 RELATED DB: PDB DBREF 1Q1P A 2 213 UNP P09803 CADH1_MOUSE 158 369 SEQRES 1 A 212 TRP VAL ILE PRO PRO ILE SER CYS PRO GLU ASN GLU LYS SEQRES 2 A 212 GLY GLU PHE PRO LYS ASN LEU VAL GLN ILE LYS SER ASN SEQRES 3 A 212 ARG ASP LYS GLU THR LYS VAL PHE TYR SER ILE THR GLY SEQRES 4 A 212 GLN GLY ALA ASP LYS PRO PRO VAL GLY VAL PHE ILE ILE SEQRES 5 A 212 GLU ARG GLU THR GLY TRP LEU LYS VAL THR GLN PRO LEU SEQRES 6 A 212 ASP ARG GLU ALA ILE ALA LYS TYR ILE LEU TYR SER HIS SEQRES 7 A 212 ALA VAL SER SER ASN GLY GLU ALA VAL GLU ASP PRO MET SEQRES 8 A 212 GLU ILE VAL ILE THR VAL THR ASP GLN ASN ASP ASN ARG SEQRES 9 A 212 PRO GLU PHE THR GLN GLU VAL PHE GLU GLY SER VAL ALA SEQRES 10 A 212 GLU GLY ALA VAL PRO GLY THR SER VAL MET LYS VAL SER SEQRES 11 A 212 ALA THR ASP ALA ASP ASP ASP VAL ASN THR TYR ASN ALA SEQRES 12 A 212 ALA ILE ALA TYR THR ILE VAL SER GLN ASP PRO GLU LEU SEQRES 13 A 212 PRO HIS LYS ASN MET PHE THR VAL ASN ARG ASP THR GLY SEQRES 14 A 212 VAL ILE SER VAL LEU THR SER GLY LEU ASP ARG GLU SER SEQRES 15 A 212 TYR PRO THR TYR THR LEU VAL VAL GLN ALA ALA ASP LEU SEQRES 16 A 212 GLN GLY GLU GLY LEU SER THR THR ALA LYS ALA VAL ILE SEQRES 17 A 212 THR VAL LYS ASP HET CA A 701 1 HET CA A 702 1 HET CA A 703 1 HETNAM CA CALCIUM ION FORMUL 2 CA 3(CA 2+) FORMUL 5 HOH *233(H2 O) HELIX 1 1 THR A 141 ALA A 145 5 5 HELIX 2 2 ASP A 195 GLU A 199 1 5 SHEET 1 A 4 ILE A 7 PRO A 10 0 SHEET 2 A 4 MET A 92 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 A 4 LYS A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 A 4 VAL A 34 THR A 39 -1 N THR A 39 O TYR A 77 SHEET 1 B 4 ILE A 7 PRO A 10 0 SHEET 2 B 4 MET A 92 THR A 99 1 O THR A 97 N ILE A 7 SHEET 3 B 4 LYS A 73 SER A 82 -1 N LEU A 76 O ILE A 94 SHEET 4 B 4 GLU A 86 ALA A 87 -1 O GLU A 86 N SER A 82 SHEET 1 C 2 LYS A 19 GLN A 23 0 SHEET 2 C 2 TRP A 59 VAL A 62 -1 O VAL A 62 N LYS A 19 SHEET 1 D 2 GLU A 107 PHE A 108 0 SHEET 2 D 2 ALA A 132 THR A 133 -1 O THR A 133 N GLU A 107 SHEET 1 E 4 VAL A 112 GLY A 115 0 SHEET 2 E 4 SER A 202 ILE A 209 1 O LYS A 206 N PHE A 113 SHEET 3 E 4 THR A 188 ALA A 194 -1 N LEU A 189 O ALA A 207 SHEET 4 E 4 TYR A 148 SER A 152 -1 N THR A 149 O GLN A 192 SHEET 1 F 3 SER A 126 LYS A 129 0 SHEET 2 F 3 VAL A 171 VAL A 174 -1 O ILE A 172 N MET A 128 SHEET 3 F 3 PHE A 163 VAL A 165 -1 N THR A 164 O SER A 173 LINK OE2 GLU A 11 CA CA A 701 1555 1555 3.33 LINK OE1 GLU A 11 CA CA A 703 1555 1555 2.83 LINK OD2 ASP A 67 CA CA A 703 1555 1555 2.55 LINK OD1 ASP A 67 CA CA A 703 1555 1555 3.06 LINK OE1 GLU A 69 CA CA A 701 1555 1555 2.56 LINK OE2 GLU A 69 CA CA A 701 1555 1555 2.43 LINK OE1 GLU A 69 CA CA A 703 1555 1555 2.79 LINK OD1 ASP A 100 CA CA A 701 1555 1555 2.09 LINK OD2 ASP A 100 CA CA A 701 1555 1555 3.40 LINK O GLN A 101 CA CA A 701 1555 1555 2.44 LINK OD1 ASN A 102 CA CA A 702 1555 1555 2.45 LINK ND2 ASN A 102 CA CA A 702 1555 1555 2.92 LINK OD1 ASP A 103 CA CA A 701 1555 1555 2.86 LINK OD2 ASP A 103 CA CA A 703 1555 1555 2.93 LINK ND2 ASN A 104 CA CA A 701 1555 1555 3.13 LINK O ASN A 104 CA CA A 702 1555 1555 2.27 LINK OD2 ASP A 134 CA CA A 702 1555 1555 3.04 LINK OD1 ASP A 134 CA CA A 702 1555 1555 3.15 LINK OD1 ASP A 136 CA CA A 701 1555 1555 3.13 LINK OD2 ASP A 136 CA CA A 702 1555 1555 2.01 LINK OD1 ASP A 136 CA CA A 702 1555 1555 3.38 LINK O ASN A 143 CA CA A 702 1555 1555 3.04 LINK OD2 ASP A 195 CA CA A 702 1555 1555 2.36 CISPEP 1 PHE A 17 PRO A 18 0 3.76 CISPEP 2 PRO A 46 PRO A 47 0 -5.41 CISPEP 3 ASP A 154 PRO A 155 0 2.30 CISPEP 4 LEU A 157 PRO A 158 0 3.84 SITE 1 AC1 7 GLU A 11 GLU A 69 ASP A 100 GLN A 101 SITE 2 AC1 7 ASP A 103 ASN A 104 ASP A 136 SITE 1 AC2 6 ASN A 102 ASN A 104 ASP A 134 ASP A 136 SITE 2 AC2 6 ASN A 143 ASP A 195 SITE 1 AC3 5 GLU A 11 ASN A 12 ASP A 67 GLU A 69 SITE 2 AC3 5 ASP A 103 CRYST1 129.204 48.601 58.669 90.00 113.93 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007740 0.000000 0.003435 0.00000 SCALE2 0.000000 0.020576 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018648 0.00000