data_1Q3C # _entry.id 1Q3C # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q3C pdb_00001q3c 10.2210/pdb1q3c/pdb RCSB RCSB019863 ? ? WWPDB D_1000019863 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Q39 ;Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The WT enzyme at 2.8 resolution. ; unspecified PDB 1Q3B 'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The R252A mutant at 2.05 resolution.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q3C _pdbx_database_status.recvd_initial_deposition_date 2003-07-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Golan, G.' 1 'Zharkov, D.O.' 2 'Feinberg, H.' 3 'Fernandes, A.S.' 4 'Zaika, E.I.' 5 'Kycia, J.H.' 6 'Grollman, A.P.' 7 'Shoham, G.' 8 # _citation.id primary _citation.title 'Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 33 _citation.page_first 5006 _citation.page_last 5016 _citation.year 2005 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 16145054 _citation.pdbx_database_id_DOI 10.1093/nar/gki796 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Golan, G.' 1 ? primary 'Zharkov, D.O.' 2 ? primary 'Feinberg, H.' 3 ? primary 'Fernandes, A.S.' 4 ? primary 'Zaika, E.I.' 5 ? primary 'Kycia, J.H.' 6 ? primary 'Grollman, A.P.' 7 ? primary 'Shoham, G.' 8 ? # _cell.entry_id 1Q3C _cell.length_a 57.779 _cell.length_b 81.067 _cell.length_c 169.935 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q3C _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Endonuclease VIII' 29756.959 1 3.2.2.- E2A ? ? 2 non-polymer syn 'ZINC ION' 65.409 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 3 ? ? ? ? 5 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PAGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; _entity_poly.pdbx_seq_one_letter_code_can ;PAGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKTYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLRPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 ALA n 1 3 GLY n 1 4 PRO n 1 5 GLU n 1 6 ILE n 1 7 ARG n 1 8 ARG n 1 9 ALA n 1 10 ALA n 1 11 ASP n 1 12 ASN n 1 13 LEU n 1 14 GLU n 1 15 ALA n 1 16 ALA n 1 17 ILE n 1 18 LYS n 1 19 GLY n 1 20 LYS n 1 21 PRO n 1 22 LEU n 1 23 THR n 1 24 ASP n 1 25 VAL n 1 26 TRP n 1 27 PHE n 1 28 ALA n 1 29 PHE n 1 30 PRO n 1 31 GLN n 1 32 LEU n 1 33 LYS n 1 34 THR n 1 35 TYR n 1 36 GLN n 1 37 SER n 1 38 GLN n 1 39 LEU n 1 40 ILE n 1 41 GLY n 1 42 GLN n 1 43 HIS n 1 44 VAL n 1 45 THR n 1 46 HIS n 1 47 VAL n 1 48 GLU n 1 49 THR n 1 50 ARG n 1 51 GLY n 1 52 LYS n 1 53 ALA n 1 54 LEU n 1 55 LEU n 1 56 THR n 1 57 HIS n 1 58 PHE n 1 59 SER n 1 60 ASN n 1 61 ASP n 1 62 LEU n 1 63 THR n 1 64 LEU n 1 65 TYR n 1 66 SER n 1 67 HIS n 1 68 ASN n 1 69 GLN n 1 70 LEU n 1 71 TYR n 1 72 GLY n 1 73 VAL n 1 74 TRP n 1 75 ARG n 1 76 VAL n 1 77 VAL n 1 78 ASP n 1 79 THR n 1 80 GLY n 1 81 GLU n 1 82 GLU n 1 83 PRO n 1 84 GLN n 1 85 THR n 1 86 THR n 1 87 ARG n 1 88 VAL n 1 89 LEU n 1 90 ARG n 1 91 VAL n 1 92 LYS n 1 93 LEU n 1 94 GLN n 1 95 THR n 1 96 ALA n 1 97 ASP n 1 98 LYS n 1 99 THR n 1 100 ILE n 1 101 LEU n 1 102 LEU n 1 103 TYR n 1 104 SER n 1 105 ALA n 1 106 SER n 1 107 ASP n 1 108 ILE n 1 109 GLU n 1 110 MET n 1 111 LEU n 1 112 ARG n 1 113 PRO n 1 114 GLU n 1 115 GLN n 1 116 LEU n 1 117 THR n 1 118 THR n 1 119 HIS n 1 120 PRO n 1 121 PHE n 1 122 LEU n 1 123 GLN n 1 124 ARG n 1 125 VAL n 1 126 GLY n 1 127 PRO n 1 128 ASP n 1 129 VAL n 1 130 LEU n 1 131 ASP n 1 132 PRO n 1 133 ASN n 1 134 LEU n 1 135 THR n 1 136 PRO n 1 137 GLU n 1 138 VAL n 1 139 VAL n 1 140 LYS n 1 141 GLU n 1 142 ARG n 1 143 LEU n 1 144 LEU n 1 145 SER n 1 146 PRO n 1 147 ARG n 1 148 PHE n 1 149 ARG n 1 150 ASN n 1 151 ARG n 1 152 GLN n 1 153 PHE n 1 154 ALA n 1 155 GLY n 1 156 LEU n 1 157 LEU n 1 158 LEU n 1 159 ASP n 1 160 GLN n 1 161 ALA n 1 162 PHE n 1 163 LEU n 1 164 ALA n 1 165 GLY n 1 166 LEU n 1 167 GLY n 1 168 ASN n 1 169 TYR n 1 170 LEU n 1 171 ARG n 1 172 VAL n 1 173 GLU n 1 174 ILE n 1 175 LEU n 1 176 TRP n 1 177 GLN n 1 178 VAL n 1 179 GLY n 1 180 LEU n 1 181 THR n 1 182 GLY n 1 183 ASN n 1 184 HIS n 1 185 LYS n 1 186 ALA n 1 187 LYS n 1 188 ASP n 1 189 LEU n 1 190 ASN n 1 191 ALA n 1 192 ALA n 1 193 GLN n 1 194 LEU n 1 195 ASP n 1 196 ALA n 1 197 LEU n 1 198 ALA n 1 199 HIS n 1 200 ALA n 1 201 LEU n 1 202 LEU n 1 203 GLU n 1 204 ILE n 1 205 PRO n 1 206 ARG n 1 207 PHE n 1 208 SER n 1 209 TYR n 1 210 ALA n 1 211 THR n 1 212 ARG n 1 213 GLY n 1 214 GLN n 1 215 VAL n 1 216 ASP n 1 217 GLU n 1 218 ASN n 1 219 LYS n 1 220 HIS n 1 221 HIS n 1 222 GLY n 1 223 ALA n 1 224 LEU n 1 225 PHE n 1 226 ARG n 1 227 PHE n 1 228 LYS n 1 229 VAL n 1 230 PHE n 1 231 HIS n 1 232 ARG n 1 233 ASP n 1 234 GLY n 1 235 GLU n 1 236 PRO n 1 237 CYS n 1 238 GLU n 1 239 ARG n 1 240 CYS n 1 241 GLY n 1 242 SER n 1 243 ILE n 1 244 ILE n 1 245 GLU n 1 246 LYS n 1 247 THR n 1 248 THR n 1 249 LEU n 1 250 SER n 1 251 SER n 1 252 ARG n 1 253 PRO n 1 254 PHE n 1 255 TYR n 1 256 TRP n 1 257 CYS n 1 258 PRO n 1 259 GLY n 1 260 CYS n 1 261 GLN n 1 262 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene NEI _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'B834(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET13A _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code END8_ECOLI _struct_ref.pdbx_db_accession P50465 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;PEGPEIRRAADNLEAAIKGKPLTDVWFAFPQLKPYQSQLIGQHVTHVETRGKALLTHFSNDLTLYSHNQLYGVWRVVDTG EEPQTTRVLRVKLQTADKTILLYSASDIEMLTPEQLTTHPFLQRVGPDVLDPNLTPEVVKERLLSPRFRNRQFAGLLLDQ AFLAGLGNYLRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDENKHHGALFRFKVFHRDGEPCERC GSIIEKTTLSSRPFYWCPGCQH ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Q3C _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P50465 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 262 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 262 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Q3C ALA A 2 ? UNP P50465 GLU 2 'engineered mutation' 2 1 1 1Q3C THR A 34 ? UNP P50465 PRO 34 'SEE REMARK 999' 34 2 1 1Q3C ARG A 112 ? UNP P50465 THR 112 'SEE REMARK 999' 112 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 1Q3C _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.19 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '25% PEG 400, 0.1M Tris-HCl pH 8.0, 0.2M MgCl2, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MAR CCD 165 mm' _diffrn_detector.pdbx_collection_date 2001-12-23 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.102 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 5ID-B' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 5ID-B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.102 # _reflns.entry_id 1Q3C _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30 _reflns.d_resolution_high 2.3 _reflns.number_obs 17458 _reflns.number_all 17458 _reflns.percent_possible_obs 91.7 _reflns.pdbx_Rmerge_I_obs 0.062 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 37.4 _reflns.pdbx_redundancy 3.24 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.29 _reflns_shell.d_res_low 2.33 _reflns_shell.percent_possible_all 88.2 _reflns_shell.Rmerge_I_obs 0.487 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 864 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Q3C _refine.ls_number_reflns_obs 15556 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 26.69 _refine.ls_d_res_high 2.30 _refine.ls_percent_reflns_obs 85.6 _refine.ls_R_factor_obs 0.245 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.245 _refine.ls_R_factor_R_free 0.304 _refine.ls_R_factor_R_free_error 0.008 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.9 _refine.ls_number_reflns_R_free 1542 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 59.3 _refine.aniso_B[1][1] -22.85 _refine.aniso_B[2][2] 42.94 _refine.aniso_B[3][3] -20.09 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.335592 _refine.solvent_model_param_bsol 56.0142 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ;PDB code 1Q3B Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The R252A mutant at 2.05 resolution. ; _refine.pdbx_method_to_determine_struct 'AB INITIO PHASING' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Q3C _refine_analyze.Luzzati_coordinate_error_obs 0.36 _refine_analyze.Luzzati_sigma_a_obs 0.58 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.46 _refine_analyze.Luzzati_sigma_a_free 0.72 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1972 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 21 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 2068 _refine_hist.d_res_high 2.30 _refine_hist.d_res_low 26.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 23.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.80 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.32 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.21 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.95 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.00 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.30 _refine_ls_shell.d_res_low 2.44 _refine_ls_shell.number_reflns_R_work 1969 _refine_ls_shell.R_factor_R_work 0.422 _refine_ls_shell.percent_reflns_obs 74.3 _refine_ls_shell.R_factor_R_free 0.465 _refine_ls_shell.R_factor_R_free_error 0.031 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 220 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' 4 GOL.PAR GOL.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1Q3C _struct.title 'Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The E2A mutant at 2.3 resolution.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q3C _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text hydrolase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 6 ? LYS A 18 ? ILE A 6 LYS A 18 1 ? 13 HELX_P HELX_P2 2 PHE A 29 ? THR A 34 ? PHE A 29 THR A 34 5 ? 6 HELX_P HELX_P3 3 TYR A 35 ? ILE A 40 ? TYR A 35 ILE A 40 1 ? 6 HELX_P HELX_P4 4 ARG A 112 ? HIS A 119 ? ARG A 112 HIS A 119 1 ? 8 HELX_P HELX_P5 5 PHE A 121 ? VAL A 125 ? PHE A 121 VAL A 125 5 ? 5 HELX_P HELX_P6 6 THR A 135 ? SER A 145 ? THR A 135 SER A 145 1 ? 11 HELX_P HELX_P7 7 GLN A 152 ? LEU A 157 ? GLN A 152 LEU A 157 1 ? 6 HELX_P HELX_P8 8 GLY A 167 ? GLY A 179 ? GLY A 167 GLY A 179 1 ? 13 HELX_P HELX_P9 9 LYS A 185 ? LEU A 189 ? LYS A 185 LEU A 189 5 ? 5 HELX_P HELX_P10 10 ASN A 190 ? ALA A 210 ? ASN A 190 ALA A 210 1 ? 21 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A HIS 184 NE2 ? ? ? 1_555 C MG . MG ? ? A HIS 184 A MG 302 1_555 ? ? ? ? ? ? ? 2.310 ? ? metalc2 metalc ? ? A ASP 195 OD1 ? ? ? 2_555 D MG . MG ? ? A ASP 195 A MG 303 1_555 ? ? ? ? ? ? ? 1.764 ? ? metalc3 metalc ? ? A ASP 195 OD2 ? ? ? 2_555 D MG . MG ? ? A ASP 195 A MG 303 1_555 ? ? ? ? ? ? ? 2.856 ? ? metalc4 metalc ? ? A HIS 199 NE2 ? ? ? 2_555 D MG . MG ? ? A HIS 199 A MG 303 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc5 metalc ? ? A HIS 220 NE2 ? ? ? 1_555 D MG . MG ? ? A HIS 220 A MG 303 1_555 ? ? ? ? ? ? ? 1.866 ? ? metalc6 metalc ? ? A CYS 237 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 237 A ZN 301 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc7 metalc ? ? A CYS 240 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 240 A ZN 301 1_555 ? ? ? ? ? ? ? 2.398 ? ? metalc8 metalc ? ? A CYS 257 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 257 A ZN 301 1_555 ? ? ? ? ? ? ? 2.201 ? ? metalc9 metalc ? ? A CYS 260 SG ? ? ? 1_555 B ZN . ZN ? ? A CYS 260 A ZN 301 1_555 ? ? ? ? ? ? ? 2.215 ? ? metalc10 metalc ? ? A HIS 262 O ? ? ? 1_555 C MG . MG ? ? A HIS 262 A MG 302 1_555 ? ? ? ? ? ? ? 1.985 ? ? metalc11 metalc ? ? A HIS 262 OXT ? ? ? 1_555 C MG . MG ? ? A HIS 262 A MG 302 1_555 ? ? ? ? ? ? ? 3.095 ? ? metalc12 metalc ? ? A HIS 262 NE2 ? ? ? 3_555 C MG . MG ? ? A HIS 262 A MG 302 1_555 ? ? ? ? ? ? ? 2.339 ? ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 302 A HOH 479 1_555 ? ? ? ? ? ? ? 2.240 ? ? metalc14 metalc ? ? D MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 303 A HOH 452 1_555 ? ? ? ? ? ? ? 1.906 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 4 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 24 ? PHE A 27 ? ASP A 24 PHE A 27 A 2 LEU A 89 ? GLN A 94 ? LEU A 89 GLN A 94 A 3 LYS A 98 ? TYR A 103 ? LYS A 98 TYR A 103 A 4 VAL A 73 ? ASP A 78 ? VAL A 73 ASP A 78 B 1 VAL A 44 ? ARG A 50 ? VAL A 44 ARG A 50 B 2 ALA A 53 ? PHE A 58 ? ALA A 53 PHE A 58 B 3 THR A 63 ? HIS A 67 ? THR A 63 HIS A 67 B 4 ASP A 107 ? LEU A 111 ? ASP A 107 LEU A 111 C 1 GLU A 245 ? LYS A 246 ? GLU A 245 LYS A 246 C 2 TYR A 255 ? TRP A 256 ? TYR A 255 TRP A 256 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TRP A 26 ? N TRP A 26 O LYS A 92 ? O LYS A 92 A 2 3 N LEU A 93 ? N LEU A 93 O ILE A 100 ? O ILE A 100 A 3 4 O LEU A 101 ? O LEU A 101 N ARG A 75 ? N ARG A 75 B 1 2 N GLU A 48 ? N GLU A 48 O LEU A 55 ? O LEU A 55 B 2 3 N THR A 56 ? N THR A 56 O LEU A 64 ? O LEU A 64 B 3 4 N TYR A 65 ? N TYR A 65 O GLU A 109 ? O GLU A 109 C 1 2 N GLU A 245 ? N GLU A 245 O TRP A 256 ? O TRP A 256 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 301 ? 4 'BINDING SITE FOR RESIDUE ZN A 301' AC2 Software A MG 302 ? 4 'BINDING SITE FOR RESIDUE MG A 302' AC3 Software A MG 303 ? 4 'BINDING SITE FOR RESIDUE MG A 303' AC4 Software A GOL 351 ? 5 'BINDING SITE FOR RESIDUE GOL A 351' AC5 Software A GOL 352 ? 7 'BINDING SITE FOR RESIDUE GOL A 352' AC6 Software A GOL 353 ? 6 'BINDING SITE FOR RESIDUE GOL A 353' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 237 ? CYS A 237 . ? 1_555 ? 2 AC1 4 CYS A 240 ? CYS A 240 . ? 1_555 ? 3 AC1 4 CYS A 257 ? CYS A 257 . ? 1_555 ? 4 AC1 4 CYS A 260 ? CYS A 260 . ? 1_555 ? 5 AC2 4 HIS A 184 ? HIS A 184 . ? 1_555 ? 6 AC2 4 HIS A 262 ? HIS A 262 . ? 3_555 ? 7 AC2 4 HIS A 262 ? HIS A 262 . ? 1_555 ? 8 AC2 4 HOH H . ? HOH A 479 . ? 1_555 ? 9 AC3 4 ASP A 195 ? ASP A 195 . ? 2_555 ? 10 AC3 4 HIS A 199 ? HIS A 199 . ? 2_555 ? 11 AC3 4 HIS A 220 ? HIS A 220 . ? 1_555 ? 12 AC3 4 HOH H . ? HOH A 452 . ? 1_555 ? 13 AC4 5 ASN A 12 ? ASN A 12 . ? 1_555 ? 14 AC4 5 ASN A 12 ? ASN A 12 . ? 2_555 ? 15 AC4 5 VAL A 76 ? VAL A 76 . ? 1_555 ? 16 AC4 5 HOH H . ? HOH A 470 . ? 1_555 ? 17 AC4 5 HOH H . ? HOH A 478 . ? 1_555 ? 18 AC5 7 GLN A 160 ? GLN A 160 . ? 1_555 ? 19 AC5 7 LEU A 163 ? LEU A 163 . ? 1_555 ? 20 AC5 7 ALA A 164 ? ALA A 164 . ? 1_555 ? 21 AC5 7 GLY A 165 ? GLY A 165 . ? 1_555 ? 22 AC5 7 LEU A 166 ? LEU A 166 . ? 1_555 ? 23 AC5 7 GOL G . ? GOL A 353 . ? 1_555 ? 24 AC5 7 HOH H . ? HOH A 429 . ? 1_555 ? 25 AC6 6 LEU A 158 ? LEU A 158 . ? 1_555 ? 26 AC6 6 LEU A 166 ? LEU A 166 . ? 1_555 ? 27 AC6 6 GLY A 167 ? GLY A 167 . ? 1_555 ? 28 AC6 6 ASN A 168 ? ASN A 168 . ? 1_555 ? 29 AC6 6 GOL F . ? GOL A 352 . ? 1_555 ? 30 AC6 6 HOH H . ? HOH A 473 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Q3C _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Q3C _atom_sites.fract_transf_matrix[1][1] 0.017307 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012335 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.005885 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 ? ? ? A . n A 1 2 ALA 2 2 2 ALA ALA A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 ILE 6 6 6 ILE ALA A . n A 1 7 ARG 7 7 7 ARG ARG A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 ALA 9 9 9 ALA ALA A . n A 1 10 ALA 10 10 10 ALA ALA A . n A 1 11 ASP 11 11 11 ASP ALA A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 LEU 13 13 13 LEU LEU A . n A 1 14 GLU 14 14 14 GLU GLU A . n A 1 15 ALA 15 15 15 ALA ALA A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 PRO 21 21 21 PRO PRO A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 VAL 25 25 25 VAL VAL A . n A 1 26 TRP 26 26 26 TRP TRP A . n A 1 27 PHE 27 27 27 PHE PHE A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 PRO 30 30 30 PRO PRO A . n A 1 31 GLN 31 31 31 GLN GLN A . n A 1 32 LEU 32 32 32 LEU LEU A . n A 1 33 LYS 33 33 33 LYS LYS A . n A 1 34 THR 34 34 34 THR THR A . n A 1 35 TYR 35 35 35 TYR TYR A . n A 1 36 GLN 36 36 36 GLN GLN A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 GLN 38 38 38 GLN GLN A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 ILE 40 40 40 ILE ILE A . n A 1 41 GLY 41 41 41 GLY GLY A . n A 1 42 GLN 42 42 42 GLN GLN A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 THR 45 45 45 THR THR A . n A 1 46 HIS 46 46 46 HIS HIS A . n A 1 47 VAL 47 47 47 VAL VAL A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ARG 50 50 50 ARG ARG A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 LYS 52 52 52 LYS LYS A . n A 1 53 ALA 53 53 53 ALA ALA A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 THR 56 56 56 THR THR A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 PHE 58 58 58 PHE PHE A . n A 1 59 SER 59 59 59 SER SER A . n A 1 60 ASN 60 60 60 ASN ASN A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 LEU 62 62 62 LEU LEU A . n A 1 63 THR 63 63 63 THR THR A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 TYR 65 65 65 TYR TYR A . n A 1 66 SER 66 66 66 SER SER A . n A 1 67 HIS 67 67 67 HIS HIS A . n A 1 68 ASN 68 68 68 ASN ASN A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 TYR 71 71 71 TYR TYR A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 TRP 74 74 74 TRP TRP A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLU 81 81 81 GLU ALA A . n A 1 82 GLU 82 82 ? ? ? A . n A 1 83 PRO 83 83 ? ? ? A . n A 1 84 GLN 84 84 ? ? ? A . n A 1 85 THR 85 85 85 THR THR A . n A 1 86 THR 86 86 86 THR THR A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 VAL 88 88 88 VAL VAL A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 VAL 91 91 91 VAL VAL A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 LEU 93 93 93 LEU LEU A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 THR 99 99 99 THR THR A . n A 1 100 ILE 100 100 100 ILE ILE A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 LEU 102 102 102 LEU LEU A . n A 1 103 TYR 103 103 103 TYR TYR A . n A 1 104 SER 104 104 104 SER SER A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 SER 106 106 106 SER SER A . n A 1 107 ASP 107 107 107 ASP ASP A . n A 1 108 ILE 108 108 108 ILE ILE A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 MET 110 110 110 MET MET A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 ARG 112 112 112 ARG ARG A . n A 1 113 PRO 113 113 113 PRO PRO A . n A 1 114 GLU 114 114 114 GLU GLU A . n A 1 115 GLN 115 115 115 GLN GLN A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 THR 117 117 117 THR THR A . n A 1 118 THR 118 118 118 THR THR A . n A 1 119 HIS 119 119 119 HIS HIS A . n A 1 120 PRO 120 120 120 PRO PRO A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 LEU 122 122 122 LEU LEU A . n A 1 123 GLN 123 123 123 GLN GLN A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 VAL 125 125 125 VAL VAL A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 ASP 128 128 128 ASP ASP A . n A 1 129 VAL 129 129 129 VAL VAL A . n A 1 130 LEU 130 130 130 LEU LEU A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 PRO 132 132 132 PRO PRO A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 THR 135 135 135 THR THR A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 VAL 138 138 138 VAL VAL A . n A 1 139 VAL 139 139 139 VAL VAL A . n A 1 140 LYS 140 140 140 LYS LYS A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 ARG 142 142 142 ARG ARG A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 LEU 144 144 144 LEU LEU A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 PRO 146 146 146 PRO PRO A . n A 1 147 ARG 147 147 147 ARG ARG A . n A 1 148 PHE 148 148 148 PHE PHE A . n A 1 149 ARG 149 149 149 ARG ARG A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 ARG 151 151 151 ARG ARG A . n A 1 152 GLN 152 152 152 GLN GLN A . n A 1 153 PHE 153 153 153 PHE PHE A . n A 1 154 ALA 154 154 154 ALA ALA A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 GLN 160 160 160 GLN GLN A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 PHE 162 162 162 PHE PHE A . n A 1 163 LEU 163 163 163 LEU LEU A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 GLY 165 165 165 GLY GLY A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 GLY 167 167 167 GLY GLY A . n A 1 168 ASN 168 168 168 ASN ASN A . n A 1 169 TYR 169 169 169 TYR TYR A . n A 1 170 LEU 170 170 170 LEU LEU A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 VAL 172 172 172 VAL VAL A . n A 1 173 GLU 173 173 173 GLU GLU A . n A 1 174 ILE 174 174 174 ILE ILE A . n A 1 175 LEU 175 175 175 LEU LEU A . n A 1 176 TRP 176 176 176 TRP TRP A . n A 1 177 GLN 177 177 177 GLN GLN A . n A 1 178 VAL 178 178 178 VAL VAL A . n A 1 179 GLY 179 179 179 GLY GLY A . n A 1 180 LEU 180 180 180 LEU LEU A . n A 1 181 THR 181 181 181 THR THR A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 ASN 183 183 183 ASN ASN A . n A 1 184 HIS 184 184 184 HIS HIS A . n A 1 185 LYS 185 185 185 LYS ALA A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 LYS 187 187 187 LYS LYS A . n A 1 188 ASP 188 188 188 ASP ASP A . n A 1 189 LEU 189 189 189 LEU LEU A . n A 1 190 ASN 190 190 190 ASN ASN A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 GLN 193 193 193 GLN GLN A . n A 1 194 LEU 194 194 194 LEU LEU A . n A 1 195 ASP 195 195 195 ASP ASP A . n A 1 196 ALA 196 196 196 ALA ALA A . n A 1 197 LEU 197 197 197 LEU LEU A . n A 1 198 ALA 198 198 198 ALA ALA A . n A 1 199 HIS 199 199 199 HIS HIS A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 LEU 201 201 201 LEU LEU A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 GLU 203 203 203 GLU GLU A . n A 1 204 ILE 204 204 204 ILE ILE A . n A 1 205 PRO 205 205 205 PRO PRO A . n A 1 206 ARG 206 206 206 ARG ARG A . n A 1 207 PHE 207 207 207 PHE ALA A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 TYR 209 209 209 TYR ALA A . n A 1 210 ALA 210 210 210 ALA ALA A . n A 1 211 THR 211 211 211 THR THR A . n A 1 212 ARG 212 212 212 ARG ARG A . n A 1 213 GLY 213 213 213 GLY GLY A . n A 1 214 GLN 214 214 ? ? ? A . n A 1 215 VAL 215 215 ? ? ? A . n A 1 216 ASP 216 216 ? ? ? A . n A 1 217 GLU 217 217 217 GLU GLU A . n A 1 218 ASN 218 218 218 ASN ASN A . n A 1 219 LYS 219 219 219 LYS ALA A . n A 1 220 HIS 220 220 220 HIS HIS A . n A 1 221 HIS 221 221 221 HIS HIS A . n A 1 222 GLY 222 222 222 GLY GLY A . n A 1 223 ALA 223 223 223 ALA ALA A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 PHE 225 225 225 PHE PHE A . n A 1 226 ARG 226 226 226 ARG ARG A . n A 1 227 PHE 227 227 227 PHE PHE A . n A 1 228 LYS 228 228 228 LYS LYS A . n A 1 229 VAL 229 229 229 VAL VAL A . n A 1 230 PHE 230 230 230 PHE PHE A . n A 1 231 HIS 231 231 231 HIS HIS A . n A 1 232 ARG 232 232 232 ARG ARG A . n A 1 233 ASP 233 233 233 ASP ASP A . n A 1 234 GLY 234 234 234 GLY GLY A . n A 1 235 GLU 235 235 235 GLU GLU A . n A 1 236 PRO 236 236 236 PRO PRO A . n A 1 237 CYS 237 237 237 CYS CYS A . n A 1 238 GLU 238 238 238 GLU GLU A . n A 1 239 ARG 239 239 239 ARG ARG A . n A 1 240 CYS 240 240 240 CYS CYS A . n A 1 241 GLY 241 241 241 GLY GLY A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 ILE 243 243 243 ILE ILE A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 GLU 245 245 245 GLU GLU A . n A 1 246 LYS 246 246 246 LYS ALA A . n A 1 247 THR 247 247 247 THR THR A . n A 1 248 THR 248 248 ? ? ? A . n A 1 249 LEU 249 249 ? ? ? A . n A 1 250 SER 250 250 ? ? ? A . n A 1 251 SER 251 251 ? ? ? A . n A 1 252 ARG 252 252 ? ? ? A . n A 1 253 PRO 253 253 253 PRO PRO A . n A 1 254 PHE 254 254 254 PHE PHE A . n A 1 255 TYR 255 255 255 TYR TYR A . n A 1 256 TRP 256 256 256 TRP TRP A . n A 1 257 CYS 257 257 257 CYS CYS A . n A 1 258 PRO 258 258 258 PRO PRO A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 CYS 260 260 260 CYS CYS A . n A 1 261 GLN 261 261 261 GLN GLN A . n A 1 262 HIS 262 262 262 HIS HIS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN 1 301 301 ZN ZN2 A . C 3 MG 1 302 302 MG MG2 A . D 3 MG 1 303 303 MG MG2 A . E 4 GOL 1 351 351 GOL GOL A . F 4 GOL 1 352 352 GOL GOL A . G 4 GOL 1 353 353 GOL GOL A . H 5 HOH 1 401 401 HOH WAT A . H 5 HOH 2 402 402 HOH WAT A . H 5 HOH 3 403 403 HOH WAT A . H 5 HOH 4 404 404 HOH WAT A . H 5 HOH 5 405 405 HOH WAT A . H 5 HOH 6 406 406 HOH WAT A . H 5 HOH 7 407 407 HOH WAT A . H 5 HOH 8 408 408 HOH WAT A . H 5 HOH 9 409 409 HOH WAT A . H 5 HOH 10 410 410 HOH WAT A . H 5 HOH 11 411 411 HOH WAT A . H 5 HOH 12 412 412 HOH WAT A . H 5 HOH 13 413 413 HOH WAT A . H 5 HOH 14 414 414 HOH WAT A . H 5 HOH 15 415 415 HOH WAT A . H 5 HOH 16 416 416 HOH WAT A . H 5 HOH 17 417 417 HOH WAT A . H 5 HOH 18 418 418 HOH WAT A . H 5 HOH 19 419 419 HOH WAT A . H 5 HOH 20 420 420 HOH WAT A . H 5 HOH 21 421 421 HOH WAT A . H 5 HOH 22 422 422 HOH WAT A . H 5 HOH 23 423 423 HOH WAT A . H 5 HOH 24 424 424 HOH WAT A . H 5 HOH 25 425 425 HOH WAT A . H 5 HOH 26 426 426 HOH WAT A . H 5 HOH 27 427 427 HOH WAT A . H 5 HOH 28 428 428 HOH WAT A . H 5 HOH 29 429 429 HOH WAT A . H 5 HOH 30 430 430 HOH WAT A . H 5 HOH 31 431 431 HOH WAT A . H 5 HOH 32 432 432 HOH WAT A . H 5 HOH 33 433 433 HOH WAT A . H 5 HOH 34 435 435 HOH WAT A . H 5 HOH 35 436 436 HOH WAT A . H 5 HOH 36 437 437 HOH WAT A . H 5 HOH 37 438 438 HOH WAT A . H 5 HOH 38 439 439 HOH WAT A . H 5 HOH 39 440 440 HOH WAT A . H 5 HOH 40 441 441 HOH WAT A . H 5 HOH 41 442 442 HOH WAT A . H 5 HOH 42 443 443 HOH WAT A . H 5 HOH 43 444 444 HOH WAT A . H 5 HOH 44 445 445 HOH WAT A . H 5 HOH 45 446 446 HOH WAT A . H 5 HOH 46 448 448 HOH WAT A . H 5 HOH 47 449 449 HOH WAT A . H 5 HOH 48 451 451 HOH WAT A . H 5 HOH 49 452 452 HOH WAT A . H 5 HOH 50 453 453 HOH WAT A . H 5 HOH 51 454 454 HOH WAT A . H 5 HOH 52 455 455 HOH WAT A . H 5 HOH 53 456 456 HOH WAT A . H 5 HOH 54 457 457 HOH WAT A . H 5 HOH 55 458 458 HOH WAT A . H 5 HOH 56 459 459 HOH WAT A . H 5 HOH 57 460 460 HOH WAT A . H 5 HOH 58 461 461 HOH WAT A . H 5 HOH 59 462 462 HOH WAT A . H 5 HOH 60 464 464 HOH WAT A . H 5 HOH 61 465 465 HOH WAT A . H 5 HOH 62 466 466 HOH WAT A . H 5 HOH 63 467 467 HOH WAT A . H 5 HOH 64 469 469 HOH WAT A . H 5 HOH 65 470 470 HOH WAT A . H 5 HOH 66 471 471 HOH WAT A . H 5 HOH 67 472 472 HOH WAT A . H 5 HOH 68 473 473 HOH WAT A . H 5 HOH 69 474 474 HOH WAT A . H 5 HOH 70 475 475 HOH WAT A . H 5 HOH 71 476 476 HOH WAT A . H 5 HOH 72 477 477 HOH WAT A . H 5 HOH 73 478 478 HOH WAT A . H 5 HOH 74 479 479 HOH WAT A . H 5 HOH 75 480 480 HOH WAT A . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 software_defined_assembly PISA,PQS tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H 2 1,2,3,4 A,B,C,D,E,F,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 2 'ABSA (A^2)' 12430 ? 2 MORE -96 ? 2 'SSA (A^2)' 42990 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -x,-y,z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x,y,-z -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_555 x,-y,-z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 NE2 ? A HIS 184 ? A HIS 184 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O ? A HIS 262 ? A HIS 262 ? 1_555 100.1 ? 2 NE2 ? A HIS 184 ? A HIS 184 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 OXT ? A HIS 262 ? A HIS 262 ? 1_555 85.0 ? 3 O ? A HIS 262 ? A HIS 262 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 OXT ? A HIS 262 ? A HIS 262 ? 1_555 45.3 ? 4 NE2 ? A HIS 184 ? A HIS 184 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 NE2 ? A HIS 262 ? A HIS 262 ? 3_555 111.1 ? 5 O ? A HIS 262 ? A HIS 262 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 NE2 ? A HIS 262 ? A HIS 262 ? 3_555 98.6 ? 6 OXT ? A HIS 262 ? A HIS 262 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 NE2 ? A HIS 262 ? A HIS 262 ? 3_555 64.7 ? 7 NE2 ? A HIS 184 ? A HIS 184 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O ? H HOH . ? A HOH 479 ? 1_555 108.2 ? 8 O ? A HIS 262 ? A HIS 262 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O ? H HOH . ? A HOH 479 ? 1_555 123.9 ? 9 OXT ? A HIS 262 ? A HIS 262 ? 1_555 MG ? C MG . ? A MG 302 ? 1_555 O ? H HOH . ? A HOH 479 ? 1_555 165.5 ? 10 NE2 ? A HIS 262 ? A HIS 262 ? 3_555 MG ? C MG . ? A MG 302 ? 1_555 O ? H HOH . ? A HOH 479 ? 1_555 114.0 ? 11 OD1 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 OD2 ? A ASP 195 ? A ASP 195 ? 2_555 50.0 ? 12 OD1 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 NE2 ? A HIS 199 ? A HIS 199 ? 2_555 107.1 ? 13 OD2 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 NE2 ? A HIS 199 ? A HIS 199 ? 2_555 85.3 ? 14 OD1 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 NE2 ? A HIS 220 ? A HIS 220 ? 1_555 130.4 ? 15 OD2 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 NE2 ? A HIS 220 ? A HIS 220 ? 1_555 99.8 ? 16 NE2 ? A HIS 199 ? A HIS 199 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 NE2 ? A HIS 220 ? A HIS 220 ? 1_555 108.1 ? 17 OD1 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 O ? H HOH . ? A HOH 452 ? 1_555 102.4 ? 18 OD2 ? A ASP 195 ? A ASP 195 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 O ? H HOH . ? A HOH 452 ? 1_555 152.4 ? 19 NE2 ? A HIS 199 ? A HIS 199 ? 2_555 MG ? D MG . ? A MG 303 ? 1_555 O ? H HOH . ? A HOH 452 ? 1_555 106.3 ? 20 NE2 ? A HIS 220 ? A HIS 220 ? 1_555 MG ? D MG . ? A MG 303 ? 1_555 O ? H HOH . ? A HOH 452 ? 1_555 100.1 ? 21 SG ? A CYS 237 ? A CYS 237 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 240 ? A CYS 240 ? 1_555 107.8 ? 22 SG ? A CYS 237 ? A CYS 237 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 257 ? A CYS 257 ? 1_555 113.5 ? 23 SG ? A CYS 240 ? A CYS 240 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 257 ? A CYS 257 ? 1_555 92.7 ? 24 SG ? A CYS 237 ? A CYS 237 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 260 ? A CYS 260 ? 1_555 109.6 ? 25 SG ? A CYS 240 ? A CYS 240 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 260 ? A CYS 260 ? 1_555 117.0 ? 26 SG ? A CYS 257 ? A CYS 257 ? 1_555 ZN ? B ZN . ? A ZN 301 ? 1_555 SG ? A CYS 260 ? A CYS 260 ? 1_555 115.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-08-03 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_conn_angle 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond 8 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 30 4 'Structure model' '_struct_conn.ptnr1_symmetry' 31 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 37 4 'Structure model' '_struct_conn.ptnr2_symmetry' 38 4 'Structure model' '_struct_ref_seq_dif.details' 39 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # _pdbx_database_remark.id 999 _pdbx_database_remark.text ;SEQUENCE SEQUENCING AND CRYSTALLOGRAPHY CONFIRM THE SEQUENCE AS THR A 34 AND ARG A 112. ; # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 479 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 479 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_555 _pdbx_validate_symm_contact.dist 1.67 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 6 ? ? 67.34 -50.63 2 1 GLN A 69 ? ? 55.76 -117.68 3 1 THR A 86 ? ? 54.56 -26.40 4 1 SER A 104 ? ? 66.88 -42.71 5 1 PRO A 146 ? B -55.18 -8.33 6 1 ARG A 149 ? ? -46.67 -12.13 7 1 PHE A 162 ? ? -91.99 -61.29 8 1 ALA A 210 ? ? -68.65 55.15 9 1 THR A 211 ? ? 178.34 -177.44 10 1 ARG A 212 ? ? 79.46 120.81 11 1 VAL A 229 ? ? -142.43 -10.12 12 1 HIS A 231 ? ? 67.24 -128.54 13 1 ARG A 232 ? ? 45.58 1.32 14 1 ARG A 239 ? ? -83.17 -70.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ILE 6 ? CG1 ? A ILE 6 CG1 2 1 Y 1 A ILE 6 ? CG2 ? A ILE 6 CG2 3 1 Y 1 A ILE 6 ? CD1 ? A ILE 6 CD1 4 1 Y 1 A ASP 11 ? CG ? A ASP 11 CG 5 1 Y 1 A ASP 11 ? OD1 ? A ASP 11 OD1 6 1 Y 1 A ASP 11 ? OD2 ? A ASP 11 OD2 7 1 Y 1 A GLU 81 ? CG ? A GLU 81 CG 8 1 Y 1 A GLU 81 ? CD ? A GLU 81 CD 9 1 Y 1 A GLU 81 ? OE1 ? A GLU 81 OE1 10 1 Y 1 A GLU 81 ? OE2 ? A GLU 81 OE2 11 1 Y 1 A LYS 185 ? CG ? A LYS 185 CG 12 1 Y 1 A LYS 185 ? CD ? A LYS 185 CD 13 1 Y 1 A LYS 185 ? CE ? A LYS 185 CE 14 1 Y 1 A LYS 185 ? NZ ? A LYS 185 NZ 15 1 Y 1 A PHE 207 ? CG ? A PHE 207 CG 16 1 Y 1 A PHE 207 ? CD1 ? A PHE 207 CD1 17 1 Y 1 A PHE 207 ? CD2 ? A PHE 207 CD2 18 1 Y 1 A PHE 207 ? CE1 ? A PHE 207 CE1 19 1 Y 1 A PHE 207 ? CE2 ? A PHE 207 CE2 20 1 Y 1 A PHE 207 ? CZ ? A PHE 207 CZ 21 1 Y 1 A TYR 209 ? CG ? A TYR 209 CG 22 1 Y 1 A TYR 209 ? CD1 ? A TYR 209 CD1 23 1 Y 1 A TYR 209 ? CD2 ? A TYR 209 CD2 24 1 Y 1 A TYR 209 ? CE1 ? A TYR 209 CE1 25 1 Y 1 A TYR 209 ? CE2 ? A TYR 209 CE2 26 1 Y 1 A TYR 209 ? CZ ? A TYR 209 CZ 27 1 Y 1 A TYR 209 ? OH ? A TYR 209 OH 28 1 Y 1 A LYS 219 ? CG ? A LYS 219 CG 29 1 Y 1 A LYS 219 ? CD ? A LYS 219 CD 30 1 Y 1 A LYS 219 ? CE ? A LYS 219 CE 31 1 Y 1 A LYS 219 ? NZ ? A LYS 219 NZ 32 1 Y 1 A LYS 246 ? CG ? A LYS 246 CG 33 1 Y 1 A LYS 246 ? CD ? A LYS 246 CD 34 1 Y 1 A LYS 246 ? CE ? A LYS 246 CE 35 1 Y 1 A LYS 246 ? NZ ? A LYS 246 NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A PRO 1 ? A PRO 1 2 1 Y 1 A GLU 82 ? A GLU 82 3 1 Y 1 A PRO 83 ? A PRO 83 4 1 Y 1 A GLN 84 ? A GLN 84 5 1 Y 1 A GLN 214 ? A GLN 214 6 1 Y 1 A VAL 215 ? A VAL 215 7 1 Y 1 A ASP 216 ? A ASP 216 8 1 Y 1 A THR 248 ? A THR 248 9 1 Y 1 A LEU 249 ? A LEU 249 10 1 Y 1 A SER 250 ? A SER 250 11 1 Y 1 A SER 251 ? A SER 251 12 1 Y 1 A ARG 252 ? A ARG 252 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 GLN N N N N 88 GLN CA C N S 89 GLN C C N N 90 GLN O O N N 91 GLN CB C N N 92 GLN CG C N N 93 GLN CD C N N 94 GLN OE1 O N N 95 GLN NE2 N N N 96 GLN OXT O N N 97 GLN H H N N 98 GLN H2 H N N 99 GLN HA H N N 100 GLN HB2 H N N 101 GLN HB3 H N N 102 GLN HG2 H N N 103 GLN HG3 H N N 104 GLN HE21 H N N 105 GLN HE22 H N N 106 GLN HXT H N N 107 GLU N N N N 108 GLU CA C N S 109 GLU C C N N 110 GLU O O N N 111 GLU CB C N N 112 GLU CG C N N 113 GLU CD C N N 114 GLU OE1 O N N 115 GLU OE2 O N N 116 GLU OXT O N N 117 GLU H H N N 118 GLU H2 H N N 119 GLU HA H N N 120 GLU HB2 H N N 121 GLU HB3 H N N 122 GLU HG2 H N N 123 GLU HG3 H N N 124 GLU HE2 H N N 125 GLU HXT H N N 126 GLY N N N N 127 GLY CA C N N 128 GLY C C N N 129 GLY O O N N 130 GLY OXT O N N 131 GLY H H N N 132 GLY H2 H N N 133 GLY HA2 H N N 134 GLY HA3 H N N 135 GLY HXT H N N 136 GOL C1 C N N 137 GOL O1 O N N 138 GOL C2 C N N 139 GOL O2 O N N 140 GOL C3 C N N 141 GOL O3 O N N 142 GOL H11 H N N 143 GOL H12 H N N 144 GOL HO1 H N N 145 GOL H2 H N N 146 GOL HO2 H N N 147 GOL H31 H N N 148 GOL H32 H N N 149 GOL HO3 H N N 150 HIS N N N N 151 HIS CA C N S 152 HIS C C N N 153 HIS O O N N 154 HIS CB C N N 155 HIS CG C Y N 156 HIS ND1 N Y N 157 HIS CD2 C Y N 158 HIS CE1 C Y N 159 HIS NE2 N Y N 160 HIS OXT O N N 161 HIS H H N N 162 HIS H2 H N N 163 HIS HA H N N 164 HIS HB2 H N N 165 HIS HB3 H N N 166 HIS HD1 H N N 167 HIS HD2 H N N 168 HIS HE1 H N N 169 HIS HE2 H N N 170 HIS HXT H N N 171 HOH O O N N 172 HOH H1 H N N 173 HOH H2 H N N 174 ILE N N N N 175 ILE CA C N S 176 ILE C C N N 177 ILE O O N N 178 ILE CB C N S 179 ILE CG1 C N N 180 ILE CG2 C N N 181 ILE CD1 C N N 182 ILE OXT O N N 183 ILE H H N N 184 ILE H2 H N N 185 ILE HA H N N 186 ILE HB H N N 187 ILE HG12 H N N 188 ILE HG13 H N N 189 ILE HG21 H N N 190 ILE HG22 H N N 191 ILE HG23 H N N 192 ILE HD11 H N N 193 ILE HD12 H N N 194 ILE HD13 H N N 195 ILE HXT H N N 196 LEU N N N N 197 LEU CA C N S 198 LEU C C N N 199 LEU O O N N 200 LEU CB C N N 201 LEU CG C N N 202 LEU CD1 C N N 203 LEU CD2 C N N 204 LEU OXT O N N 205 LEU H H N N 206 LEU H2 H N N 207 LEU HA H N N 208 LEU HB2 H N N 209 LEU HB3 H N N 210 LEU HG H N N 211 LEU HD11 H N N 212 LEU HD12 H N N 213 LEU HD13 H N N 214 LEU HD21 H N N 215 LEU HD22 H N N 216 LEU HD23 H N N 217 LEU HXT H N N 218 LYS N N N N 219 LYS CA C N S 220 LYS C C N N 221 LYS O O N N 222 LYS CB C N N 223 LYS CG C N N 224 LYS CD C N N 225 LYS CE C N N 226 LYS NZ N N N 227 LYS OXT O N N 228 LYS H H N N 229 LYS H2 H N N 230 LYS HA H N N 231 LYS HB2 H N N 232 LYS HB3 H N N 233 LYS HG2 H N N 234 LYS HG3 H N N 235 LYS HD2 H N N 236 LYS HD3 H N N 237 LYS HE2 H N N 238 LYS HE3 H N N 239 LYS HZ1 H N N 240 LYS HZ2 H N N 241 LYS HZ3 H N N 242 LYS HXT H N N 243 MET N N N N 244 MET CA C N S 245 MET C C N N 246 MET O O N N 247 MET CB C N N 248 MET CG C N N 249 MET SD S N N 250 MET CE C N N 251 MET OXT O N N 252 MET H H N N 253 MET H2 H N N 254 MET HA H N N 255 MET HB2 H N N 256 MET HB3 H N N 257 MET HG2 H N N 258 MET HG3 H N N 259 MET HE1 H N N 260 MET HE2 H N N 261 MET HE3 H N N 262 MET HXT H N N 263 MG MG MG N N 264 PHE N N N N 265 PHE CA C N S 266 PHE C C N N 267 PHE O O N N 268 PHE CB C N N 269 PHE CG C Y N 270 PHE CD1 C Y N 271 PHE CD2 C Y N 272 PHE CE1 C Y N 273 PHE CE2 C Y N 274 PHE CZ C Y N 275 PHE OXT O N N 276 PHE H H N N 277 PHE H2 H N N 278 PHE HA H N N 279 PHE HB2 H N N 280 PHE HB3 H N N 281 PHE HD1 H N N 282 PHE HD2 H N N 283 PHE HE1 H N N 284 PHE HE2 H N N 285 PHE HZ H N N 286 PHE HXT H N N 287 PRO N N N N 288 PRO CA C N S 289 PRO C C N N 290 PRO O O N N 291 PRO CB C N N 292 PRO CG C N N 293 PRO CD C N N 294 PRO OXT O N N 295 PRO H H N N 296 PRO HA H N N 297 PRO HB2 H N N 298 PRO HB3 H N N 299 PRO HG2 H N N 300 PRO HG3 H N N 301 PRO HD2 H N N 302 PRO HD3 H N N 303 PRO HXT H N N 304 SER N N N N 305 SER CA C N S 306 SER C C N N 307 SER O O N N 308 SER CB C N N 309 SER OG O N N 310 SER OXT O N N 311 SER H H N N 312 SER H2 H N N 313 SER HA H N N 314 SER HB2 H N N 315 SER HB3 H N N 316 SER HG H N N 317 SER HXT H N N 318 THR N N N N 319 THR CA C N S 320 THR C C N N 321 THR O O N N 322 THR CB C N R 323 THR OG1 O N N 324 THR CG2 C N N 325 THR OXT O N N 326 THR H H N N 327 THR H2 H N N 328 THR HA H N N 329 THR HB H N N 330 THR HG1 H N N 331 THR HG21 H N N 332 THR HG22 H N N 333 THR HG23 H N N 334 THR HXT H N N 335 TRP N N N N 336 TRP CA C N S 337 TRP C C N N 338 TRP O O N N 339 TRP CB C N N 340 TRP CG C Y N 341 TRP CD1 C Y N 342 TRP CD2 C Y N 343 TRP NE1 N Y N 344 TRP CE2 C Y N 345 TRP CE3 C Y N 346 TRP CZ2 C Y N 347 TRP CZ3 C Y N 348 TRP CH2 C Y N 349 TRP OXT O N N 350 TRP H H N N 351 TRP H2 H N N 352 TRP HA H N N 353 TRP HB2 H N N 354 TRP HB3 H N N 355 TRP HD1 H N N 356 TRP HE1 H N N 357 TRP HE3 H N N 358 TRP HZ2 H N N 359 TRP HZ3 H N N 360 TRP HH2 H N N 361 TRP HXT H N N 362 TYR N N N N 363 TYR CA C N S 364 TYR C C N N 365 TYR O O N N 366 TYR CB C N N 367 TYR CG C Y N 368 TYR CD1 C Y N 369 TYR CD2 C Y N 370 TYR CE1 C Y N 371 TYR CE2 C Y N 372 TYR CZ C Y N 373 TYR OH O N N 374 TYR OXT O N N 375 TYR H H N N 376 TYR H2 H N N 377 TYR HA H N N 378 TYR HB2 H N N 379 TYR HB3 H N N 380 TYR HD1 H N N 381 TYR HD2 H N N 382 TYR HE1 H N N 383 TYR HE2 H N N 384 TYR HH H N N 385 TYR HXT H N N 386 VAL N N N N 387 VAL CA C N S 388 VAL C C N N 389 VAL O O N N 390 VAL CB C N N 391 VAL CG1 C N N 392 VAL CG2 C N N 393 VAL OXT O N N 394 VAL H H N N 395 VAL H2 H N N 396 VAL HA H N N 397 VAL HB H N N 398 VAL HG11 H N N 399 VAL HG12 H N N 400 VAL HG13 H N N 401 VAL HG21 H N N 402 VAL HG22 H N N 403 VAL HG23 H N N 404 VAL HXT H N N 405 ZN ZN ZN N N 406 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 GLN N CA sing N N 83 GLN N H sing N N 84 GLN N H2 sing N N 85 GLN CA C sing N N 86 GLN CA CB sing N N 87 GLN CA HA sing N N 88 GLN C O doub N N 89 GLN C OXT sing N N 90 GLN CB CG sing N N 91 GLN CB HB2 sing N N 92 GLN CB HB3 sing N N 93 GLN CG CD sing N N 94 GLN CG HG2 sing N N 95 GLN CG HG3 sing N N 96 GLN CD OE1 doub N N 97 GLN CD NE2 sing N N 98 GLN NE2 HE21 sing N N 99 GLN NE2 HE22 sing N N 100 GLN OXT HXT sing N N 101 GLU N CA sing N N 102 GLU N H sing N N 103 GLU N H2 sing N N 104 GLU CA C sing N N 105 GLU CA CB sing N N 106 GLU CA HA sing N N 107 GLU C O doub N N 108 GLU C OXT sing N N 109 GLU CB CG sing N N 110 GLU CB HB2 sing N N 111 GLU CB HB3 sing N N 112 GLU CG CD sing N N 113 GLU CG HG2 sing N N 114 GLU CG HG3 sing N N 115 GLU CD OE1 doub N N 116 GLU CD OE2 sing N N 117 GLU OE2 HE2 sing N N 118 GLU OXT HXT sing N N 119 GLY N CA sing N N 120 GLY N H sing N N 121 GLY N H2 sing N N 122 GLY CA C sing N N 123 GLY CA HA2 sing N N 124 GLY CA HA3 sing N N 125 GLY C O doub N N 126 GLY C OXT sing N N 127 GLY OXT HXT sing N N 128 GOL C1 O1 sing N N 129 GOL C1 C2 sing N N 130 GOL C1 H11 sing N N 131 GOL C1 H12 sing N N 132 GOL O1 HO1 sing N N 133 GOL C2 O2 sing N N 134 GOL C2 C3 sing N N 135 GOL C2 H2 sing N N 136 GOL O2 HO2 sing N N 137 GOL C3 O3 sing N N 138 GOL C3 H31 sing N N 139 GOL C3 H32 sing N N 140 GOL O3 HO3 sing N N 141 HIS N CA sing N N 142 HIS N H sing N N 143 HIS N H2 sing N N 144 HIS CA C sing N N 145 HIS CA CB sing N N 146 HIS CA HA sing N N 147 HIS C O doub N N 148 HIS C OXT sing N N 149 HIS CB CG sing N N 150 HIS CB HB2 sing N N 151 HIS CB HB3 sing N N 152 HIS CG ND1 sing Y N 153 HIS CG CD2 doub Y N 154 HIS ND1 CE1 doub Y N 155 HIS ND1 HD1 sing N N 156 HIS CD2 NE2 sing Y N 157 HIS CD2 HD2 sing N N 158 HIS CE1 NE2 sing Y N 159 HIS CE1 HE1 sing N N 160 HIS NE2 HE2 sing N N 161 HIS OXT HXT sing N N 162 HOH O H1 sing N N 163 HOH O H2 sing N N 164 ILE N CA sing N N 165 ILE N H sing N N 166 ILE N H2 sing N N 167 ILE CA C sing N N 168 ILE CA CB sing N N 169 ILE CA HA sing N N 170 ILE C O doub N N 171 ILE C OXT sing N N 172 ILE CB CG1 sing N N 173 ILE CB CG2 sing N N 174 ILE CB HB sing N N 175 ILE CG1 CD1 sing N N 176 ILE CG1 HG12 sing N N 177 ILE CG1 HG13 sing N N 178 ILE CG2 HG21 sing N N 179 ILE CG2 HG22 sing N N 180 ILE CG2 HG23 sing N N 181 ILE CD1 HD11 sing N N 182 ILE CD1 HD12 sing N N 183 ILE CD1 HD13 sing N N 184 ILE OXT HXT sing N N 185 LEU N CA sing N N 186 LEU N H sing N N 187 LEU N H2 sing N N 188 LEU CA C sing N N 189 LEU CA CB sing N N 190 LEU CA HA sing N N 191 LEU C O doub N N 192 LEU C OXT sing N N 193 LEU CB CG sing N N 194 LEU CB HB2 sing N N 195 LEU CB HB3 sing N N 196 LEU CG CD1 sing N N 197 LEU CG CD2 sing N N 198 LEU CG HG sing N N 199 LEU CD1 HD11 sing N N 200 LEU CD1 HD12 sing N N 201 LEU CD1 HD13 sing N N 202 LEU CD2 HD21 sing N N 203 LEU CD2 HD22 sing N N 204 LEU CD2 HD23 sing N N 205 LEU OXT HXT sing N N 206 LYS N CA sing N N 207 LYS N H sing N N 208 LYS N H2 sing N N 209 LYS CA C sing N N 210 LYS CA CB sing N N 211 LYS CA HA sing N N 212 LYS C O doub N N 213 LYS C OXT sing N N 214 LYS CB CG sing N N 215 LYS CB HB2 sing N N 216 LYS CB HB3 sing N N 217 LYS CG CD sing N N 218 LYS CG HG2 sing N N 219 LYS CG HG3 sing N N 220 LYS CD CE sing N N 221 LYS CD HD2 sing N N 222 LYS CD HD3 sing N N 223 LYS CE NZ sing N N 224 LYS CE HE2 sing N N 225 LYS CE HE3 sing N N 226 LYS NZ HZ1 sing N N 227 LYS NZ HZ2 sing N N 228 LYS NZ HZ3 sing N N 229 LYS OXT HXT sing N N 230 MET N CA sing N N 231 MET N H sing N N 232 MET N H2 sing N N 233 MET CA C sing N N 234 MET CA CB sing N N 235 MET CA HA sing N N 236 MET C O doub N N 237 MET C OXT sing N N 238 MET CB CG sing N N 239 MET CB HB2 sing N N 240 MET CB HB3 sing N N 241 MET CG SD sing N N 242 MET CG HG2 sing N N 243 MET CG HG3 sing N N 244 MET SD CE sing N N 245 MET CE HE1 sing N N 246 MET CE HE2 sing N N 247 MET CE HE3 sing N N 248 MET OXT HXT sing N N 249 PHE N CA sing N N 250 PHE N H sing N N 251 PHE N H2 sing N N 252 PHE CA C sing N N 253 PHE CA CB sing N N 254 PHE CA HA sing N N 255 PHE C O doub N N 256 PHE C OXT sing N N 257 PHE CB CG sing N N 258 PHE CB HB2 sing N N 259 PHE CB HB3 sing N N 260 PHE CG CD1 doub Y N 261 PHE CG CD2 sing Y N 262 PHE CD1 CE1 sing Y N 263 PHE CD1 HD1 sing N N 264 PHE CD2 CE2 doub Y N 265 PHE CD2 HD2 sing N N 266 PHE CE1 CZ doub Y N 267 PHE CE1 HE1 sing N N 268 PHE CE2 CZ sing Y N 269 PHE CE2 HE2 sing N N 270 PHE CZ HZ sing N N 271 PHE OXT HXT sing N N 272 PRO N CA sing N N 273 PRO N CD sing N N 274 PRO N H sing N N 275 PRO CA C sing N N 276 PRO CA CB sing N N 277 PRO CA HA sing N N 278 PRO C O doub N N 279 PRO C OXT sing N N 280 PRO CB CG sing N N 281 PRO CB HB2 sing N N 282 PRO CB HB3 sing N N 283 PRO CG CD sing N N 284 PRO CG HG2 sing N N 285 PRO CG HG3 sing N N 286 PRO CD HD2 sing N N 287 PRO CD HD3 sing N N 288 PRO OXT HXT sing N N 289 SER N CA sing N N 290 SER N H sing N N 291 SER N H2 sing N N 292 SER CA C sing N N 293 SER CA CB sing N N 294 SER CA HA sing N N 295 SER C O doub N N 296 SER C OXT sing N N 297 SER CB OG sing N N 298 SER CB HB2 sing N N 299 SER CB HB3 sing N N 300 SER OG HG sing N N 301 SER OXT HXT sing N N 302 THR N CA sing N N 303 THR N H sing N N 304 THR N H2 sing N N 305 THR CA C sing N N 306 THR CA CB sing N N 307 THR CA HA sing N N 308 THR C O doub N N 309 THR C OXT sing N N 310 THR CB OG1 sing N N 311 THR CB CG2 sing N N 312 THR CB HB sing N N 313 THR OG1 HG1 sing N N 314 THR CG2 HG21 sing N N 315 THR CG2 HG22 sing N N 316 THR CG2 HG23 sing N N 317 THR OXT HXT sing N N 318 TRP N CA sing N N 319 TRP N H sing N N 320 TRP N H2 sing N N 321 TRP CA C sing N N 322 TRP CA CB sing N N 323 TRP CA HA sing N N 324 TRP C O doub N N 325 TRP C OXT sing N N 326 TRP CB CG sing N N 327 TRP CB HB2 sing N N 328 TRP CB HB3 sing N N 329 TRP CG CD1 doub Y N 330 TRP CG CD2 sing Y N 331 TRP CD1 NE1 sing Y N 332 TRP CD1 HD1 sing N N 333 TRP CD2 CE2 doub Y N 334 TRP CD2 CE3 sing Y N 335 TRP NE1 CE2 sing Y N 336 TRP NE1 HE1 sing N N 337 TRP CE2 CZ2 sing Y N 338 TRP CE3 CZ3 doub Y N 339 TRP CE3 HE3 sing N N 340 TRP CZ2 CH2 doub Y N 341 TRP CZ2 HZ2 sing N N 342 TRP CZ3 CH2 sing Y N 343 TRP CZ3 HZ3 sing N N 344 TRP CH2 HH2 sing N N 345 TRP OXT HXT sing N N 346 TYR N CA sing N N 347 TYR N H sing N N 348 TYR N H2 sing N N 349 TYR CA C sing N N 350 TYR CA CB sing N N 351 TYR CA HA sing N N 352 TYR C O doub N N 353 TYR C OXT sing N N 354 TYR CB CG sing N N 355 TYR CB HB2 sing N N 356 TYR CB HB3 sing N N 357 TYR CG CD1 doub Y N 358 TYR CG CD2 sing Y N 359 TYR CD1 CE1 sing Y N 360 TYR CD1 HD1 sing N N 361 TYR CD2 CE2 doub Y N 362 TYR CD2 HD2 sing N N 363 TYR CE1 CZ doub Y N 364 TYR CE1 HE1 sing N N 365 TYR CE2 CZ sing Y N 366 TYR CE2 HE2 sing N N 367 TYR CZ OH sing N N 368 TYR OH HH sing N N 369 TYR OXT HXT sing N N 370 VAL N CA sing N N 371 VAL N H sing N N 372 VAL N H2 sing N N 373 VAL CA C sing N N 374 VAL CA CB sing N N 375 VAL CA HA sing N N 376 VAL C O doub N N 377 VAL C OXT sing N N 378 VAL CB CG1 sing N N 379 VAL CB CG2 sing N N 380 VAL CB HB sing N N 381 VAL CG1 HG11 sing N N 382 VAL CG1 HG12 sing N N 383 VAL CG1 HG13 sing N N 384 VAL CG2 HG21 sing N N 385 VAL CG2 HG22 sing N N 386 VAL CG2 HG23 sing N N 387 VAL OXT HXT sing N N 388 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 'MAGNESIUM ION' MG 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Q3B _pdbx_initial_refinement_model.details ;PDB code 1Q3B Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The R252A mutant at 2.05 resolution. ; #