HEADER    DNA                                     26-JUL-03   1Q2T              
TITLE     SOLUTION STRUCTURE OF D(5MCCTCTCC)4                                   
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3';                         
COMPND   3 CHAIN: A, B, C, D;                                                   
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES                                                       
KEYWDS    DNA SOLUTION STRUCTURE; I-MOTIF; PROTONATED CYTIDINE; HEMIPROTONATED  
KEYWDS   2 BASE-PAIRS, DNA                                                      
EXPDTA    SOLUTION NMR                                                          
AUTHOR    J.-L.LEROY                                                            
REVDAT   4   22-MAY-24 1Q2T    1       REMARK                                   
REVDAT   3   02-MAR-22 1Q2T    1       REMARK LINK                              
REVDAT   2   24-FEB-09 1Q2T    1       VERSN                                    
REVDAT   1   23-SEP-03 1Q2T    0                                                
JRNL        AUTH   J.-L.LEROY                                                   
JRNL        TITL   T.T PAIR INTERCALATION AND DUPLEX INTER-CONVERSION WITHIN    
JRNL        TITL 2 I-MOTIF TETRAMERS                                            
JRNL        REF    J.MOL.BIOL.                   V. 333   125 2003              
JRNL        REFN                   ISSN 0022-2836                               
JRNL        PMID   14516748                                                     
JRNL        DOI    10.1016/S0022-2836(03)00945-8                                
REMARK   1                                                                      
REMARK   1 REFERENCE 1                                                          
REMARK   1  AUTH   S.NONIN,J.-L.LEROY                                           
REMARK   1  TITL   STRUCTURE AND CONVERSION KINETICS OF A BI-STABLE DNA         
REMARK   1  TITL 2 I-MOTIF: BROKEN SYMMETRY IN THE [D(5MCCTCC)]4 TETRAMER.      
REMARK   1  REF    J.MOL.BIOL.                   V. 261   399 1996              
REMARK   1  REFN                   ISSN 0022-2836                               
REMARK   1  DOI    10.1006/JMBI.1996.0472                                       
REMARK   2                                                                      
REMARK   2 RESOLUTION. NOT APPLICABLE.                                          
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : X-PLOR 3.851, X-PLOR 3.851                           
REMARK   3   AUTHORS     : BRUNGER (X-PLOR), BRUNGER (X-PLOR)                   
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS:                                           
REMARK   3  THE STRUCTURE IS BASED ON A TOTAL OF 172 RESTRAINTS. 30 BASE-       
REMARK   3  PAIRING RESTRAINTS                                                  
REMARK   3  FROM HYDROGEN BONDS, 78 NOE-DISTANCE RESTRAINTS AND 36 REPULSIVE    
REMARK   3  RESTRAINTS                                                          
REMARK   3  REFLECTING THE ABSENCE OF NOE                                       
REMARK   4                                                                      
REMARK   4 1Q2T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-03.                  
REMARK 100 THE DEPOSITION ID IS D_1000019844.                                   
REMARK 210                                                                      
REMARK 210 EXPERIMENTAL DETAILS                                                 
REMARK 210  EXPERIMENT TYPE                : NMR                                
REMARK 210  TEMPERATURE           (KELVIN) : 273                                
REMARK 210  PH                             : 4.4                                
REMARK 210  IONIC STRENGTH                 : NO ADDED COUNTER-IONS              
REMARK 210  PRESSURE                       : AMBIENT                            
REMARK 210  SAMPLE CONTENTS                : 10MM DNA STRAND                    
REMARK 210                                                                      
REMARK 210  NMR EXPERIMENTS CONDUCTED      : 2D NOESY; 2D TOCSY                 
REMARK 210  SPECTROMETER FIELD STRENGTH    : 500 MHZ                            
REMARK 210  SPECTROMETER MODEL             : INOVA                              
REMARK 210  SPECTROMETER MANUFACTURER      : VARIAN                             
REMARK 210                                                                      
REMARK 210  STRUCTURE DETERMINATION.                                            
REMARK 210   SOFTWARE USED                 : NULL                               
REMARK 210   METHOD USED                   : SIMULATED ANNEALING                
REMARK 210                                                                      
REMARK 210 CONFORMERS, NUMBER CALCULATED   : 10                                 
REMARK 210 CONFORMERS, NUMBER SUBMITTED    : 1                                  
REMARK 210 CONFORMERS, SELECTION CRITERIA  : BACK CALCULATED DATA AGREE WITH    
REMARK 210                                   EXPERIMENTAL NOESY SPECTRUM        
REMARK 210                                                                      
REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL                
REMARK 210                                                                      
REMARK 210 REMARK: NULL                                                         
REMARK 215                                                                      
REMARK 215 NMR STUDY                                                            
REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION           
REMARK 215 NMR DATA.  PROTEIN DATA BANK CONVENTIONS REQUIRE THAT                
REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON              
REMARK 215 THESE RECORDS ARE MEANINGLESS.                                       
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D                            
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES                                       
REMARK 500                                                                      
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES              
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE               
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN               
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                 
REMARK 500                                                                      
REMARK 500 STANDARD TABLE:                                                      
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)              
REMARK 500                                                                      
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999                        
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996                     
REMARK 500                                                                      
REMARK 500  M RES CSSEQI ATM1   ATM2   ATM3                                     
REMARK 500     DC A   2   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DC A   2   C2  -  N3  -  C4  ANGL. DEV. =   3.3 DEGREES          
REMARK 500     DT A   3   O4' -  C1' -  N1  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DC A   4   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DC A   4   C2  -  N3  -  C4  ANGL. DEV. =   3.5 DEGREES          
REMARK 500     DC A   4   N1  -  C2  -  O2  ANGL. DEV. =   4.0 DEGREES          
REMARK 500     DT A   5   O4' -  C1' -  N1  ANGL. DEV. =   1.9 DEGREES          
REMARK 500     DC A   6   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DC A   6   C2  -  N3  -  C4  ANGL. DEV. =   3.2 DEGREES          
REMARK 500     DC A   7   O4' -  C1' -  N1  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DC A   7   C2  -  N3  -  C4  ANGL. DEV. =   3.2 DEGREES          
REMARK 500     DC B   2   O4' -  C1' -  N1  ANGL. DEV. =   2.2 DEGREES          
REMARK 500     DC B   2   C2  -  N3  -  C4  ANGL. DEV. =   3.3 DEGREES          
REMARK 500     DC B   2   N1  -  C2  -  O2  ANGL. DEV. =   3.9 DEGREES          
REMARK 500     DT B   3   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DC B   4   O4' -  C1' -  N1  ANGL. DEV. =   2.3 DEGREES          
REMARK 500     DC B   4   N1  -  C2  -  O2  ANGL. DEV. =   3.8 DEGREES          
REMARK 500     DT B   5   O4' -  C1' -  N1  ANGL. DEV. =   2.8 DEGREES          
REMARK 500     DC B   6   O4' -  C1' -  N1  ANGL. DEV. =   2.7 DEGREES          
REMARK 500     DC B   6   C2  -  N3  -  C4  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DC B   7   O4' -  C1' -  N1  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DC B   7   C2  -  N3  -  C4  ANGL. DEV. =   3.1 DEGREES          
REMARK 500     DC C   2   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DT C   3   O4' -  C1' -  N1  ANGL. DEV. =   2.7 DEGREES          
REMARK 500     DC C   4   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DT C   5   O4' -  C1' -  N1  ANGL. DEV. =   2.0 DEGREES          
REMARK 500     DC C   6   O4' -  C1' -  N1  ANGL. DEV. =   2.5 DEGREES          
REMARK 500     DC C   7   O4' -  C1' -  N1  ANGL. DEV. =   2.9 DEGREES          
REMARK 500     DC D   2   O4' -  C1' -  N1  ANGL. DEV. =   2.1 DEGREES          
REMARK 500     DT D   3   O4' -  C1' -  N1  ANGL. DEV. =   2.4 DEGREES          
REMARK 500     DC D   4   O4' -  C1' -  N1  ANGL. DEV. =   2.1 DEGREES          
REMARK 500     DT D   5   O4' -  C1' -  N1  ANGL. DEV. =   2.6 DEGREES          
REMARK 500     DC D   6   O4' -  C1' -  N1  ANGL. DEV. =   3.3 DEGREES          
REMARK 500     DC D   7   O4' -  C1' -  N1  ANGL. DEV. =   2.7 DEGREES          
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 500                                                                      
REMARK 500 GEOMETRY AND STEREOCHEMISTRY                                         
REMARK 500 SUBTOPIC: PLANAR GROUPS                                              
REMARK 500                                                                      
REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL                 
REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE                    
REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN                    
REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS                        
REMARK 500 AN RMSD GREATER THAN THIS VALUE                                      
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;               
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).                             
REMARK 500                                                                      
REMARK 500  M RES CSSEQI        RMS     TYPE                                    
REMARK 500     DC B   2         0.07    SIDE CHAIN                              
REMARK 500     DC D   2         0.06    SIDE CHAIN                              
REMARK 500                                                                      
REMARK 500 REMARK: NULL                                                         
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 1RME   RELATED DB: PDB                                   
REMARK 900 I-MOTIF TETRAMER OF 5MCCTCC                                          
DBREF  1Q2T A    1     7  PDB    1Q2T     1Q2T             1      7             
DBREF  1Q2T B    1     7  PDB    1Q2T     1Q2T             1      7             
DBREF  1Q2T C    1     7  PDB    1Q2T     1Q2T             1      7             
DBREF  1Q2T D    1     7  PDB    1Q2T     1Q2T             1      7             
SEQRES   1 A    7  MCY  DC  DT  DC  DT  DC  DC                                  
SEQRES   1 B    7  MCY  DC  DT  DC  DT  DC  DC                                  
SEQRES   1 C    7  MCY  DC  DT  DC  DT  DC  DC                                  
SEQRES   1 D    7  MCY  DC  DT  DC  DT  DC  DC                                  
MODRES 1Q2T MCY A    1   DC  5-METHYL-2'-DEOXYCYTIDINE                          
MODRES 1Q2T MCY B    1   DC  5-METHYL-2'-DEOXYCYTIDINE                          
MODRES 1Q2T MCY C    1   DC  5-METHYL-2'-DEOXYCYTIDINE                          
MODRES 1Q2T MCY D    1   DC  5-METHYL-2'-DEOXYCYTIDINE                          
HET    MCY  A   1      31                                                       
HET    MCY  B   1      31                                                       
HET    MCY  C   1      31                                                       
HET    MCY  D   1      31                                                       
HETNAM     MCY 5-METHYL-2'-DEOXYCYTIDINE                                        
FORMUL   1  MCY    4(C10 H15 N3 O4)                                             
LINK         O3' MCY A   1                 P    DC A   2     1555   1555  1.61  
LINK         O3' MCY B   1                 P    DC B   2     1555   1555  1.61  
LINK         O3' MCY C   1                 P    DC C   2     1555   1555  1.61  
LINK         O3' MCY D   1                 P    DC D   2     1555   1555  1.61  
CRYST1    1.000    1.000    1.000  90.00  90.00  90.00 P 1           1          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      1.000000  0.000000  0.000000        0.00000                         
SCALE2      0.000000  1.000000  0.000000        0.00000                         
SCALE3      0.000000  0.000000  1.000000        0.00000                         
HETATM    1  N1  MCY A   1      15.070   2.744  -2.208  1.00  0.00           N  
HETATM    2  C2  MCY A   1      15.020   1.416  -1.843  1.00  0.00           C  
HETATM    3  N3  MCY A   1      15.008   1.131  -0.519  1.00  0.00           N  
HETATM    4  C4  MCY A   1      15.046   2.100   0.411  1.00  0.00           C  
HETATM    5  C5  MCY A   1      15.099   3.398   0.041  1.00  0.00           C  
HETATM    6  C6  MCY A   1      15.108   3.718  -1.263  1.00  0.00           C  
HETATM    7  O2  MCY A   1      14.983   0.530  -2.695  1.00  0.00           O  
HETATM    8  N4  MCY A   1      15.015   1.768   1.698  1.00  0.00           N  
HETATM    9  C1' MCY A   1      15.060   3.070  -3.648  1.00  0.00           C  
HETATM   10  C2' MCY A   1      13.637   3.285  -4.126  1.00  0.00           C  
HETATM   11  C3' MCY A   1      13.539   4.716  -4.588  1.00  0.00           C  
HETATM   12  C4' MCY A   1      14.950   5.280  -4.508  1.00  0.00           C  
HETATM   13  O4' MCY A   1      15.804   4.280  -3.910  1.00  0.00           O  
HETATM   14  O3' MCY A   1      13.032   4.795  -5.927  1.00  0.00           O  
HETATM   15  C5' MCY A   1      14.973   6.572  -3.693  1.00  0.00           C  
HETATM   16  O5' MCY A   1      14.777   6.321  -2.299  1.00  0.00           O  
HETATM   17  C5A MCY A   1      15.168   4.495   1.103  1.00  0.00           C  
HETATM   18  H6  MCY A   1      15.130   4.766  -1.568  1.00  0.00           H  
HETATM   19 HN41 MCY A   1      15.034   2.486   2.409  1.00  0.00           H  
HETATM   20 HN42 MCY A   1      14.965   0.795   1.961  1.00  0.00           H  
HETATM   21  H1' MCY A   1      15.506   2.246  -4.204  1.00  0.00           H  
HETATM   22  H2' MCY A   1      12.938   3.110  -3.308  1.00  0.00           H  
HETATM   23 H2'' MCY A   1      13.417   2.611  -4.953  1.00  0.00           H  
HETATM   24  H3' MCY A   1      12.889   5.270  -3.907  1.00  0.00           H  
HETATM   25  H4' MCY A   1      15.305   5.490  -5.517  1.00  0.00           H  
HETATM   26  H5' MCY A   1      15.936   7.063  -3.834  1.00  0.00           H  
HETATM   27 H5'' MCY A   1      14.182   7.232  -4.050  1.00  0.00           H  
HETATM   28 HO5' MCY A   1      14.067   6.894  -2.002  1.00  0.00           H  
HETATM   29 H5A1 MCY A   1      14.243   4.501   1.680  1.00  0.00           H  
HETATM   30 H5A2 MCY A   1      15.300   5.463   0.618  1.00  0.00           H  
HETATM   31 H5A3 MCY A   1      16.010   4.305   1.768  1.00  0.00           H