data_1Q29
# 
_entry.id   1Q29 
# 
_audit_conform.dict_name       mmcif_pdbx.dic 
_audit_conform.dict_version    5.389 
_audit_conform.dict_location   http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 
# 
loop_
_database_2.database_id 
_database_2.database_code 
_database_2.pdbx_database_accession 
_database_2.pdbx_DOI 
PDB   1Q29         pdb_00001q29 10.2210/pdb1q29/pdb 
NDB   UR0032       ?            ?                   
RCSB  RCSB019824   ?            ?                   
WWPDB D_1000019824 ?            ?                   
# 
loop_
_pdbx_audit_revision_history.ordinal 
_pdbx_audit_revision_history.data_content_type 
_pdbx_audit_revision_history.major_revision 
_pdbx_audit_revision_history.minor_revision 
_pdbx_audit_revision_history.revision_date 
1 'Structure model' 1 0 2004-02-24 
2 'Structure model' 1 1 2008-04-29 
3 'Structure model' 1 2 2011-07-13 
4 'Structure model' 1 3 2019-07-24 
5 'Structure model' 1 4 2024-02-14 
6 'Structure model' 1 5 2024-04-03 
# 
_pdbx_audit_revision_details.ordinal             1 
_pdbx_audit_revision_details.revision_ordinal    1 
_pdbx_audit_revision_details.data_content_type   'Structure model' 
_pdbx_audit_revision_details.provider            repository 
_pdbx_audit_revision_details.type                'Initial release' 
_pdbx_audit_revision_details.description         ? 
_pdbx_audit_revision_details.details             ? 
# 
loop_
_pdbx_audit_revision_group.ordinal 
_pdbx_audit_revision_group.revision_ordinal 
_pdbx_audit_revision_group.data_content_type 
_pdbx_audit_revision_group.group 
1  2 'Structure model' 'Version format compliance' 
2  3 'Structure model' 'Version format compliance' 
3  4 'Structure model' Advisory                    
4  4 'Structure model' 'Data collection'           
5  4 'Structure model' 'Derived calculations'      
6  4 'Structure model' 'Refinement description'    
7  5 'Structure model' 'Data collection'           
8  5 'Structure model' 'Database references'       
9  5 'Structure model' 'Derived calculations'      
10 6 'Structure model' 'Refinement description'    
# 
loop_
_pdbx_audit_revision_category.ordinal 
_pdbx_audit_revision_category.revision_ordinal 
_pdbx_audit_revision_category.data_content_type 
_pdbx_audit_revision_category.category 
1 4 'Structure model' pdbx_validate_polymer_linkage 
2 4 'Structure model' software                      
3 4 'Structure model' struct_conn                   
4 5 'Structure model' chem_comp_atom                
5 5 'Structure model' chem_comp_bond                
6 5 'Structure model' database_2                    
7 5 'Structure model' struct_conn                   
8 5 'Structure model' struct_site                   
9 6 'Structure model' pdbx_initial_refinement_model 
# 
loop_
_pdbx_audit_revision_item.ordinal 
_pdbx_audit_revision_item.revision_ordinal 
_pdbx_audit_revision_item.data_content_type 
_pdbx_audit_revision_item.item 
1  4 'Structure model' '_software.classification'            
2  4 'Structure model' '_software.name'                      
3  4 'Structure model' '_software.version'                   
4  4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 
5  5 'Structure model' '_database_2.pdbx_DOI'                
6  5 'Structure model' '_database_2.pdbx_database_accession' 
7  5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'      
8  5 'Structure model' '_struct_conn.ptnr1_label_atom_id'    
9  5 'Structure model' '_struct_conn.ptnr1_label_seq_id'     
10 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'      
11 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'    
12 5 'Structure model' '_struct_conn.ptnr2_label_seq_id'     
13 5 'Structure model' '_struct_site.pdbx_auth_asym_id'      
14 5 'Structure model' '_struct_site.pdbx_auth_comp_id'      
15 5 'Structure model' '_struct_site.pdbx_auth_seq_id'       
# 
_pdbx_database_status.status_code                     REL 
_pdbx_database_status.entry_id                        1Q29 
_pdbx_database_status.recvd_initial_deposition_date   2003-07-23 
_pdbx_database_status.deposit_site                    RCSB 
_pdbx_database_status.process_site                    RCSB 
_pdbx_database_status.SG_entry                        . 
_pdbx_database_status.pdb_format_compatible           Y 
_pdbx_database_status.status_code_mr                  ? 
_pdbx_database_status.status_code_sf                  ? 
_pdbx_database_status.status_code_cs                  ? 
_pdbx_database_status.methods_development_category    ? 
_pdbx_database_status.status_code_nmr_data            ? 
# 
_pdbx_database_related.db_name        PDB 
_pdbx_database_related.db_id          1NYI 
_pdbx_database_related.details        'Crosslinked Hammerhead Ribozyme Initial State' 
_pdbx_database_related.content_type   unspecified 
# 
loop_
_audit_author.name 
_audit_author.pdbx_ordinal 
'Dunham, C.M.' 1 
'Murray, J.B.' 2 
'Scott, W.G.'  3 
# 
_citation.id                        primary 
_citation.title                     'A helical twist-induced conformational switch activates cleavage in the hammerhead ribozyme.' 
_citation.journal_abbrev            J.Mol.Biol. 
_citation.journal_volume            332 
_citation.page_first                327 
_citation.page_last                 336 
_citation.year                      2003 
_citation.journal_id_ASTM           JMOBAK 
_citation.country                   UK 
_citation.journal_id_ISSN           0022-2836 
_citation.journal_id_CSD            0070 
_citation.book_publisher            ? 
_citation.pdbx_database_id_PubMed   12948485 
_citation.pdbx_database_id_DOI      '10.1016/S0022-2836(03)00843-X' 
# 
loop_
_citation_author.citation_id 
_citation_author.name 
_citation_author.ordinal 
_citation_author.identifier_ORCID 
primary 'Dunham, C.M.' 1 ? 
primary 'Murray, J.B.' 2 ? 
primary 'Scott, W.G.'  3 ? 
# 
loop_
_entity.id 
_entity.type 
_entity.src_method 
_entity.pdbx_description 
_entity.formula_weight 
_entity.pdbx_number_of_molecules 
_entity.pdbx_ec 
_entity.pdbx_mutation 
_entity.pdbx_fragment 
_entity.details 
1 polymer     syn "5'-R(*GP*GP*UP*GP*GP*UP*CP*UP*GP*AP*UP*GP*AP*GP*GP*CP*C)-3'" 5515.309 1 ? ? ? ? 
2 polymer     syn Ribozyme                                                      7674.670 1 ? ? ? ? 
3 non-polymer syn 'COBALT (II) ION'                                             58.933   5 ? ? ? ? 
# 
loop_
_entity_poly.entity_id 
_entity_poly.type 
_entity_poly.nstd_linkage 
_entity_poly.nstd_monomer 
_entity_poly.pdbx_seq_one_letter_code 
_entity_poly.pdbx_seq_one_letter_code_can 
_entity_poly.pdbx_strand_id 
_entity_poly.pdbx_target_identifier 
1 polyribonucleotide no no GGUGGUCUGAUGAGGCC        GGUGGUCUGAUGAGGCC        A ? 
2 polyribonucleotide no no GCCGAAACUCGUAAGAGUCACCAC GCCGAAACUCGUAAGAGUCACCAC B ? 
# 
_pdbx_entity_nonpoly.entity_id   3 
_pdbx_entity_nonpoly.name        'COBALT (II) ION' 
_pdbx_entity_nonpoly.comp_id     CO 
# 
loop_
_entity_poly_seq.entity_id 
_entity_poly_seq.num 
_entity_poly_seq.mon_id 
_entity_poly_seq.hetero 
1 1  G n 
1 2  G n 
1 3  U n 
1 4  G n 
1 5  G n 
1 6  U n 
1 7  C n 
1 8  U n 
1 9  G n 
1 10 A n 
1 11 U n 
1 12 G n 
1 13 A n 
1 14 G n 
1 15 G n 
1 16 C n 
1 17 C n 
2 1  G n 
2 2  C n 
2 3  C n 
2 4  G n 
2 5  A n 
2 6  A n 
2 7  A n 
2 8  C n 
2 9  U n 
2 10 C n 
2 11 G n 
2 12 U n 
2 13 A n 
2 14 A n 
2 15 G n 
2 16 A n 
2 17 G n 
2 18 U n 
2 19 C n 
2 20 A n 
2 21 C n 
2 22 C n 
2 23 A n 
2 24 C n 
# 
loop_
_chem_comp.id 
_chem_comp.type 
_chem_comp.mon_nstd_flag 
_chem_comp.name 
_chem_comp.pdbx_synonyms 
_chem_comp.formula 
_chem_comp.formula_weight 
A  'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 
C  'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE"  ? 'C9 H14 N3 O8 P'  323.197 
CO non-polymer   . 'COBALT (II) ION'            ? 'Co 2'            58.933  
G  'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 
U  'RNA linking' y "URIDINE-5'-MONOPHOSPHATE"   ? 'C9 H13 N2 O9 P'  324.181 
# 
loop_
_pdbx_poly_seq_scheme.asym_id 
_pdbx_poly_seq_scheme.entity_id 
_pdbx_poly_seq_scheme.seq_id 
_pdbx_poly_seq_scheme.mon_id 
_pdbx_poly_seq_scheme.ndb_seq_num 
_pdbx_poly_seq_scheme.pdb_seq_num 
_pdbx_poly_seq_scheme.auth_seq_num 
_pdbx_poly_seq_scheme.pdb_mon_id 
_pdbx_poly_seq_scheme.auth_mon_id 
_pdbx_poly_seq_scheme.pdb_strand_id 
_pdbx_poly_seq_scheme.pdb_ins_code 
_pdbx_poly_seq_scheme.hetero 
A 1 1  G 1  10  500 G G A . n 
A 1 2  G 2  11  11  G G A . n 
A 1 3  U 3  12  12  U U A . n 
A 1 4  G 4  13  13  G G A . n 
A 1 5  G 5  14  14  G G A . n 
A 1 6  U 6  15  15  U U A . n 
A 1 7  C 7  16  16  C C A . n 
A 1 8  U 8  17  17  U U A . n 
A 1 9  G 9  18  18  G G A . n 
A 1 10 A 10 19  19  A A A . n 
A 1 11 U 11 20  20  U U A . n 
A 1 12 G 12 21  21  G G A . n 
A 1 13 A 13 22  22  A A A . n 
A 1 14 G 14 23  23  G G A . n 
A 1 15 G 15 24  24  G G A . n 
A 1 16 C 16 25  25  C C A . n 
A 1 17 C 17 26  26  C C A . n 
B 2 1  G 1  102 102 G G B . n 
B 2 2  C 2  103 103 C C B . n 
B 2 3  C 3  104 104 C C B . n 
B 2 4  G 4  105 105 G G B . n 
B 2 5  A 5  106 106 A A B . n 
B 2 6  A 6  107 107 A A B . n 
B 2 7  A 7  108 108 A A B . n 
B 2 8  C 8  109 109 C C B . n 
B 2 9  U 9  110 110 U U B . n 
B 2 10 C 10 111 111 C C B . n 
B 2 11 G 11 112 112 G G B . n 
B 2 12 U 12 113 113 U U B . n 
B 2 13 A 13 114 114 A A B . n 
B 2 14 A 14 115 115 A A B . n 
B 2 15 G 15 116 116 G G B . n 
B 2 16 A 16 117 117 A A B . n 
B 2 17 G 17 118 118 G G B . n 
B 2 18 U 18 119 119 U U B . n 
B 2 19 C 19 120 120 C C B . n 
B 2 20 A 20 121 121 A A B . n 
B 2 21 C 21 122 122 C C B . n 
B 2 22 C 22 123 123 C C B . n 
B 2 23 A 23 124 124 A A B . n 
B 2 24 C 24 125 125 C C B . n 
# 
loop_
_pdbx_nonpoly_scheme.asym_id 
_pdbx_nonpoly_scheme.entity_id 
_pdbx_nonpoly_scheme.mon_id 
_pdbx_nonpoly_scheme.ndb_seq_num 
_pdbx_nonpoly_scheme.pdb_seq_num 
_pdbx_nonpoly_scheme.auth_seq_num 
_pdbx_nonpoly_scheme.pdb_mon_id 
_pdbx_nonpoly_scheme.auth_mon_id 
_pdbx_nonpoly_scheme.pdb_strand_id 
_pdbx_nonpoly_scheme.pdb_ins_code 
C 3 CO 1 1 1 CO CO A . 
D 3 CO 1 2 2 CO CO A . 
E 3 CO 1 5 5 CO CO A . 
F 3 CO 1 3 3 CO CO B . 
G 3 CO 1 4 4 CO CO B . 
# 
_pdbx_unobs_or_zero_occ_atoms.id               1 
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num    1 
_pdbx_unobs_or_zero_occ_atoms.polymer_flag     Y 
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag   1 
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id     A 
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id     G 
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id      18 
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code     ? 
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id     N2 
_pdbx_unobs_or_zero_occ_atoms.label_alt_id     ? 
_pdbx_unobs_or_zero_occ_atoms.label_asym_id    A 
_pdbx_unobs_or_zero_occ_atoms.label_comp_id    G 
_pdbx_unobs_or_zero_occ_atoms.label_seq_id     9 
_pdbx_unobs_or_zero_occ_atoms.label_atom_id    N2 
# 
loop_
_software.name 
_software.classification 
_software.version 
_software.citation_id 
_software.pdbx_ordinal 
REFMAC refinement       5.1       ? 1 
SCALA  'data scaling'   .         ? 2 
CNS    refinement       .         ? 3 
MOSFLM 'data reduction' .         ? 4 
CCP4   'data scaling'   '(SCALA)' ? 5 
CNS    phasing          .         ? 6 
# 
_cell.entry_id           1Q29 
_cell.length_a           66.689 
_cell.length_b           66.689 
_cell.length_c           140.528 
_cell.angle_alpha        90.00 
_cell.angle_beta         90.00 
_cell.angle_gamma        120.00 
_cell.Z_PDB              6 
_cell.pdbx_unique_axis   ? 
# 
_symmetry.entry_id                         1Q29 
_symmetry.space_group_name_H-M             'P 31 2 1' 
_symmetry.pdbx_full_space_group_name_H-M   ? 
_symmetry.cell_setting                     ? 
_symmetry.Int_Tables_number                152 
# 
_exptl.entry_id          1Q29 
_exptl.method            'X-RAY DIFFRACTION' 
_exptl.crystals_number   ? 
# 
_exptl_crystal.id                    1 
_exptl_crystal.density_meas          ? 
_exptl_crystal.density_Matthews      6.84 
_exptl_crystal.density_percent_sol   82.02 
_exptl_crystal.description           ? 
# 
_diffrn.id                     1 
_diffrn.ambient_temp           100 
_diffrn.ambient_temp_details   ? 
_diffrn.crystal_id             1 
# 
_diffrn_detector.diffrn_id              1 
_diffrn_detector.detector               CCD 
_diffrn_detector.type                   ? 
_diffrn_detector.pdbx_collection_date   ? 
_diffrn_detector.details                ? 
# 
_diffrn_radiation.diffrn_id                        1 
_diffrn_radiation.wavelength_id                    1 
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l   M 
_diffrn_radiation.monochromator                    ? 
_diffrn_radiation.pdbx_diffrn_protocol             'SINGLE WAVELENGTH' 
_diffrn_radiation.pdbx_scattering_type             x-ray 
# 
_diffrn_radiation_wavelength.id           1 
_diffrn_radiation_wavelength.wavelength   . 
_diffrn_radiation_wavelength.wt           1.0 
# 
_diffrn_source.diffrn_id                   1 
_diffrn_source.source                      SYNCHROTRON 
_diffrn_source.type                        'ALS BEAMLINE 5.0.2' 
_diffrn_source.pdbx_synchrotron_site       ALS 
_diffrn_source.pdbx_synchrotron_beamline   5.0.2 
_diffrn_source.pdbx_wavelength             ? 
_diffrn_source.pdbx_wavelength_list        ? 
# 
_refine.entry_id                                 1Q29 
_refine.ls_number_reflns_obs                     6872 
_refine.ls_number_reflns_all                     ? 
_refine.pdbx_ls_sigma_I                          ? 
_refine.pdbx_ls_sigma_F                          0 
_refine.pdbx_data_cutoff_high_absF               ? 
_refine.pdbx_data_cutoff_low_absF                ? 
_refine.pdbx_data_cutoff_high_rms_absF           ? 
_refine.ls_d_res_low                             19.80 
_refine.ls_d_res_high                            3.00 
_refine.ls_percent_reflns_obs                    99.30 
_refine.ls_R_factor_obs                          0.24559 
_refine.ls_R_factor_all                          ? 
_refine.ls_R_factor_R_work                       0.24196 
_refine.ls_R_factor_R_free                       0.27914 
_refine.ls_R_factor_R_free_error                 ? 
_refine.ls_R_factor_R_free_error_details         ? 
_refine.ls_percent_reflns_R_free                 9.8 
_refine.ls_number_reflns_R_free                  744 
_refine.ls_number_parameters                     ? 
_refine.ls_number_restraints                     ? 
_refine.occupancy_min                            ? 
_refine.occupancy_max                            ? 
_refine.correlation_coeff_Fo_to_Fc               0.944 
_refine.correlation_coeff_Fo_to_Fc_free          0.924 
_refine.B_iso_mean                               77.623 
_refine.aniso_B[1][1]                            0.19 
_refine.aniso_B[2][2]                            0.19 
_refine.aniso_B[3][3]                            -0.28 
_refine.aniso_B[1][2]                            0.09 
_refine.aniso_B[1][3]                            0.00 
_refine.aniso_B[2][3]                            0.00 
_refine.solvent_model_details                    'BABINET MODEL WITH MASK' 
_refine.solvent_model_param_ksol                 ? 
_refine.solvent_model_param_bsol                 ? 
_refine.pdbx_solvent_vdw_probe_radii             1.40 
_refine.pdbx_solvent_ion_probe_radii             0.80 
_refine.pdbx_solvent_shrinkage_radii             0.80 
_refine.pdbx_ls_cross_valid_method               THROUGHOUT 
_refine.details                                  ? 
_refine.pdbx_starting_model                      'NDB entry urx057' 
_refine.pdbx_method_to_determine_struct          'MOLECULAR REPLACEMENT' 
_refine.pdbx_isotropic_thermal_model             ? 
_refine.pdbx_stereochemistry_target_values       ? 
_refine.pdbx_stereochem_target_val_spec_case     ? 
_refine.pdbx_R_Free_selection_details            RANDOM 
_refine.pdbx_overall_ESU_R                       0.385 
_refine.pdbx_overall_ESU_R_Free                  0.310 
_refine.overall_SU_ML                            0.310 
_refine.overall_SU_B                             17.927 
_refine.ls_redundancy_reflns_obs                 ? 
_refine.overall_SU_R_Cruickshank_DPI             ? 
_refine.overall_SU_R_free                        ? 
_refine.pdbx_refine_id                           'X-RAY DIFFRACTION' 
_refine.pdbx_diffrn_id                           1 
_refine.pdbx_TLS_residual_ADP_flag               ? 
_refine.pdbx_overall_phase_error                 ? 
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI   ? 
_refine.pdbx_overall_SU_R_Blow_DPI               ? 
_refine.pdbx_overall_SU_R_free_Blow_DPI          ? 
# 
_refine_hist.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_hist.cycle_id                         LAST 
_refine_hist.pdbx_number_atoms_protein        0 
_refine_hist.pdbx_number_atoms_nucleic_acid   872 
_refine_hist.pdbx_number_atoms_ligand         5 
_refine_hist.number_atoms_solvent             0 
_refine_hist.number_atoms_total               877 
_refine_hist.d_res_high                       3.00 
_refine_hist.d_res_low                        19.80 
# 
loop_
_refine_ls_restr.type 
_refine_ls_restr.dev_ideal 
_refine_ls_restr.dev_ideal_target 
_refine_ls_restr.weight 
_refine_ls_restr.number 
_refine_ls_restr.pdbx_refine_id 
_refine_ls_restr.pdbx_restraint_function 
r_bond_refined_d         0.011 ? .021 975  'X-RAY DIFFRACTION' ? 
r_angle_refined_deg      2.077 ? 3.0  1512 'X-RAY DIFFRACTION' ? 
r_chiral_restr           0.092 ? .20  164  'X-RAY DIFFRACTION' ? 
r_gen_planes_refined     0.006 ? .02  427  'X-RAY DIFFRACTION' ? 
r_nbd_refined            0.196 ? .20  396  'X-RAY DIFFRACTION' ? 
r_xyhbond_nbd_refined    0.212 ? .20  14   'X-RAY DIFFRACTION' ? 
r_symmetry_vdw_refined   0.195 ? .20  25   'X-RAY DIFFRACTION' ? 
r_symmetry_hbond_refined 0.173 ? .20  4    'X-RAY DIFFRACTION' ? 
r_scbond_it              1.087 ? 3.0  975  'X-RAY DIFFRACTION' ? 
r_scangle_it             1.728 ? 4.5  1512 'X-RAY DIFFRACTION' ? 
# 
_refine_ls_shell.pdbx_total_number_of_bins_used   20 
_refine_ls_shell.d_res_high                       3.001 
_refine_ls_shell.d_res_low                        3.077 
_refine_ls_shell.number_reflns_R_work             474 
_refine_ls_shell.R_factor_R_work                  0.438 
_refine_ls_shell.percent_reflns_obs               ? 
_refine_ls_shell.R_factor_R_free                  0.412 
_refine_ls_shell.R_factor_R_free_error            ? 
_refine_ls_shell.percent_reflns_R_free            ? 
_refine_ls_shell.number_reflns_R_free             55 
_refine_ls_shell.redundancy_reflns_obs            ? 
_refine_ls_shell.pdbx_refine_id                   'X-RAY DIFFRACTION' 
_refine_ls_shell.number_reflns_all                ? 
_refine_ls_shell.R_factor_all                     ? 
# 
_database_PDB_matrix.entry_id          1Q29 
_database_PDB_matrix.origx[1][1]       1.000000 
_database_PDB_matrix.origx[1][2]       0.000000 
_database_PDB_matrix.origx[1][3]       0.000000 
_database_PDB_matrix.origx[2][1]       0.000000 
_database_PDB_matrix.origx[2][2]       1.000000 
_database_PDB_matrix.origx[2][3]       0.000000 
_database_PDB_matrix.origx[3][1]       0.000000 
_database_PDB_matrix.origx[3][2]       0.000000 
_database_PDB_matrix.origx[3][3]       1.000000 
_database_PDB_matrix.origx_vector[1]   0.00000 
_database_PDB_matrix.origx_vector[2]   0.00000 
_database_PDB_matrix.origx_vector[3]   0.00000 
# 
_struct.entry_id                  1Q29 
_struct.title                     
;Hammerhead Ribozyme with 5'-5' G-G linkage: Conformational change experiment
;
_struct.pdbx_model_details        ? 
_struct.pdbx_CASP_flag            ? 
_struct.pdbx_model_type_details   ? 
# 
_struct_keywords.entry_id        1Q29 
_struct_keywords.pdbx_keywords   RNA 
_struct_keywords.text            'Hammerhead Ribozyme, RNA' 
# 
loop_
_struct_asym.id 
_struct_asym.pdbx_blank_PDB_chainid_flag 
_struct_asym.pdbx_modified 
_struct_asym.entity_id 
_struct_asym.details 
A N N 1 ? 
B N N 2 ? 
C N N 3 ? 
D N N 3 ? 
E N N 3 ? 
F N N 3 ? 
G N N 3 ? 
# 
loop_
_struct_ref.id 
_struct_ref.entity_id 
_struct_ref.db_name 
_struct_ref.db_code 
_struct_ref.pdbx_db_accession 
_struct_ref.pdbx_db_isoform 
_struct_ref.pdbx_seq_one_letter_code 
_struct_ref.pdbx_align_begin 
1 1 PDB 1Q29 1Q29 ? ? ? 
2 2 PDB 1Q29 1Q29 ? ? ? 
# 
loop_
_struct_ref_seq.align_id 
_struct_ref_seq.ref_id 
_struct_ref_seq.pdbx_PDB_id_code 
_struct_ref_seq.pdbx_strand_id 
_struct_ref_seq.seq_align_beg 
_struct_ref_seq.pdbx_seq_align_beg_ins_code 
_struct_ref_seq.seq_align_end 
_struct_ref_seq.pdbx_seq_align_end_ins_code 
_struct_ref_seq.pdbx_db_accession 
_struct_ref_seq.db_align_beg 
_struct_ref_seq.pdbx_db_align_beg_ins_code 
_struct_ref_seq.db_align_end 
_struct_ref_seq.pdbx_db_align_end_ins_code 
_struct_ref_seq.pdbx_auth_seq_align_beg 
_struct_ref_seq.pdbx_auth_seq_align_end 
1 1 1Q29 A 1 ? 17 ? 1Q29 10  ? 26  ? 10  26  
2 2 1Q29 B 1 ? 24 ? 1Q29 102 ? 125 ? 102 125 
# 
_pdbx_struct_assembly.id                   1 
_pdbx_struct_assembly.details              author_defined_assembly 
_pdbx_struct_assembly.method_details       ? 
_pdbx_struct_assembly.oligomeric_details   dimeric 
_pdbx_struct_assembly.oligomeric_count     2 
# 
_pdbx_struct_assembly_gen.assembly_id       1 
_pdbx_struct_assembly_gen.oper_expression   1 
_pdbx_struct_assembly_gen.asym_id_list      A,B,C,D,E,F,G 
# 
_pdbx_struct_oper_list.id                   1 
_pdbx_struct_oper_list.type                 'identity operation' 
_pdbx_struct_oper_list.name                 1_555 
_pdbx_struct_oper_list.symmetry_operation   x,y,z 
_pdbx_struct_oper_list.matrix[1][1]         1.0000000000 
_pdbx_struct_oper_list.matrix[1][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[1][3]         0.0000000000 
_pdbx_struct_oper_list.vector[1]            0.0000000000 
_pdbx_struct_oper_list.matrix[2][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[2][2]         1.0000000000 
_pdbx_struct_oper_list.matrix[2][3]         0.0000000000 
_pdbx_struct_oper_list.vector[2]            0.0000000000 
_pdbx_struct_oper_list.matrix[3][1]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][2]         0.0000000000 
_pdbx_struct_oper_list.matrix[3][3]         1.0000000000 
_pdbx_struct_oper_list.vector[3]            0.0000000000 
# 
_struct_biol.id                    1 
_struct_biol.details               
;Hammerhead Ribozyme with 5'-5' G-G linkage at 5' end of enzyme strand
;
_struct_biol.pdbx_parent_biol_id   ? 
# 
loop_
_struct_conn.id 
_struct_conn.conn_type_id 
_struct_conn.pdbx_leaving_atom_flag 
_struct_conn.pdbx_PDB_id 
_struct_conn.ptnr1_label_asym_id 
_struct_conn.ptnr1_label_comp_id 
_struct_conn.ptnr1_label_seq_id 
_struct_conn.ptnr1_label_atom_id 
_struct_conn.pdbx_ptnr1_label_alt_id 
_struct_conn.pdbx_ptnr1_PDB_ins_code 
_struct_conn.pdbx_ptnr1_standard_comp_id 
_struct_conn.ptnr1_symmetry 
_struct_conn.ptnr2_label_asym_id 
_struct_conn.ptnr2_label_comp_id 
_struct_conn.ptnr2_label_seq_id 
_struct_conn.ptnr2_label_atom_id 
_struct_conn.pdbx_ptnr2_label_alt_id 
_struct_conn.pdbx_ptnr2_PDB_ins_code 
_struct_conn.ptnr1_auth_asym_id 
_struct_conn.ptnr1_auth_comp_id 
_struct_conn.ptnr1_auth_seq_id 
_struct_conn.ptnr2_auth_asym_id 
_struct_conn.ptnr2_auth_comp_id 
_struct_conn.ptnr2_auth_seq_id 
_struct_conn.ptnr2_symmetry 
_struct_conn.pdbx_ptnr3_label_atom_id 
_struct_conn.pdbx_ptnr3_label_seq_id 
_struct_conn.pdbx_ptnr3_label_comp_id 
_struct_conn.pdbx_ptnr3_label_asym_id 
_struct_conn.pdbx_ptnr3_label_alt_id 
_struct_conn.pdbx_ptnr3_PDB_ins_code 
_struct_conn.details 
_struct_conn.pdbx_dist_value 
_struct_conn.pdbx_value_order 
_struct_conn.pdbx_role 
covale1  covale one ? A G  1  "O5'" ? ? ? 1_555 A G 2  P   ? ? A G  10  A G 11  1_555 ? ? ? ? ? ? ?             1.591 ? ? 
metalc1  metalc ?   ? D CO .  CO    ? ? ? 1_555 A G 9  N7  ? ? A CO 2   A G 18  1_555 ? ? ? ? ? ? ?             2.560 ? ? 
metalc2  metalc ?   ? E CO .  CO    ? ? ? 1_555 A A 13 OP2 ? ? A CO 5   A A 22  1_555 ? ? ? ? ? ? ?             2.326 ? ? 
metalc3  metalc ?   ? E CO .  CO    ? ? ? 1_555 A G 14 N7  ? ? A CO 5   A G 23  1_555 ? ? ? ? ? ? ?             2.348 ? ? 
metalc4  metalc ?   ? F CO .  CO    ? ? ? 1_555 B G 15 N7  ? ? B CO 3   B G 116 1_555 ? ? ? ? ? ? ?             2.583 ? ? 
metalc5  metalc ?   ? G CO .  CO    ? ? ? 1_555 B G 17 N7  ? ? B CO 4   B G 118 1_555 ? ? ? ? ? ? ?             1.996 ? ? 
hydrog1  hydrog ?   ? A G  1  N1    ? ? ? 1_555 A C 17 N3  ? ? A G  10  A C 26  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog2  hydrog ?   ? A G  1  N2    ? ? ? 1_555 A C 17 O2  ? ? A G  10  A C 26  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog3  hydrog ?   ? A G  1  O6    ? ? ? 1_555 A C 17 N4  ? ? A G  10  A C 26  1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog4  hydrog ?   ? A G  2  N1    ? ? ? 1_555 B C 24 N3  ? ? A G  11  B C 125 1_555 ? ? ? ? ? ? 'G-C PAIR'    ?     ? ? 
hydrog5  hydrog ?   ? A U  3  N3    ? ? ? 1_555 B A 23 N1  ? ? A U  12  B A 124 1_555 ? ? ? ? ? ? 'U-A PAIR'    ?     ? ? 
hydrog6  hydrog ?   ? A G  4  N1    ? ? ? 1_555 B C 22 N3  ? ? A G  13  B C 123 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog7  hydrog ?   ? A G  4  N2    ? ? ? 1_555 B C 22 O2  ? ? A G  13  B C 123 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog8  hydrog ?   ? A G  4  O6    ? ? ? 1_555 B C 22 N4  ? ? A G  13  B C 123 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog9  hydrog ?   ? A G  5  N1    ? ? ? 1_555 B C 21 N3  ? ? A G  14  B C 122 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog10 hydrog ?   ? A G  5  N2    ? ? ? 1_555 B C 21 O2  ? ? A G  14  B C 122 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog11 hydrog ?   ? A G  5  O6    ? ? ? 1_555 B C 21 N4  ? ? A G  14  B C 122 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog12 hydrog ?   ? A U  6  N3    ? ? ? 1_555 B A 20 N1  ? ? A U  15  B A 121 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog13 hydrog ?   ? A U  6  O4    ? ? ? 1_555 B A 20 N6  ? ? A U  15  B A 121 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog14 hydrog ?   ? A U  11 O2    ? ? ? 1_555 B A 6  N6  ? ? A U  20  B A 107 1_555 ? ? ? ? ? ? 'U-A PAIR'    ?     ? ? 
hydrog15 hydrog ?   ? A G  12 N2    ? ? ? 1_555 B A 5  N7  ? ? A G  21  B A 106 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog16 hydrog ?   ? A G  12 N3    ? ? ? 1_555 B A 5  N6  ? ? A G  21  B A 106 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog17 hydrog ?   ? A A  13 N6    ? ? ? 1_555 B G 4  N3  ? ? A A  22  B G 105 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog18 hydrog ?   ? A A  13 N7    ? ? ? 1_555 B G 4  N2  ? ? A A  22  B G 105 1_555 ? ? ? ? ? ? TYPE_11_PAIR  ?     ? ? 
hydrog19 hydrog ?   ? A G  14 N1    ? ? ? 1_555 B C 3  N3  ? ? A G  23  B C 104 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog20 hydrog ?   ? A G  14 N2    ? ? ? 1_555 B C 3  O2  ? ? A G  23  B C 104 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog21 hydrog ?   ? A G  14 O6    ? ? ? 1_555 B C 3  N4  ? ? A G  23  B C 104 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog22 hydrog ?   ? A G  15 N1    ? ? ? 1_555 B C 2  N3  ? ? A G  24  B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog23 hydrog ?   ? A G  15 N2    ? ? ? 1_555 B C 2  O2  ? ? A G  24  B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog24 hydrog ?   ? A G  15 O6    ? ? ? 1_555 B C 2  N4  ? ? A G  24  B C 103 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog25 hydrog ?   ? A C  16 N3    ? ? ? 1_555 B G 1  N1  ? ? A C  25  B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog26 hydrog ?   ? A C  16 N4    ? ? ? 1_555 B G 1  O6  ? ? A C  25  B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog27 hydrog ?   ? A C  16 O2    ? ? ? 1_555 B G 1  N2  ? ? A C  25  B G 102 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog28 hydrog ?   ? B C  8  N3    ? ? ? 1_555 B G 17 N1  ? ? B C  109 B G 118 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog29 hydrog ?   ? B C  8  N4    ? ? ? 1_555 B G 17 O6  ? ? B C  109 B G 118 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog30 hydrog ?   ? B C  8  O2    ? ? ? 1_555 B G 17 N2  ? ? B C  109 B G 118 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog31 hydrog ?   ? B U  9  N3    ? ? ? 1_555 B A 16 N1  ? ? B U  110 B A 117 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog32 hydrog ?   ? B U  9  O4    ? ? ? 1_555 B A 16 N6  ? ? B U  110 B A 117 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog33 hydrog ?   ? B C  10 N3    ? ? ? 1_555 B G 15 N1  ? ? B C  111 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog34 hydrog ?   ? B C  10 N4    ? ? ? 1_555 B G 15 O6  ? ? B C  111 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog35 hydrog ?   ? B C  10 O2    ? ? ? 1_555 B G 15 N2  ? ? B C  111 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK  ?     ? ? 
hydrog36 hydrog ?   ? B G  11 N2    ? ? ? 1_555 B A 14 N7  ? ? B G  112 B A 115 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ?     ? ? 
# 
loop_
_struct_conn_type.id 
_struct_conn_type.criteria 
_struct_conn_type.reference 
covale ? ? 
metalc ? ? 
hydrog ? ? 
# 
_pdbx_struct_conn_angle.id                    1 
_pdbx_struct_conn_angle.ptnr1_label_atom_id   OP2 
_pdbx_struct_conn_angle.ptnr1_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr1_label_asym_id   A 
_pdbx_struct_conn_angle.ptnr1_label_comp_id   A 
_pdbx_struct_conn_angle.ptnr1_label_seq_id    13 
_pdbx_struct_conn_angle.ptnr1_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr1_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr1_auth_comp_id    A 
_pdbx_struct_conn_angle.ptnr1_auth_seq_id     22 
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr1_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr2_label_atom_id   CO 
_pdbx_struct_conn_angle.ptnr2_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr2_label_asym_id   E 
_pdbx_struct_conn_angle.ptnr2_label_comp_id   CO 
_pdbx_struct_conn_angle.ptnr2_label_seq_id    . 
_pdbx_struct_conn_angle.ptnr2_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr2_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr2_auth_comp_id    CO 
_pdbx_struct_conn_angle.ptnr2_auth_seq_id     5 
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr2_symmetry        1_555 
_pdbx_struct_conn_angle.ptnr3_label_atom_id   N7 
_pdbx_struct_conn_angle.ptnr3_label_alt_id    ? 
_pdbx_struct_conn_angle.ptnr3_label_asym_id   A 
_pdbx_struct_conn_angle.ptnr3_label_comp_id   G 
_pdbx_struct_conn_angle.ptnr3_label_seq_id    14 
_pdbx_struct_conn_angle.ptnr3_auth_atom_id    ? 
_pdbx_struct_conn_angle.ptnr3_auth_asym_id    A 
_pdbx_struct_conn_angle.ptnr3_auth_comp_id    G 
_pdbx_struct_conn_angle.ptnr3_auth_seq_id     23 
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code    ? 
_pdbx_struct_conn_angle.ptnr3_symmetry        1_555 
_pdbx_struct_conn_angle.value                 84.3 
_pdbx_struct_conn_angle.value_esd             ? 
# 
loop_
_struct_site.id 
_struct_site.pdbx_evidence_code 
_struct_site.pdbx_auth_asym_id 
_struct_site.pdbx_auth_comp_id 
_struct_site.pdbx_auth_seq_id 
_struct_site.pdbx_auth_ins_code 
_struct_site.pdbx_num_residues 
_struct_site.details 
AC1 Software A CO 1 ? 1 'BINDING SITE FOR RESIDUE CO A 1' 
AC2 Software A CO 2 ? 1 'BINDING SITE FOR RESIDUE CO A 2' 
AC3 Software B CO 3 ? 1 'BINDING SITE FOR RESIDUE CO B 3' 
AC4 Software B CO 4 ? 1 'BINDING SITE FOR RESIDUE CO B 4' 
AC5 Software A CO 5 ? 2 'BINDING SITE FOR RESIDUE CO A 5' 
# 
loop_
_struct_site_gen.id 
_struct_site_gen.site_id 
_struct_site_gen.pdbx_num_res 
_struct_site_gen.label_comp_id 
_struct_site_gen.label_asym_id 
_struct_site_gen.label_seq_id 
_struct_site_gen.pdbx_auth_ins_code 
_struct_site_gen.auth_comp_id 
_struct_site_gen.auth_asym_id 
_struct_site_gen.auth_seq_id 
_struct_site_gen.label_atom_id 
_struct_site_gen.label_alt_id 
_struct_site_gen.symmetry 
_struct_site_gen.details 
1 AC1 1 G A 5  ? G A 14  . ? 1_555 ? 
2 AC2 1 G A 9  ? G A 18  . ? 1_555 ? 
3 AC3 1 G B 15 ? G B 116 . ? 1_555 ? 
4 AC4 1 G B 17 ? G B 118 . ? 1_555 ? 
5 AC5 2 A A 13 ? A A 22  . ? 1_555 ? 
6 AC5 2 G A 14 ? G A 23  . ? 1_555 ? 
# 
_pdbx_validate_close_contact.id               1 
_pdbx_validate_close_contact.PDB_model_num    1 
_pdbx_validate_close_contact.auth_atom_id_1   "O2'" 
_pdbx_validate_close_contact.auth_asym_id_1   B 
_pdbx_validate_close_contact.auth_comp_id_1   C 
_pdbx_validate_close_contact.auth_seq_id_1    120 
_pdbx_validate_close_contact.PDB_ins_code_1   ? 
_pdbx_validate_close_contact.label_alt_id_1   ? 
_pdbx_validate_close_contact.auth_atom_id_2   OP1 
_pdbx_validate_close_contact.auth_asym_id_2   B 
_pdbx_validate_close_contact.auth_comp_id_2   A 
_pdbx_validate_close_contact.auth_seq_id_2    121 
_pdbx_validate_close_contact.PDB_ins_code_2   ? 
_pdbx_validate_close_contact.label_alt_id_2   ? 
_pdbx_validate_close_contact.dist             1.72 
# 
loop_
_pdbx_validate_rmsd_bond.id 
_pdbx_validate_rmsd_bond.PDB_model_num 
_pdbx_validate_rmsd_bond.auth_atom_id_1 
_pdbx_validate_rmsd_bond.auth_asym_id_1 
_pdbx_validate_rmsd_bond.auth_comp_id_1 
_pdbx_validate_rmsd_bond.auth_seq_id_1 
_pdbx_validate_rmsd_bond.PDB_ins_code_1 
_pdbx_validate_rmsd_bond.label_alt_id_1 
_pdbx_validate_rmsd_bond.auth_atom_id_2 
_pdbx_validate_rmsd_bond.auth_asym_id_2 
_pdbx_validate_rmsd_bond.auth_comp_id_2 
_pdbx_validate_rmsd_bond.auth_seq_id_2 
_pdbx_validate_rmsd_bond.PDB_ins_code_2 
_pdbx_validate_rmsd_bond.label_alt_id_2 
_pdbx_validate_rmsd_bond.bond_value 
_pdbx_validate_rmsd_bond.bond_target_value 
_pdbx_validate_rmsd_bond.bond_deviation 
_pdbx_validate_rmsd_bond.bond_standard_deviation 
_pdbx_validate_rmsd_bond.linker_flag 
1 1 "C5'" A G 11  ? ? "C4'" A G 11  ? ? 1.742 1.509 0.233  0.012 N 
2 1 C5    A G 18  ? ? N7    A G 18  ? ? 1.343 1.388 -0.045 0.006 N 
3 1 N7    A G 18  ? ? C8    A G 18  ? ? 1.348 1.305 0.043  0.006 N 
4 1 "O3'" B C 109 ? ? "C3'" B C 109 ? ? 1.332 1.417 -0.085 0.014 N 
5 1 "C4'" B A 121 ? ? "C3'" B A 121 ? ? 1.642 1.527 0.115  0.011 N 
6 1 "O4'" B A 121 ? ? "C1'" B A 121 ? ? 1.231 1.412 -0.181 0.013 N 
# 
loop_
_pdbx_validate_rmsd_angle.id 
_pdbx_validate_rmsd_angle.PDB_model_num 
_pdbx_validate_rmsd_angle.auth_atom_id_1 
_pdbx_validate_rmsd_angle.auth_asym_id_1 
_pdbx_validate_rmsd_angle.auth_comp_id_1 
_pdbx_validate_rmsd_angle.auth_seq_id_1 
_pdbx_validate_rmsd_angle.PDB_ins_code_1 
_pdbx_validate_rmsd_angle.label_alt_id_1 
_pdbx_validate_rmsd_angle.auth_atom_id_2 
_pdbx_validate_rmsd_angle.auth_asym_id_2 
_pdbx_validate_rmsd_angle.auth_comp_id_2 
_pdbx_validate_rmsd_angle.auth_seq_id_2 
_pdbx_validate_rmsd_angle.PDB_ins_code_2 
_pdbx_validate_rmsd_angle.label_alt_id_2 
_pdbx_validate_rmsd_angle.auth_atom_id_3 
_pdbx_validate_rmsd_angle.auth_asym_id_3 
_pdbx_validate_rmsd_angle.auth_comp_id_3 
_pdbx_validate_rmsd_angle.auth_seq_id_3 
_pdbx_validate_rmsd_angle.PDB_ins_code_3 
_pdbx_validate_rmsd_angle.label_alt_id_3 
_pdbx_validate_rmsd_angle.angle_value 
_pdbx_validate_rmsd_angle.angle_target_value 
_pdbx_validate_rmsd_angle.angle_deviation 
_pdbx_validate_rmsd_angle.angle_standard_deviation 
_pdbx_validate_rmsd_angle.linker_flag 
1  1 "C5'" A G 11  ? ? "C4'" A G 11  ? ? "O4'" A G 11  ? ? 100.19 109.10 -8.91  1.20 N 
2  1 "O4'" A G 13  ? ? "C1'" A G 13  ? ? N9    A G 13  ? ? 113.10 108.50 4.60   0.70 N 
3  1 "C4'" A U 17  ? ? "C3'" A U 17  ? ? "C2'" A U 17  ? ? 93.81  102.60 -8.79  1.00 N 
4  1 "O5'" A G 18  ? ? P     A G 18  ? ? OP2   A G 18  ? ? 94.78  105.70 -10.92 0.90 N 
5  1 C6    A G 18  ? ? N1    A G 18  ? ? C2    A G 18  ? ? 120.81 125.10 -4.29  0.60 N 
6  1 C2    A G 18  ? ? N3    A G 18  ? ? C4    A G 18  ? ? 120.37 111.90 8.47   0.50 N 
7  1 N3    A G 18  ? ? C4    A G 18  ? ? C5    A G 18  ? ? 120.30 128.60 -8.30  0.50 N 
8  1 C5    A G 18  ? ? C6    A G 18  ? ? N1    A G 18  ? ? 119.01 111.50 7.51   0.50 N 
9  1 C4    A G 18  ? ? C5    A G 18  ? ? N7    A G 18  ? ? 107.88 110.80 -2.92  0.40 N 
10 1 C5    A G 18  ? ? N7    A G 18  ? ? C8    A G 18  ? ? 108.96 104.30 4.66   0.50 N 
11 1 N7    A G 18  ? ? C8    A G 18  ? ? N9    A G 18  ? ? 108.80 113.10 -4.30  0.50 N 
12 1 N3    A G 18  ? ? C4    A G 18  ? ? N9    A G 18  ? ? 132.87 126.00 6.87   0.60 N 
13 1 C5    A G 18  ? ? C6    A G 18  ? ? O6    A G 18  ? ? 120.71 128.60 -7.89  0.60 N 
14 1 "O5'" B U 110 ? ? P     B U 110 ? ? OP2   B U 110 ? ? 118.92 110.70 8.22   1.20 N 
15 1 N9    B A 114 ? ? "C1'" B A 114 ? ? "C2'" B A 114 ? ? 122.03 114.00 8.03   1.30 N 
16 1 "O3'" B G 116 ? ? P     B A 117 ? ? "O5'" B A 117 ? ? 91.96  104.00 -12.04 1.90 Y 
17 1 "O5'" B A 117 ? ? P     B A 117 ? ? OP2   B A 117 ? ? 118.61 110.70 7.91   1.20 N 
18 1 N1    B G 118 ? ? C6    B G 118 ? ? O6    B G 118 ? ? 115.99 119.90 -3.91  0.60 N 
19 1 "C5'" B C 120 ? ? "C4'" B C 120 ? ? "C3'" B C 120 ? ? 128.01 116.00 12.01  1.60 N 
20 1 "C1'" B C 120 ? ? "O4'" B C 120 ? ? "C4'" B C 120 ? ? 101.90 109.70 -7.80  0.70 N 
21 1 "C2'" B C 120 ? ? "C3'" B C 120 ? ? "O3'" B C 120 ? ? 90.30  109.50 -19.20 2.20 N 
22 1 "C4'" B C 120 ? ? "C3'" B C 120 ? ? "C2'" B C 120 ? ? 91.57  102.60 -11.03 1.00 N 
23 1 "C4'" B A 121 ? ? "C3'" B A 121 ? ? "C2'" B A 121 ? ? 86.55  102.60 -16.05 1.00 N 
24 1 "O4'" B A 121 ? ? "C1'" B A 121 ? ? N9    B A 121 ? ? 118.17 108.50 9.67   0.70 N 
25 1 N3    B C 122 ? ? C2    B C 122 ? ? O2    B C 122 ? ? 117.59 121.90 -4.31  0.70 N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_ordinal 
A  OP3    O  N N 1   
A  P      P  N N 2   
A  OP1    O  N N 3   
A  OP2    O  N N 4   
A  "O5'"  O  N N 5   
A  "C5'"  C  N N 6   
A  "C4'"  C  N R 7   
A  "O4'"  O  N N 8   
A  "C3'"  C  N S 9   
A  "O3'"  O  N N 10  
A  "C2'"  C  N R 11  
A  "O2'"  O  N N 12  
A  "C1'"  C  N R 13  
A  N9     N  Y N 14  
A  C8     C  Y N 15  
A  N7     N  Y N 16  
A  C5     C  Y N 17  
A  C6     C  Y N 18  
A  N6     N  N N 19  
A  N1     N  Y N 20  
A  C2     C  Y N 21  
A  N3     N  Y N 22  
A  C4     C  Y N 23  
A  HOP3   H  N N 24  
A  HOP2   H  N N 25  
A  "H5'"  H  N N 26  
A  "H5''" H  N N 27  
A  "H4'"  H  N N 28  
A  "H3'"  H  N N 29  
A  "HO3'" H  N N 30  
A  "H2'"  H  N N 31  
A  "HO2'" H  N N 32  
A  "H1'"  H  N N 33  
A  H8     H  N N 34  
A  H61    H  N N 35  
A  H62    H  N N 36  
A  H2     H  N N 37  
C  OP3    O  N N 38  
C  P      P  N N 39  
C  OP1    O  N N 40  
C  OP2    O  N N 41  
C  "O5'"  O  N N 42  
C  "C5'"  C  N N 43  
C  "C4'"  C  N R 44  
C  "O4'"  O  N N 45  
C  "C3'"  C  N S 46  
C  "O3'"  O  N N 47  
C  "C2'"  C  N R 48  
C  "O2'"  O  N N 49  
C  "C1'"  C  N R 50  
C  N1     N  N N 51  
C  C2     C  N N 52  
C  O2     O  N N 53  
C  N3     N  N N 54  
C  C4     C  N N 55  
C  N4     N  N N 56  
C  C5     C  N N 57  
C  C6     C  N N 58  
C  HOP3   H  N N 59  
C  HOP2   H  N N 60  
C  "H5'"  H  N N 61  
C  "H5''" H  N N 62  
C  "H4'"  H  N N 63  
C  "H3'"  H  N N 64  
C  "HO3'" H  N N 65  
C  "H2'"  H  N N 66  
C  "HO2'" H  N N 67  
C  "H1'"  H  N N 68  
C  H41    H  N N 69  
C  H42    H  N N 70  
C  H5     H  N N 71  
C  H6     H  N N 72  
CO CO     CO N N 73  
G  OP3    O  N N 74  
G  P      P  N N 75  
G  OP1    O  N N 76  
G  OP2    O  N N 77  
G  "O5'"  O  N N 78  
G  "C5'"  C  N N 79  
G  "C4'"  C  N R 80  
G  "O4'"  O  N N 81  
G  "C3'"  C  N S 82  
G  "O3'"  O  N N 83  
G  "C2'"  C  N R 84  
G  "O2'"  O  N N 85  
G  "C1'"  C  N R 86  
G  N9     N  Y N 87  
G  C8     C  Y N 88  
G  N7     N  Y N 89  
G  C5     C  Y N 90  
G  C6     C  N N 91  
G  O6     O  N N 92  
G  N1     N  N N 93  
G  C2     C  N N 94  
G  N2     N  N N 95  
G  N3     N  N N 96  
G  C4     C  Y N 97  
G  HOP3   H  N N 98  
G  HOP2   H  N N 99  
G  "H5'"  H  N N 100 
G  "H5''" H  N N 101 
G  "H4'"  H  N N 102 
G  "H3'"  H  N N 103 
G  "HO3'" H  N N 104 
G  "H2'"  H  N N 105 
G  "HO2'" H  N N 106 
G  "H1'"  H  N N 107 
G  H8     H  N N 108 
G  H1     H  N N 109 
G  H21    H  N N 110 
G  H22    H  N N 111 
U  OP3    O  N N 112 
U  P      P  N N 113 
U  OP1    O  N N 114 
U  OP2    O  N N 115 
U  "O5'"  O  N N 116 
U  "C5'"  C  N N 117 
U  "C4'"  C  N R 118 
U  "O4'"  O  N N 119 
U  "C3'"  C  N S 120 
U  "O3'"  O  N N 121 
U  "C2'"  C  N R 122 
U  "O2'"  O  N N 123 
U  "C1'"  C  N R 124 
U  N1     N  N N 125 
U  C2     C  N N 126 
U  O2     O  N N 127 
U  N3     N  N N 128 
U  C4     C  N N 129 
U  O4     O  N N 130 
U  C5     C  N N 131 
U  C6     C  N N 132 
U  HOP3   H  N N 133 
U  HOP2   H  N N 134 
U  "H5'"  H  N N 135 
U  "H5''" H  N N 136 
U  "H4'"  H  N N 137 
U  "H3'"  H  N N 138 
U  "HO3'" H  N N 139 
U  "H2'"  H  N N 140 
U  "HO2'" H  N N 141 
U  "H1'"  H  N N 142 
U  H3     H  N N 143 
U  H5     H  N N 144 
U  H6     H  N N 145 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
A OP3   P      sing N N 1   
A OP3   HOP3   sing N N 2   
A P     OP1    doub N N 3   
A P     OP2    sing N N 4   
A P     "O5'"  sing N N 5   
A OP2   HOP2   sing N N 6   
A "O5'" "C5'"  sing N N 7   
A "C5'" "C4'"  sing N N 8   
A "C5'" "H5'"  sing N N 9   
A "C5'" "H5''" sing N N 10  
A "C4'" "O4'"  sing N N 11  
A "C4'" "C3'"  sing N N 12  
A "C4'" "H4'"  sing N N 13  
A "O4'" "C1'"  sing N N 14  
A "C3'" "O3'"  sing N N 15  
A "C3'" "C2'"  sing N N 16  
A "C3'" "H3'"  sing N N 17  
A "O3'" "HO3'" sing N N 18  
A "C2'" "O2'"  sing N N 19  
A "C2'" "C1'"  sing N N 20  
A "C2'" "H2'"  sing N N 21  
A "O2'" "HO2'" sing N N 22  
A "C1'" N9     sing N N 23  
A "C1'" "H1'"  sing N N 24  
A N9    C8     sing Y N 25  
A N9    C4     sing Y N 26  
A C8    N7     doub Y N 27  
A C8    H8     sing N N 28  
A N7    C5     sing Y N 29  
A C5    C6     sing Y N 30  
A C5    C4     doub Y N 31  
A C6    N6     sing N N 32  
A C6    N1     doub Y N 33  
A N6    H61    sing N N 34  
A N6    H62    sing N N 35  
A N1    C2     sing Y N 36  
A C2    N3     doub Y N 37  
A C2    H2     sing N N 38  
A N3    C4     sing Y N 39  
C OP3   P      sing N N 40  
C OP3   HOP3   sing N N 41  
C P     OP1    doub N N 42  
C P     OP2    sing N N 43  
C P     "O5'"  sing N N 44  
C OP2   HOP2   sing N N 45  
C "O5'" "C5'"  sing N N 46  
C "C5'" "C4'"  sing N N 47  
C "C5'" "H5'"  sing N N 48  
C "C5'" "H5''" sing N N 49  
C "C4'" "O4'"  sing N N 50  
C "C4'" "C3'"  sing N N 51  
C "C4'" "H4'"  sing N N 52  
C "O4'" "C1'"  sing N N 53  
C "C3'" "O3'"  sing N N 54  
C "C3'" "C2'"  sing N N 55  
C "C3'" "H3'"  sing N N 56  
C "O3'" "HO3'" sing N N 57  
C "C2'" "O2'"  sing N N 58  
C "C2'" "C1'"  sing N N 59  
C "C2'" "H2'"  sing N N 60  
C "O2'" "HO2'" sing N N 61  
C "C1'" N1     sing N N 62  
C "C1'" "H1'"  sing N N 63  
C N1    C2     sing N N 64  
C N1    C6     sing N N 65  
C C2    O2     doub N N 66  
C C2    N3     sing N N 67  
C N3    C4     doub N N 68  
C C4    N4     sing N N 69  
C C4    C5     sing N N 70  
C N4    H41    sing N N 71  
C N4    H42    sing N N 72  
C C5    C6     doub N N 73  
C C5    H5     sing N N 74  
C C6    H6     sing N N 75  
G OP3   P      sing N N 76  
G OP3   HOP3   sing N N 77  
G P     OP1    doub N N 78  
G P     OP2    sing N N 79  
G P     "O5'"  sing N N 80  
G OP2   HOP2   sing N N 81  
G "O5'" "C5'"  sing N N 82  
G "C5'" "C4'"  sing N N 83  
G "C5'" "H5'"  sing N N 84  
G "C5'" "H5''" sing N N 85  
G "C4'" "O4'"  sing N N 86  
G "C4'" "C3'"  sing N N 87  
G "C4'" "H4'"  sing N N 88  
G "O4'" "C1'"  sing N N 89  
G "C3'" "O3'"  sing N N 90  
G "C3'" "C2'"  sing N N 91  
G "C3'" "H3'"  sing N N 92  
G "O3'" "HO3'" sing N N 93  
G "C2'" "O2'"  sing N N 94  
G "C2'" "C1'"  sing N N 95  
G "C2'" "H2'"  sing N N 96  
G "O2'" "HO2'" sing N N 97  
G "C1'" N9     sing N N 98  
G "C1'" "H1'"  sing N N 99  
G N9    C8     sing Y N 100 
G N9    C4     sing Y N 101 
G C8    N7     doub Y N 102 
G C8    H8     sing N N 103 
G N7    C5     sing Y N 104 
G C5    C6     sing N N 105 
G C5    C4     doub Y N 106 
G C6    O6     doub N N 107 
G C6    N1     sing N N 108 
G N1    C2     sing N N 109 
G N1    H1     sing N N 110 
G C2    N2     sing N N 111 
G C2    N3     doub N N 112 
G N2    H21    sing N N 113 
G N2    H22    sing N N 114 
G N3    C4     sing N N 115 
U OP3   P      sing N N 116 
U OP3   HOP3   sing N N 117 
U P     OP1    doub N N 118 
U P     OP2    sing N N 119 
U P     "O5'"  sing N N 120 
U OP2   HOP2   sing N N 121 
U "O5'" "C5'"  sing N N 122 
U "C5'" "C4'"  sing N N 123 
U "C5'" "H5'"  sing N N 124 
U "C5'" "H5''" sing N N 125 
U "C4'" "O4'"  sing N N 126 
U "C4'" "C3'"  sing N N 127 
U "C4'" "H4'"  sing N N 128 
U "O4'" "C1'"  sing N N 129 
U "C3'" "O3'"  sing N N 130 
U "C3'" "C2'"  sing N N 131 
U "C3'" "H3'"  sing N N 132 
U "O3'" "HO3'" sing N N 133 
U "C2'" "O2'"  sing N N 134 
U "C2'" "C1'"  sing N N 135 
U "C2'" "H2'"  sing N N 136 
U "O2'" "HO2'" sing N N 137 
U "C1'" N1     sing N N 138 
U "C1'" "H1'"  sing N N 139 
U N1    C2     sing N N 140 
U N1    C6     sing N N 141 
U C2    O2     doub N N 142 
U C2    N3     sing N N 143 
U N3    C4     sing N N 144 
U N3    H3     sing N N 145 
U C4    O4     doub N N 146 
U C4    C5     sing N N 147 
U C5    C6     doub N N 148 
U C5    H5     sing N N 149 
U C6    H6     sing N N 150 
# 
loop_
_ndb_struct_conf_na.entry_id 
_ndb_struct_conf_na.feature 
1Q29 'double helix'         
1Q29 'a-form double helix'  
1Q29 tetraloop              
1Q29 'mismatched base pair' 
1Q29 'three-way junction'   
# 
loop_
_ndb_struct_na_base_pair.model_number 
_ndb_struct_na_base_pair.i_label_asym_id 
_ndb_struct_na_base_pair.i_label_comp_id 
_ndb_struct_na_base_pair.i_label_seq_id 
_ndb_struct_na_base_pair.i_symmetry 
_ndb_struct_na_base_pair.j_label_asym_id 
_ndb_struct_na_base_pair.j_label_comp_id 
_ndb_struct_na_base_pair.j_label_seq_id 
_ndb_struct_na_base_pair.j_symmetry 
_ndb_struct_na_base_pair.shear 
_ndb_struct_na_base_pair.stretch 
_ndb_struct_na_base_pair.stagger 
_ndb_struct_na_base_pair.buckle 
_ndb_struct_na_base_pair.propeller 
_ndb_struct_na_base_pair.opening 
_ndb_struct_na_base_pair.pair_number 
_ndb_struct_na_base_pair.pair_name 
_ndb_struct_na_base_pair.i_auth_asym_id 
_ndb_struct_na_base_pair.i_auth_seq_id 
_ndb_struct_na_base_pair.i_PDB_ins_code 
_ndb_struct_na_base_pair.j_auth_asym_id 
_ndb_struct_na_base_pair.j_auth_seq_id 
_ndb_struct_na_base_pair.j_PDB_ins_code 
_ndb_struct_na_base_pair.hbond_type_28 
_ndb_struct_na_base_pair.hbond_type_12 
1 A G 1  1_555 A C 17 1_555 -0.132 0.079  0.299  15.266  -18.011 -2.138  1  A_G10:C26_A   A 10  ? A 26  ? 19 1  
1 B G 1  1_555 A C 16 1_555 -0.509 0.099  0.433  6.452   -8.451  -4.787  2  B_G102:C25_A  B 102 ? A 25  ? 19 1  
1 B C 2  1_555 A G 15 1_555 -0.207 -0.112 0.069  3.562   -15.645 -1.864  3  B_C103:G24_A  B 103 ? A 24  ? 19 1  
1 B C 3  1_555 A G 14 1_555 0.177  0.076  0.064  2.261   -13.455 5.665   4  B_C104:G23_A  B 104 ? A 23  ? 19 1  
1 B G 4  1_555 A A 13 1_555 6.942  -4.443 -0.075 9.922   -15.934 -5.210  5  B_G105:A22_A  B 105 ? A 22  ? 11 10 
1 B A 5  1_555 A G 12 1_555 -6.882 -4.357 0.097  -24.878 18.921  1.176   6  B_A106:G21_A  B 106 ? A 21  ? 11 10 
1 B A 6  1_555 A U 11 1_555 -6.458 -0.645 0.130  14.159  -2.005  45.065  7  B_A107:U20_A  B 107 ? A 20  ? ?  5  
1 B C 8  1_555 B G 17 1_555 0.664  0.021  0.456  -0.418  -19.246 -5.250  8  B_C109:G118_B B 109 ? B 118 ? 19 1  
1 B U 9  1_555 B A 16 1_555 -0.702 0.133  0.226  5.680   -9.031  5.179   9  B_U110:A117_B B 110 ? B 117 ? 20 1  
1 B C 10 1_555 B G 15 1_555 0.748  -0.178 -0.224 15.951  -8.879  4.291   10 B_C111:G116_B B 111 ? B 116 ? 19 1  
1 B G 11 1_555 B A 14 1_555 7.501  -5.611 0.309  -2.885  -18.874 -43.914 11 B_G112:A115_B B 112 ? B 115 ? ?  ?  
1 A G 2  1_555 B C 24 1_555 0.350  0.460  0.160  -3.760  -23.123 1.135   12 A_G11:C125_B  A 11  ? B 125 ? ?  1  
1 A U 3  1_555 B A 23 1_555 0.288  0.424  0.273  4.806   -12.952 5.882   13 A_U12:A124_B  A 12  ? B 124 ? ?  ?  
1 A G 4  1_555 B C 22 1_555 0.249  -0.082 0.369  3.544   -11.667 -0.101  14 A_G13:C123_B  A 13  ? B 123 ? 19 1  
1 A G 5  1_555 B C 21 1_555 0.192  -0.061 -0.120 -10.734 -17.890 3.641   15 A_G14:C122_B  A 14  ? B 122 ? 19 1  
1 A U 6  1_555 B A 20 1_555 0.408  -0.009 0.465  -10.552 -8.295  0.429   16 A_U15:A121_B  A 15  ? B 121 ? 20 1  
# 
loop_
_ndb_struct_na_base_pair_step.model_number 
_ndb_struct_na_base_pair_step.i_label_asym_id_1 
_ndb_struct_na_base_pair_step.i_label_comp_id_1 
_ndb_struct_na_base_pair_step.i_label_seq_id_1 
_ndb_struct_na_base_pair_step.i_symmetry_1 
_ndb_struct_na_base_pair_step.j_label_asym_id_1 
_ndb_struct_na_base_pair_step.j_label_comp_id_1 
_ndb_struct_na_base_pair_step.j_label_seq_id_1 
_ndb_struct_na_base_pair_step.j_symmetry_1 
_ndb_struct_na_base_pair_step.i_label_asym_id_2 
_ndb_struct_na_base_pair_step.i_label_comp_id_2 
_ndb_struct_na_base_pair_step.i_label_seq_id_2 
_ndb_struct_na_base_pair_step.i_symmetry_2 
_ndb_struct_na_base_pair_step.j_label_asym_id_2 
_ndb_struct_na_base_pair_step.j_label_comp_id_2 
_ndb_struct_na_base_pair_step.j_label_seq_id_2 
_ndb_struct_na_base_pair_step.j_symmetry_2 
_ndb_struct_na_base_pair_step.shift 
_ndb_struct_na_base_pair_step.slide 
_ndb_struct_na_base_pair_step.rise 
_ndb_struct_na_base_pair_step.tilt 
_ndb_struct_na_base_pair_step.roll 
_ndb_struct_na_base_pair_step.twist 
_ndb_struct_na_base_pair_step.x_displacement 
_ndb_struct_na_base_pair_step.y_displacement 
_ndb_struct_na_base_pair_step.helical_rise 
_ndb_struct_na_base_pair_step.inclination 
_ndb_struct_na_base_pair_step.tip 
_ndb_struct_na_base_pair_step.helical_twist 
_ndb_struct_na_base_pair_step.step_number 
_ndb_struct_na_base_pair_step.step_name 
_ndb_struct_na_base_pair_step.i_auth_asym_id_1 
_ndb_struct_na_base_pair_step.i_auth_seq_id_1 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.j_auth_asym_id_1 
_ndb_struct_na_base_pair_step.j_auth_seq_id_1 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_1 
_ndb_struct_na_base_pair_step.i_auth_asym_id_2 
_ndb_struct_na_base_pair_step.i_auth_seq_id_2 
_ndb_struct_na_base_pair_step.i_PDB_ins_code_2 
_ndb_struct_na_base_pair_step.j_auth_asym_id_2 
_ndb_struct_na_base_pair_step.j_auth_seq_id_2 
_ndb_struct_na_base_pair_step.j_PDB_ins_code_2 
1 A G 1  1_555 A C 17 1_555 B G 1  1_555 A C 16 1_555 0.390  -1.599 3.388 -4.580  12.283 28.236  -5.178 -1.547 2.410  23.634 8.813 
31.075  1  AB_G10G102:C25C26_AA    A 10  ? A 26  ? B 102 ? A 25  ? 
1 B G 1  1_555 A C 16 1_555 B C 2  1_555 A G 15 1_555 0.171  -2.238 3.250 1.611   -0.782 34.962  -3.603 -0.042 3.302  -1.301 
-2.679 35.006  2  BB_G102C103:G24C25_AA   B 102 ? A 25  ? B 103 ? A 24  ? 
1 B C 2  1_555 A G 15 1_555 B C 3  1_555 A G 14 1_555 0.190  -1.980 3.289 -0.622  4.736  29.834  -4.721 -0.486 2.942  9.125  1.199 
30.205  3  BB_C103C104:G23G24_AA   B 103 ? A 24  ? B 104 ? A 23  ? 
1 B C 3  1_555 A G 14 1_555 B G 4  1_555 A A 13 1_555 -0.875 -0.516 3.431 0.389   3.099  58.178  -0.701 0.920  3.396  3.184  
-0.400 58.254  4  BB_C104G105:A22G23_AA   B 104 ? A 23  ? B 105 ? A 22  ? 
1 B G 4  1_555 A A 13 1_555 B A 5  1_555 A G 12 1_555 1.016  -1.192 3.929 4.498   0.185  -9.609  6.098  13.993 3.151  -1.034 
25.120 -10.609 5  BB_G105A106:G21A22_AA   B 105 ? A 22  ? B 106 ? A 21  ? 
1 B A 5  1_555 A G 12 1_555 B A 6  1_555 A U 11 1_555 2.911  -1.073 2.021 -19.873 10.667 30.018  -2.117 -5.367 -0.177 17.781 
33.126 37.391  6  BB_A106A107:U20G21_AA   B 106 ? A 21  ? B 107 ? A 20  ? 
1 B A 6  1_555 A U 11 1_555 B C 8  1_555 B G 17 1_555 -0.177 -1.567 6.694 -13.419 3.798  109.916 -1.047 -0.224 6.648  2.314  8.175 
110.509 7  BB_A107C109:G118U20_BA  B 107 ? A 20  ? B 109 ? B 118 ? 
1 B C 8  1_555 B G 17 1_555 B U 9  1_555 B A 16 1_555 0.236  -1.575 3.190 -3.705  -1.419 26.927  -2.998 -1.415 3.206  -3.027 7.901 
27.213  8  BB_C109U110:A117G118_BB B 109 ? B 118 ? B 110 ? B 117 ? 
1 B U 9  1_555 B A 16 1_555 B C 10 1_555 B G 15 1_555 0.068  -1.093 2.987 1.659   4.400  42.265  -1.908 0.056  2.865  6.079  
-2.293 42.514  9  BB_U110C111:G116A117_BB B 110 ? B 117 ? B 111 ? B 116 ? 
1 B C 10 1_555 B G 15 1_555 B G 11 1_555 B A 14 1_555 -4.857 -1.273 4.123 5.981   21.532 48.353  -2.968 5.872  2.785  24.809 
-6.892 52.984  10 BB_C111G112:A115G116_BB B 111 ? B 116 ? B 112 ? B 115 ? 
1 A G 2  1_555 B C 24 1_555 A U 3  1_555 B A 23 1_555 -0.163 -1.395 2.950 -1.798  4.359  37.042  -2.685 0.046  2.778  6.827  2.817 
37.331  11 AA_G11U12:A124C125_BB   A 11  ? B 125 ? A 12  ? B 124 ? 
1 A U 3  1_555 B A 23 1_555 A G 4  1_555 B C 22 1_555 -0.105 -1.404 3.182 2.643   4.546  33.144  -3.136 0.592  2.952  7.907  
-4.597 33.547  12 AA_U12G13:C123A124_BB   A 12  ? B 124 ? A 13  ? B 123 ? 
1 A G 4  1_555 B C 22 1_555 A G 5  1_555 B C 21 1_555 0.629  -2.362 3.483 4.719   9.710  28.002  -6.498 -0.279 2.606  19.189 
-9.326 29.972  13 AA_G13G14:C122C123_BB   A 13  ? B 123 ? A 14  ? B 122 ? 
1 A G 5  1_555 B C 21 1_555 A U 6  1_555 B A 20 1_555 -0.825 -2.152 3.119 -5.335  1.585  31.311  -4.206 0.569  3.103  2.908  9.788 
31.790  14 AA_G14U15:A121C122_BB   A 14  ? B 122 ? A 15  ? B 121 ? 
# 
_pdbx_initial_refinement_model.accession_code   299D 
_pdbx_initial_refinement_model.id               1 
_pdbx_initial_refinement_model.entity_id_list   ? 
_pdbx_initial_refinement_model.type             'experimental model' 
_pdbx_initial_refinement_model.source_name      PDB 
_pdbx_initial_refinement_model.details          'NDB entry urx057' 
# 
_atom_sites.entry_id                    1Q29 
_atom_sites.fract_transf_matrix[1][1]   0.014995 
_atom_sites.fract_transf_matrix[1][2]   0.008657 
_atom_sites.fract_transf_matrix[1][3]   0.000000 
_atom_sites.fract_transf_matrix[2][1]   0.000000 
_atom_sites.fract_transf_matrix[2][2]   0.017315 
_atom_sites.fract_transf_matrix[2][3]   0.000000 
_atom_sites.fract_transf_matrix[3][1]   0.000000 
_atom_sites.fract_transf_matrix[3][2]   0.000000 
_atom_sites.fract_transf_matrix[3][3]   0.007116 
_atom_sites.fract_transf_vector[1]      0.00000 
_atom_sites.fract_transf_vector[2]      0.00000 
_atom_sites.fract_transf_vector[3]      0.00000 
# 
loop_
_atom_type.symbol 
C  
CO 
N  
O  
P  
# 
loop_