data_1Q3F # _entry.id 1Q3F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.376 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q3F pdb_00001q3f 10.2210/pdb1q3f/pdb NDB PD0461 ? ? RCSB RCSB019866 ? ? WWPDB D_1000019866 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EMH 'Crystal Structure Of Human Uracil-DNA Glycosylase Bound To Uncleaved Substrate-Containing DNA' unspecified PDB 1SSP 'Wild-Type Uracil-DNA Glycosylase Bound To Uracil-Containing DNA' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q3F _pdbx_database_status.recvd_initial_deposition_date 2003-07-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bianchet, M.A.' 1 'Seiple, L.A.' 2 'Jiang, Y.L.' 3 'Ichikawa, Y.' 4 'Amzel, L.M.' 5 'Stivers, J.T.' 6 # _citation.id primary _citation.title 'Electrostatic guidance of glycosyl cation migration along the reaction coordinate of uracil DNA glycosylase.' _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 12455 _citation.page_last 12460 _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14580190 _citation.pdbx_database_id_DOI 10.1021/bi035372+ # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bianchet, M.A.' 1 ? primary 'Seiple, L.A.' 2 ? primary 'Jiang, Y.L.' 3 ? primary 'Ichikawa, Y.' 4 ? primary 'Amzel, L.M.' 5 ? primary 'Stivers, J.T.' 6 ? # _cell.entry_id 1Q3F _cell.length_a 48.640 _cell.length_b 65.890 _cell.length_c 99.410 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1Q3F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*(NRI)P*AP*TP*CP*TP*T)-3'" 2586.712 1 ? ? ? ;1-aza-2'-deoxyribose-containing DNA ; 2 polymer syn "5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'" 3070.071 1 ? ? ? ? 3 polymer man 'Uracil-DNA glycosylase' 25544.137 1 3.2.2.- ? ? ? 4 non-polymer syn URACIL 112.087 1 ? ? ? ? 5 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 6 water nat water 18.015 275 ? ? ? ? # _entity_name_com.entity_id 3 _entity_name_com.name UDG # _entity_name_sys.entity_id 3 _entity_name_sys.name 3.2.2.- # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DT)(DG)(DT)(NRI)(DA)(DT)(DC)(DT)(DT)' TGTXATCTT B ? 2 polydeoxyribonucleotide no no '(DA)(DA)(DA)(DG)(DA)(DT)(DA)(DA)(DC)(DA)' AAAGATAACA C ? 3 'polypeptide(L)' no no ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; ;MEFFGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQ RPVPPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLV FLLWGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; A ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 NRI n 1 5 DA n 1 6 DT n 1 7 DC n 1 8 DT n 1 9 DT n 2 1 DA n 2 2 DA n 2 3 DA n 2 4 DG n 2 5 DA n 2 6 DT n 2 7 DA n 2 8 DA n 2 9 DC n 2 10 DA n 3 1 MET n 3 2 GLU n 3 3 PHE n 3 4 PHE n 3 5 GLY n 3 6 GLU n 3 7 SER n 3 8 TRP n 3 9 LYS n 3 10 LYS n 3 11 HIS n 3 12 LEU n 3 13 SER n 3 14 GLY n 3 15 GLU n 3 16 PHE n 3 17 GLY n 3 18 LYS n 3 19 PRO n 3 20 TYR n 3 21 PHE n 3 22 ILE n 3 23 LYS n 3 24 LEU n 3 25 MET n 3 26 GLY n 3 27 PHE n 3 28 VAL n 3 29 ALA n 3 30 GLU n 3 31 GLU n 3 32 ARG n 3 33 LYS n 3 34 HIS n 3 35 TYR n 3 36 THR n 3 37 VAL n 3 38 TYR n 3 39 PRO n 3 40 PRO n 3 41 PRO n 3 42 HIS n 3 43 GLN n 3 44 VAL n 3 45 PHE n 3 46 THR n 3 47 TRP n 3 48 THR n 3 49 GLN n 3 50 MET n 3 51 CYS n 3 52 ASP n 3 53 ILE n 3 54 LYS n 3 55 ASP n 3 56 VAL n 3 57 LYS n 3 58 VAL n 3 59 VAL n 3 60 ILE n 3 61 LEU n 3 62 GLY n 3 63 GLN n 3 64 ASP n 3 65 PRO n 3 66 TYR n 3 67 HIS n 3 68 GLY n 3 69 PRO n 3 70 ASN n 3 71 GLN n 3 72 ALA n 3 73 HIS n 3 74 GLY n 3 75 LEU n 3 76 CYS n 3 77 PHE n 3 78 SER n 3 79 VAL n 3 80 GLN n 3 81 ARG n 3 82 PRO n 3 83 VAL n 3 84 PRO n 3 85 PRO n 3 86 PRO n 3 87 PRO n 3 88 SER n 3 89 LEU n 3 90 GLU n 3 91 ASN n 3 92 ILE n 3 93 TYR n 3 94 LYS n 3 95 GLU n 3 96 LEU n 3 97 SER n 3 98 THR n 3 99 ASP n 3 100 ILE n 3 101 GLU n 3 102 ASP n 3 103 PHE n 3 104 VAL n 3 105 HIS n 3 106 PRO n 3 107 GLY n 3 108 HIS n 3 109 GLY n 3 110 ASP n 3 111 LEU n 3 112 SER n 3 113 GLY n 3 114 TRP n 3 115 ALA n 3 116 LYS n 3 117 GLN n 3 118 GLY n 3 119 VAL n 3 120 LEU n 3 121 LEU n 3 122 LEU n 3 123 ASN n 3 124 ALA n 3 125 VAL n 3 126 LEU n 3 127 THR n 3 128 VAL n 3 129 ARG n 3 130 ALA n 3 131 HIS n 3 132 GLN n 3 133 ALA n 3 134 ASN n 3 135 SER n 3 136 HIS n 3 137 LYS n 3 138 GLU n 3 139 ARG n 3 140 GLY n 3 141 TRP n 3 142 GLU n 3 143 GLN n 3 144 PHE n 3 145 THR n 3 146 ASP n 3 147 ALA n 3 148 VAL n 3 149 VAL n 3 150 SER n 3 151 TRP n 3 152 LEU n 3 153 ASN n 3 154 GLN n 3 155 ASN n 3 156 SER n 3 157 ASN n 3 158 GLY n 3 159 LEU n 3 160 VAL n 3 161 PHE n 3 162 LEU n 3 163 LEU n 3 164 TRP n 3 165 GLY n 3 166 SER n 3 167 TYR n 3 168 ALA n 3 169 GLN n 3 170 LYS n 3 171 LYS n 3 172 GLY n 3 173 SER n 3 174 ALA n 3 175 ILE n 3 176 ASP n 3 177 ARG n 3 178 LYS n 3 179 ARG n 3 180 HIS n 3 181 HIS n 3 182 VAL n 3 183 LEU n 3 184 GLN n 3 185 THR n 3 186 ALA n 3 187 HIS n 3 188 PRO n 3 189 SER n 3 190 PRO n 3 191 LEU n 3 192 SER n 3 193 VAL n 3 194 TYR n 3 195 ARG n 3 196 GLY n 3 197 PHE n 3 198 PHE n 3 199 GLY n 3 200 CYS n 3 201 ARG n 3 202 HIS n 3 203 PHE n 3 204 SER n 3 205 LYS n 3 206 THR n 3 207 ASN n 3 208 GLU n 3 209 LEU n 3 210 LEU n 3 211 GLN n 3 212 LYS n 3 213 SER n 3 214 GLY n 3 215 LYS n 3 216 LYS n 3 217 PRO n 3 218 ILE n 3 219 ASP n 3 220 TRP n 3 221 LYS n 3 222 GLU n 3 223 LEU n # _entity_src_gen.entity_id 3 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'UNG OR DGU OR UNG15' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP UNG_HUMAN P13051 3 ;FGESWKKHLSGEFGKPYFIKLMGFVAEERKHYTVYPPPHQVFTWTQMCDIKDVKVVILGQDPYHGPNQAHGLCFSVQRPV PPPPSLENIYKELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLL WGSYAQKKGSAIDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKEL ; 85 ? 2 PDB 1Q3F 1Q3F 1 ? ? ? 3 PDB 1Q3F 1Q3F 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1Q3F A 4 ? 223 ? P13051 85 ? 304 ? 85 304 2 2 1Q3F B 1 ? 9 ? 1Q3F 2 ? 10 ? 2 10 3 3 1Q3F C 1 ? 10 ? 1Q3F 21 ? 30 ? 21 30 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1Q3F MET A 1 ? UNP P13051 ? ? 'cloning artifact' 82 1 1 1Q3F GLU A 2 ? UNP P13051 ? ? 'cloning artifact' 83 2 1 1Q3F PHE A 3 ? UNP P13051 ? ? 'cloning artifact' 84 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NRI 'DNA linking' . 'PHOSPHORIC ACID MONO-(4-HYDROXY-PYRROLIDIN-3-YLMETHYL) ESTER' ? 'C5 H12 N O5 P' 197.126 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 URA non-polymer . URACIL ? 'C4 H4 N2 O2' 112.087 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Q3F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.54 _exptl_crystal.density_percent_sol 51.50 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '18% PEG 4000, 10% dioxane, 100mM Hepes , pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'PEG 4000' ? ? ? 1 2 1 dioxane ? ? ? 1 3 1 Hepes ? ? ? 1 4 1 H2O ? ? ? 1 5 2 'PEG 4000' ? ? ? 1 6 2 dioxane ? ? ? 1 7 2 Hepes ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2003-01-22 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RU300' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1Q3F _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.9 _reflns.d_resolution_low 36.51 _reflns.number_all ? _reflns.number_obs 24682 _reflns.percent_possible_obs 94.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.06 _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.9 _reflns_shell.d_res_low 2.0 _reflns_shell.percent_possible_all 69.1 _reflns_shell.Rmerge_I_obs 0.245 _reflns_shell.pdbx_Rsym_value 0.245 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 2.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Q3F _refine.ls_d_res_high 1.9 _refine.ls_d_res_low 36.52 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_ls_sigma_I 0 _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 24682 _refine.ls_number_reflns_R_free 2383 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1903 _refine.ls_R_factor_R_work 0.1903 _refine.ls_R_factor_R_free 0.2353 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'PDB entry 1AKX' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1808 _refine_hist.pdbx_number_atoms_nucleic_acid 375 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 275 _refine_hist.number_atoms_total 2471 _refine_hist.d_res_high 1.9 _refine_hist.d_res_low 36.52 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.006608 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d 1.33519 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.000 1.5 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.544 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 1.847 2.0 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 2.809 2.5 ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 dna-rna_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 water_rep.param water.top 'X-RAY DIFFRACTION' 4 ion.param ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 1Q3F _struct.title ;Uracil DNA glycosylase bound to a cationic 1-aza-2'-deoxyribose-containing DNA ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q3F _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'UDG, DNA repair, HYDROLASE-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 6 ? H N N 6 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY C 5 ? SER C 13 ? GLY A 86 SER A 94 1 ? 9 HELX_P HELX_P2 2 GLY C 14 ? PHE C 16 ? GLY A 95 PHE A 97 5 ? 3 HELX_P HELX_P3 3 LYS C 18 ? TYR C 35 ? LYS A 99 TYR A 116 1 ? 18 HELX_P HELX_P4 4 PRO C 40 ? VAL C 44 ? PRO A 121 VAL A 125 5 ? 5 HELX_P HELX_P5 5 PHE C 45 ? GLN C 49 ? PHE A 126 GLN A 130 5 ? 5 HELX_P HELX_P6 6 ASP C 52 ? VAL C 56 ? ASP A 133 VAL A 137 5 ? 5 HELX_P HELX_P7 7 PRO C 86 ? ILE C 100 ? PRO A 167 ILE A 181 1 ? 15 HELX_P HELX_P8 8 LEU C 111 ? LYS C 116 ? LEU A 192 LYS A 197 1 ? 6 HELX_P HELX_P9 9 GLY C 140 ? SER C 156 ? GLY A 221 SER A 237 1 ? 17 HELX_P HELX_P10 10 TYR C 167 ? ILE C 175 ? TYR A 248 ILE A 256 5 ? 9 HELX_P HELX_P11 11 SER C 192 ? GLY C 196 ? SER A 273 GLY A 277 5 ? 5 HELX_P HELX_P12 12 ARG C 201 ? SER C 213 ? ARG A 282 SER A 294 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DT 3 "O3'" ? ? ? 1_555 A NRI 4 P ? ? B DT 4 B NRI 5 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale2 covale both ? A NRI 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? B NRI 5 B DA 6 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 10 N1 ? ? B DT 2 C DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 10 N6 ? ? B DT 2 C DA 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 9 N3 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 9 O2 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 9 N4 ? ? B DG 3 C DC 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 8 N1 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 8 N6 ? ? B DT 4 C DA 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 6 N3 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 6 O4 ? ? B DA 6 C DT 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 5 N1 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 5 N6 ? ? B DT 7 C DA 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 7 N3 ? ? ? 1_555 B DG 4 N1 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DG 4 O6 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 7 O2 ? ? ? 1_555 B DG 4 N2 ? ? B DC 8 C DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 3 N1 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 3 N6 ? ? B DT 9 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 2 N1 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 2 N6 ? ? B DT 10 C DA 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TYR 38 C . ? TYR 119 A PRO 39 C ? PRO 120 A 1 -0.31 2 ARG 81 C . ? ARG 162 A PRO 82 C ? PRO 163 A 1 0.13 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL C 37 ? TYR C 38 ? VAL A 118 TYR A 119 A 2 VAL C 128 ? ARG C 129 ? VAL A 209 ARG A 210 B 1 VAL C 119 ? ASN C 123 ? VAL A 200 ASN A 204 B 2 VAL C 58 ? GLY C 62 ? VAL A 139 GLY A 143 B 3 VAL C 160 ? TRP C 164 ? VAL A 241 TRP A 245 B 4 HIS C 181 ? THR C 185 ? HIS A 262 THR A 266 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR C 38 ? N TYR A 119 O VAL C 128 ? O VAL A 209 B 1 2 O LEU C 120 ? O LEU A 201 N ILE C 60 ? N ILE A 141 B 2 3 N VAL C 59 ? N VAL A 140 O LEU C 162 ? O LEU A 243 B 3 4 N PHE C 161 ? N PHE A 242 O HIS C 181 ? O HIS A 262 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 3127 ? 4 'BINDING SITE FOR RESIDUE PO4 A 3127' AC2 Software B URA 11 ? 10 'BINDING SITE FOR RESIDUE URA B 11' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG C 32 ? ARG A 113 . ? 1_555 ? 2 AC1 4 THR C 36 ? THR A 117 . ? 1_555 ? 3 AC1 4 VAL C 37 ? VAL A 118 . ? 1_555 ? 4 AC1 4 HOH H . ? HOH A 3191 . ? 1_555 ? 5 AC2 10 GLY C 62 ? GLY A 143 . ? 1_555 ? 6 AC2 10 GLN C 63 ? GLN A 144 . ? 1_555 ? 7 AC2 10 ASP C 64 ? ASP A 145 . ? 1_555 ? 8 AC2 10 TYR C 66 ? TYR A 147 . ? 1_555 ? 9 AC2 10 CYS C 76 ? CYS A 157 . ? 1_555 ? 10 AC2 10 PHE C 77 ? PHE A 158 . ? 1_555 ? 11 AC2 10 ASN C 123 ? ASN A 204 . ? 1_555 ? 12 AC2 10 HIS C 187 ? HIS A 268 . ? 1_555 ? 13 AC2 10 NRI A 4 ? NRI B 5 . ? 1_555 ? 14 AC2 10 HOH F . ? HOH B 12 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Q3F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Q3F _atom_sites.fract_transf_matrix[1][1] 0.020559 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015177 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010059 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 2 2 DT THY B . n A 1 2 DG 2 3 3 DG GUA B . n A 1 3 DT 3 4 4 DT THY B . n A 1 4 NRI 4 5 5 NRI UXI B . n A 1 5 DA 5 6 6 DA ADE B . n A 1 6 DT 6 7 7 DT THY B . n A 1 7 DC 7 8 8 DC CYT B . n A 1 8 DT 8 9 9 DT THY B . n A 1 9 DT 9 10 10 DT THY B . n B 2 1 DA 1 21 21 DA ADE C . n B 2 2 DA 2 22 22 DA ADE C . n B 2 3 DA 3 23 23 DA ADE C . n B 2 4 DG 4 24 24 DG GUA C . n B 2 5 DA 5 25 25 DA ADE C . n B 2 6 DT 6 26 26 DT THY C . n B 2 7 DA 7 27 27 DA ADE C . n B 2 8 DA 8 28 28 DA ADE C . n B 2 9 DC 9 29 29 DC CYT C . n B 2 10 DA 10 30 30 DA ADE C . n C 3 1 MET 1 82 82 MET MET A . n C 3 2 GLU 2 83 83 GLU GLU A . n C 3 3 PHE 3 84 84 PHE PHE A . n C 3 4 PHE 4 85 85 PHE PHE A . n C 3 5 GLY 5 86 86 GLY GLY A . n C 3 6 GLU 6 87 87 GLU GLU A . n C 3 7 SER 7 88 88 SER SER A . n C 3 8 TRP 8 89 89 TRP TRP A . n C 3 9 LYS 9 90 90 LYS LYS A . n C 3 10 LYS 10 91 91 LYS LYS A . n C 3 11 HIS 11 92 92 HIS HIS A . n C 3 12 LEU 12 93 93 LEU LEU A . n C 3 13 SER 13 94 94 SER SER A . n C 3 14 GLY 14 95 95 GLY GLY A . n C 3 15 GLU 15 96 96 GLU GLU A . n C 3 16 PHE 16 97 97 PHE PHE A . n C 3 17 GLY 17 98 98 GLY GLY A . n C 3 18 LYS 18 99 99 LYS LYS A . n C 3 19 PRO 19 100 100 PRO PRO A . n C 3 20 TYR 20 101 101 TYR TYR A . n C 3 21 PHE 21 102 102 PHE PHE A . n C 3 22 ILE 22 103 103 ILE ILE A . n C 3 23 LYS 23 104 104 LYS LYS A . n C 3 24 LEU 24 105 105 LEU LEU A . n C 3 25 MET 25 106 106 MET MET A . n C 3 26 GLY 26 107 107 GLY GLY A . n C 3 27 PHE 27 108 108 PHE PHE A . n C 3 28 VAL 28 109 109 VAL VAL A . n C 3 29 ALA 29 110 110 ALA ALA A . n C 3 30 GLU 30 111 111 GLU GLU A . n C 3 31 GLU 31 112 112 GLU GLU A . n C 3 32 ARG 32 113 113 ARG ARG A . n C 3 33 LYS 33 114 114 LYS LYS A . n C 3 34 HIS 34 115 115 HIS HIS A . n C 3 35 TYR 35 116 116 TYR TYR A . n C 3 36 THR 36 117 117 THR THR A . n C 3 37 VAL 37 118 118 VAL VAL A . n C 3 38 TYR 38 119 119 TYR TYR A . n C 3 39 PRO 39 120 120 PRO PRO A . n C 3 40 PRO 40 121 121 PRO PRO A . n C 3 41 PRO 41 122 122 PRO PRO A . n C 3 42 HIS 42 123 123 HIS HIS A . n C 3 43 GLN 43 124 124 GLN GLN A . n C 3 44 VAL 44 125 125 VAL VAL A . n C 3 45 PHE 45 126 126 PHE PHE A . n C 3 46 THR 46 127 127 THR THR A . n C 3 47 TRP 47 128 128 TRP TRP A . n C 3 48 THR 48 129 129 THR THR A . n C 3 49 GLN 49 130 130 GLN GLN A . n C 3 50 MET 50 131 131 MET MET A . n C 3 51 CYS 51 132 132 CYS CYS A . n C 3 52 ASP 52 133 133 ASP ASP A . n C 3 53 ILE 53 134 134 ILE ILE A . n C 3 54 LYS 54 135 135 LYS LYS A . n C 3 55 ASP 55 136 136 ASP ASP A . n C 3 56 VAL 56 137 137 VAL VAL A . n C 3 57 LYS 57 138 138 LYS LYS A . n C 3 58 VAL 58 139 139 VAL VAL A . n C 3 59 VAL 59 140 140 VAL VAL A . n C 3 60 ILE 60 141 141 ILE ILE A . n C 3 61 LEU 61 142 142 LEU LEU A . n C 3 62 GLY 62 143 143 GLY GLY A . n C 3 63 GLN 63 144 144 GLN GLN A . n C 3 64 ASP 64 145 145 ASP ASP A . n C 3 65 PRO 65 146 146 PRO PRO A . n C 3 66 TYR 66 147 147 TYR TYR A . n C 3 67 HIS 67 148 148 HIS HIS A . n C 3 68 GLY 68 149 149 GLY GLY A . n C 3 69 PRO 69 150 150 PRO PRO A . n C 3 70 ASN 70 151 151 ASN ASN A . n C 3 71 GLN 71 152 152 GLN GLN A . n C 3 72 ALA 72 153 153 ALA ALA A . n C 3 73 HIS 73 154 154 HIS HIS A . n C 3 74 GLY 74 155 155 GLY GLY A . n C 3 75 LEU 75 156 156 LEU LEU A . n C 3 76 CYS 76 157 157 CYS CYS A . n C 3 77 PHE 77 158 158 PHE PHE A . n C 3 78 SER 78 159 159 SER SER A . n C 3 79 VAL 79 160 160 VAL VAL A . n C 3 80 GLN 80 161 161 GLN GLN A . n C 3 81 ARG 81 162 162 ARG ARG A . n C 3 82 PRO 82 163 163 PRO PRO A . n C 3 83 VAL 83 164 164 VAL VAL A . n C 3 84 PRO 84 165 165 PRO PRO A . n C 3 85 PRO 85 166 166 PRO PRO A . n C 3 86 PRO 86 167 167 PRO PRO A . n C 3 87 PRO 87 168 168 PRO PRO A . n C 3 88 SER 88 169 169 SER SER A . n C 3 89 LEU 89 170 170 LEU LEU A . n C 3 90 GLU 90 171 171 GLU GLU A . n C 3 91 ASN 91 172 172 ASN ASN A . n C 3 92 ILE 92 173 173 ILE ILE A . n C 3 93 TYR 93 174 174 TYR TYR A . n C 3 94 LYS 94 175 175 LYS LYS A . n C 3 95 GLU 95 176 176 GLU GLU A . n C 3 96 LEU 96 177 177 LEU LEU A . n C 3 97 SER 97 178 178 SER SER A . n C 3 98 THR 98 179 179 THR THR A . n C 3 99 ASP 99 180 180 ASP ASP A . n C 3 100 ILE 100 181 181 ILE ILE A . n C 3 101 GLU 101 182 182 GLU GLU A . n C 3 102 ASP 102 183 183 ASP ASP A . n C 3 103 PHE 103 184 184 PHE PHE A . n C 3 104 VAL 104 185 185 VAL VAL A . n C 3 105 HIS 105 186 186 HIS HIS A . n C 3 106 PRO 106 187 187 PRO PRO A . n C 3 107 GLY 107 188 188 GLY GLY A . n C 3 108 HIS 108 189 189 HIS HIS A . n C 3 109 GLY 109 190 190 GLY GLY A . n C 3 110 ASP 110 191 191 ASP ASP A . n C 3 111 LEU 111 192 192 LEU LEU A . n C 3 112 SER 112 193 193 SER SER A . n C 3 113 GLY 113 194 194 GLY GLY A . n C 3 114 TRP 114 195 195 TRP TRP A . n C 3 115 ALA 115 196 196 ALA ALA A . n C 3 116 LYS 116 197 197 LYS LYS A . n C 3 117 GLN 117 198 198 GLN GLN A . n C 3 118 GLY 118 199 199 GLY GLY A . n C 3 119 VAL 119 200 200 VAL VAL A . n C 3 120 LEU 120 201 201 LEU LEU A . n C 3 121 LEU 121 202 202 LEU LEU A . n C 3 122 LEU 122 203 203 LEU LEU A . n C 3 123 ASN 123 204 204 ASN ASN A . n C 3 124 ALA 124 205 205 ALA ALA A . n C 3 125 VAL 125 206 206 VAL VAL A . n C 3 126 LEU 126 207 207 LEU LEU A . n C 3 127 THR 127 208 208 THR THR A . n C 3 128 VAL 128 209 209 VAL VAL A . n C 3 129 ARG 129 210 210 ARG ARG A . n C 3 130 ALA 130 211 211 ALA ALA A . n C 3 131 HIS 131 212 212 HIS HIS A . n C 3 132 GLN 132 213 213 GLN GLN A . n C 3 133 ALA 133 214 214 ALA ALA A . n C 3 134 ASN 134 215 215 ASN ASN A . n C 3 135 SER 135 216 216 SER SER A . n C 3 136 HIS 136 217 217 HIS HIS A . n C 3 137 LYS 137 218 218 LYS LYS A . n C 3 138 GLU 138 219 219 GLU GLU A . n C 3 139 ARG 139 220 220 ARG ARG A . n C 3 140 GLY 140 221 221 GLY GLY A . n C 3 141 TRP 141 222 222 TRP TRP A . n C 3 142 GLU 142 223 223 GLU GLU A . n C 3 143 GLN 143 224 224 GLN GLN A . n C 3 144 PHE 144 225 225 PHE PHE A . n C 3 145 THR 145 226 226 THR THR A . n C 3 146 ASP 146 227 227 ASP ASP A . n C 3 147 ALA 147 228 228 ALA ALA A . n C 3 148 VAL 148 229 229 VAL VAL A . n C 3 149 VAL 149 230 230 VAL VAL A . n C 3 150 SER 150 231 231 SER SER A . n C 3 151 TRP 151 232 232 TRP TRP A . n C 3 152 LEU 152 233 233 LEU LEU A . n C 3 153 ASN 153 234 234 ASN ASN A . n C 3 154 GLN 154 235 235 GLN GLN A . n C 3 155 ASN 155 236 236 ASN ASN A . n C 3 156 SER 156 237 237 SER SER A . n C 3 157 ASN 157 238 238 ASN ASN A . n C 3 158 GLY 158 239 239 GLY GLY A . n C 3 159 LEU 159 240 240 LEU LEU A . n C 3 160 VAL 160 241 241 VAL VAL A . n C 3 161 PHE 161 242 242 PHE PHE A . n C 3 162 LEU 162 243 243 LEU LEU A . n C 3 163 LEU 163 244 244 LEU LEU A . n C 3 164 TRP 164 245 245 TRP TRP A . n C 3 165 GLY 165 246 246 GLY GLY A . n C 3 166 SER 166 247 247 SER SER A . n C 3 167 TYR 167 248 248 TYR TYR A . n C 3 168 ALA 168 249 249 ALA ALA A . n C 3 169 GLN 169 250 250 GLN GLN A . n C 3 170 LYS 170 251 251 LYS LYS A . n C 3 171 LYS 171 252 252 LYS LYS A . n C 3 172 GLY 172 253 253 GLY GLY A . n C 3 173 SER 173 254 254 SER SER A . n C 3 174 ALA 174 255 255 ALA ALA A . n C 3 175 ILE 175 256 256 ILE ILE A . n C 3 176 ASP 176 257 257 ASP ASP A . n C 3 177 ARG 177 258 258 ARG ARG A . n C 3 178 LYS 178 259 259 LYS LYS A . n C 3 179 ARG 179 260 260 ARG ARG A . n C 3 180 HIS 180 261 261 HIS HIS A . n C 3 181 HIS 181 262 262 HIS HIS A . n C 3 182 VAL 182 263 263 VAL VAL A . n C 3 183 LEU 183 264 264 LEU LEU A . n C 3 184 GLN 184 265 265 GLN GLN A . n C 3 185 THR 185 266 266 THR THR A . n C 3 186 ALA 186 267 267 ALA ALA A . n C 3 187 HIS 187 268 268 HIS HIS A . n C 3 188 PRO 188 269 269 PRO PRO A . n C 3 189 SER 189 270 270 SER SER A . n C 3 190 PRO 190 271 271 PRO PRO A . n C 3 191 LEU 191 272 272 LEU LEU A . n C 3 192 SER 192 273 273 SER SER A . n C 3 193 VAL 193 274 274 VAL VAL A . n C 3 194 TYR 194 275 275 TYR TYR A . n C 3 195 ARG 195 276 276 ARG ARG A . n C 3 196 GLY 196 277 277 GLY GLY A . n C 3 197 PHE 197 278 278 PHE PHE A . n C 3 198 PHE 198 279 279 PHE PHE A . n C 3 199 GLY 199 280 280 GLY GLY A . n C 3 200 CYS 200 281 281 CYS CYS A . n C 3 201 ARG 201 282 282 ARG ARG A . n C 3 202 HIS 202 283 283 HIS HIS A . n C 3 203 PHE 203 284 284 PHE PHE A . n C 3 204 SER 204 285 285 SER SER A . n C 3 205 LYS 205 286 286 LYS LYS A . n C 3 206 THR 206 287 287 THR THR A . n C 3 207 ASN 207 288 288 ASN ASN A . n C 3 208 GLU 208 289 289 GLU GLU A . n C 3 209 LEU 209 290 290 LEU LEU A . n C 3 210 LEU 210 291 291 LEU LEU A . n C 3 211 GLN 211 292 292 GLN GLN A . n C 3 212 LYS 212 293 293 LYS LYS A . n C 3 213 SER 213 294 294 SER SER A . n C 3 214 GLY 214 295 295 GLY GLY A . n C 3 215 LYS 215 296 296 LYS LYS A . n C 3 216 LYS 216 297 297 LYS LYS A . n C 3 217 PRO 217 298 298 PRO PRO A . n C 3 218 ILE 218 299 299 ILE ILE A . n C 3 219 ASP 219 300 300 ASP ASP A . n C 3 220 TRP 220 301 301 TRP TRP A . n C 3 221 LYS 221 302 302 LYS LYS A . n C 3 222 GLU 222 303 303 GLU GLU A . n C 3 223 LEU 223 304 304 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 URA 1 11 5 URA UXI B . E 5 PO4 1 3127 3127 PO4 PO4 A . F 6 HOH 1 12 3 HOH HOH B . F 6 HOH 2 13 6 HOH HOH B . F 6 HOH 3 14 7 HOH HOH B . F 6 HOH 4 15 11 HOH HOH B . F 6 HOH 5 16 26 HOH HOH B . F 6 HOH 6 17 32 HOH HOH B . F 6 HOH 7 18 45 HOH HOH B . F 6 HOH 8 19 61 HOH HOH B . F 6 HOH 9 20 87 HOH HOH B . F 6 HOH 10 21 116 HOH HOH B . F 6 HOH 11 22 145 HOH HOH B . F 6 HOH 12 23 151 HOH HOH B . F 6 HOH 13 24 195 HOH HOH B . F 6 HOH 14 25 199 HOH HOH B . F 6 HOH 15 26 219 HOH HOH B . F 6 HOH 16 27 231 HOH HOH B . F 6 HOH 17 28 260 HOH HOH B . F 6 HOH 18 29 264 HOH HOH B . F 6 HOH 19 30 270 HOH HOH B . F 6 HOH 20 31 286 HOH HOH B . F 6 HOH 21 32 315 HOH HOH B . G 6 HOH 1 40 40 HOH HOH C . G 6 HOH 2 86 86 HOH HOH C . G 6 HOH 3 121 121 HOH HOH C . G 6 HOH 4 130 130 HOH HOH C . G 6 HOH 5 137 137 HOH HOH C . G 6 HOH 6 149 149 HOH HOH C . G 6 HOH 7 189 189 HOH HOH C . G 6 HOH 8 225 225 HOH HOH C . G 6 HOH 9 234 234 HOH HOH C . G 6 HOH 10 247 247 HOH HOH C . G 6 HOH 11 263 263 HOH HOH C . G 6 HOH 12 321 321 HOH HOH C . G 6 HOH 13 346 346 HOH HOH C . H 6 HOH 1 3128 1 HOH HOH A . H 6 HOH 2 3129 2 HOH HOH A . H 6 HOH 3 3130 4 HOH HOH A . H 6 HOH 4 3131 5 HOH HOH A . H 6 HOH 5 3132 8 HOH HOH A . H 6 HOH 6 3133 9 HOH HOH A . H 6 HOH 7 3134 10 HOH HOH A . H 6 HOH 8 3135 12 HOH HOH A . H 6 HOH 9 3136 13 HOH HOH A . H 6 HOH 10 3137 14 HOH HOH A . H 6 HOH 11 3138 15 HOH HOH A . H 6 HOH 12 3139 16 HOH HOH A . H 6 HOH 13 3140 17 HOH HOH A . H 6 HOH 14 3141 18 HOH HOH A . H 6 HOH 15 3142 19 HOH HOH A . H 6 HOH 16 3143 20 HOH HOH A . H 6 HOH 17 3144 21 HOH HOH A . H 6 HOH 18 3145 22 HOH HOH A . H 6 HOH 19 3146 23 HOH HOH A . H 6 HOH 20 3147 24 HOH HOH A . H 6 HOH 21 3148 25 HOH HOH A . H 6 HOH 22 3149 27 HOH HOH A . H 6 HOH 23 3150 28 HOH HOH A . H 6 HOH 24 3151 29 HOH HOH A . H 6 HOH 25 3152 30 HOH HOH A . H 6 HOH 26 3153 31 HOH HOH A . H 6 HOH 27 3154 33 HOH HOH A . H 6 HOH 28 3155 34 HOH HOH A . H 6 HOH 29 3156 35 HOH HOH A . H 6 HOH 30 3157 36 HOH HOH A . H 6 HOH 31 3158 37 HOH HOH A . H 6 HOH 32 3159 38 HOH HOH A . H 6 HOH 33 3160 39 HOH HOH A . H 6 HOH 34 3161 41 HOH HOH A . H 6 HOH 35 3162 42 HOH HOH A . H 6 HOH 36 3163 43 HOH HOH A . H 6 HOH 37 3164 44 HOH HOH A . H 6 HOH 38 3165 46 HOH HOH A . H 6 HOH 39 3166 47 HOH HOH A . H 6 HOH 40 3167 48 HOH HOH A . H 6 HOH 41 3168 49 HOH HOH A . H 6 HOH 42 3169 50 HOH HOH A . H 6 HOH 43 3170 51 HOH HOH A . H 6 HOH 44 3171 52 HOH HOH A . H 6 HOH 45 3172 53 HOH HOH A . H 6 HOH 46 3173 54 HOH HOH A . H 6 HOH 47 3174 55 HOH HOH A . H 6 HOH 48 3175 56 HOH HOH A . H 6 HOH 49 3176 57 HOH HOH A . H 6 HOH 50 3177 58 HOH HOH A . H 6 HOH 51 3178 59 HOH HOH A . H 6 HOH 52 3179 60 HOH HOH A . H 6 HOH 53 3180 62 HOH HOH A . H 6 HOH 54 3181 63 HOH HOH A . H 6 HOH 55 3182 64 HOH HOH A . H 6 HOH 56 3183 65 HOH HOH A . H 6 HOH 57 3184 66 HOH HOH A . H 6 HOH 58 3185 67 HOH HOH A . H 6 HOH 59 3186 68 HOH HOH A . H 6 HOH 60 3187 69 HOH HOH A . H 6 HOH 61 3188 70 HOH HOH A . H 6 HOH 62 3189 71 HOH HOH A . H 6 HOH 63 3190 72 HOH HOH A . H 6 HOH 64 3191 73 HOH HOH A . H 6 HOH 65 3192 74 HOH HOH A . H 6 HOH 66 3193 75 HOH HOH A . H 6 HOH 67 3194 76 HOH HOH A . H 6 HOH 68 3195 77 HOH HOH A . H 6 HOH 69 3196 78 HOH HOH A . H 6 HOH 70 3197 79 HOH HOH A . H 6 HOH 71 3198 80 HOH HOH A . H 6 HOH 72 3199 81 HOH HOH A . H 6 HOH 73 3200 82 HOH HOH A . H 6 HOH 74 3201 83 HOH HOH A . H 6 HOH 75 3202 84 HOH HOH A . H 6 HOH 76 3203 85 HOH HOH A . H 6 HOH 77 3204 88 HOH HOH A . H 6 HOH 78 3205 89 HOH HOH A . H 6 HOH 79 3206 90 HOH HOH A . H 6 HOH 80 3207 91 HOH HOH A . H 6 HOH 81 3208 92 HOH HOH A . H 6 HOH 82 3209 93 HOH HOH A . H 6 HOH 83 3210 94 HOH HOH A . H 6 HOH 84 3211 95 HOH HOH A . H 6 HOH 85 3212 96 HOH HOH A . H 6 HOH 86 3213 97 HOH HOH A . H 6 HOH 87 3214 98 HOH HOH A . H 6 HOH 88 3215 99 HOH HOH A . H 6 HOH 89 3216 100 HOH HOH A . H 6 HOH 90 3217 101 HOH HOH A . H 6 HOH 91 3218 102 HOH HOH A . H 6 HOH 92 3219 103 HOH HOH A . H 6 HOH 93 3220 104 HOH HOH A . H 6 HOH 94 3221 105 HOH HOH A . H 6 HOH 95 3222 106 HOH HOH A . H 6 HOH 96 3223 107 HOH HOH A . H 6 HOH 97 3224 108 HOH HOH A . H 6 HOH 98 3225 109 HOH HOH A . H 6 HOH 99 3226 110 HOH HOH A . H 6 HOH 100 3227 111 HOH HOH A . H 6 HOH 101 3228 112 HOH HOH A . H 6 HOH 102 3229 113 HOH HOH A . H 6 HOH 103 3230 114 HOH HOH A . H 6 HOH 104 3231 115 HOH HOH A . H 6 HOH 105 3232 117 HOH HOH A . H 6 HOH 106 3233 118 HOH HOH A . H 6 HOH 107 3234 119 HOH HOH A . H 6 HOH 108 3235 120 HOH HOH A . H 6 HOH 109 3236 122 HOH HOH A . H 6 HOH 110 3237 123 HOH HOH A . H 6 HOH 111 3238 124 HOH HOH A . H 6 HOH 112 3239 125 HOH HOH A . H 6 HOH 113 3240 126 HOH HOH A . H 6 HOH 114 3241 127 HOH HOH A . H 6 HOH 115 3242 128 HOH HOH A . H 6 HOH 116 3243 129 HOH HOH A . H 6 HOH 117 3244 131 HOH HOH A . H 6 HOH 118 3245 133 HOH HOH A . H 6 HOH 119 3246 134 HOH HOH A . H 6 HOH 120 3247 135 HOH HOH A . H 6 HOH 121 3248 136 HOH HOH A . H 6 HOH 122 3249 140 HOH HOH A . H 6 HOH 123 3250 141 HOH HOH A . H 6 HOH 124 3251 142 HOH HOH A . H 6 HOH 125 3252 143 HOH HOH A . H 6 HOH 126 3253 144 HOH HOH A . H 6 HOH 127 3254 146 HOH HOH A . H 6 HOH 128 3255 147 HOH HOH A . H 6 HOH 129 3256 148 HOH HOH A . H 6 HOH 130 3257 150 HOH HOH A . H 6 HOH 131 3258 152 HOH HOH A . H 6 HOH 132 3259 153 HOH HOH A . H 6 HOH 133 3260 154 HOH HOH A . H 6 HOH 134 3261 155 HOH HOH A . H 6 HOH 135 3262 156 HOH HOH A . H 6 HOH 136 3263 157 HOH HOH A . H 6 HOH 137 3264 158 HOH HOH A . H 6 HOH 138 3265 159 HOH HOH A . H 6 HOH 139 3266 160 HOH HOH A . H 6 HOH 140 3267 162 HOH HOH A . H 6 HOH 141 3268 163 HOH HOH A . H 6 HOH 142 3269 164 HOH HOH A . H 6 HOH 143 3270 167 HOH HOH A . H 6 HOH 144 3271 168 HOH HOH A . H 6 HOH 145 3272 171 HOH HOH A . H 6 HOH 146 3273 172 HOH HOH A . H 6 HOH 147 3274 173 HOH HOH A . H 6 HOH 148 3275 175 HOH HOH A . H 6 HOH 149 3276 176 HOH HOH A . H 6 HOH 150 3277 177 HOH HOH A . H 6 HOH 151 3278 178 HOH HOH A . H 6 HOH 152 3279 179 HOH HOH A . H 6 HOH 153 3280 180 HOH HOH A . H 6 HOH 154 3281 181 HOH HOH A . H 6 HOH 155 3282 182 HOH HOH A . H 6 HOH 156 3283 183 HOH HOH A . H 6 HOH 157 3284 184 HOH HOH A . H 6 HOH 158 3285 185 HOH HOH A . H 6 HOH 159 3286 186 HOH HOH A . H 6 HOH 160 3287 187 HOH HOH A . H 6 HOH 161 3288 188 HOH HOH A . H 6 HOH 162 3289 190 HOH HOH A . H 6 HOH 163 3290 191 HOH HOH A . H 6 HOH 164 3291 192 HOH HOH A . H 6 HOH 165 3292 193 HOH HOH A . H 6 HOH 166 3293 194 HOH HOH A . H 6 HOH 167 3294 196 HOH HOH A . H 6 HOH 168 3295 197 HOH HOH A . H 6 HOH 169 3296 198 HOH HOH A . H 6 HOH 170 3297 200 HOH HOH A . H 6 HOH 171 3298 201 HOH HOH A . H 6 HOH 172 3299 202 HOH HOH A . H 6 HOH 173 3300 203 HOH HOH A . H 6 HOH 174 3301 204 HOH HOH A . H 6 HOH 175 3302 205 HOH HOH A . H 6 HOH 176 3303 206 HOH HOH A . H 6 HOH 177 3304 207 HOH HOH A . H 6 HOH 178 3305 208 HOH HOH A . H 6 HOH 179 3306 209 HOH HOH A . H 6 HOH 180 3307 210 HOH HOH A . H 6 HOH 181 3308 211 HOH HOH A . H 6 HOH 182 3309 212 HOH HOH A . H 6 HOH 183 3310 213 HOH HOH A . H 6 HOH 184 3311 214 HOH HOH A . H 6 HOH 185 3312 215 HOH HOH A . H 6 HOH 186 3313 216 HOH HOH A . H 6 HOH 187 3314 217 HOH HOH A . H 6 HOH 188 3315 218 HOH HOH A . H 6 HOH 189 3316 220 HOH HOH A . H 6 HOH 190 3317 221 HOH HOH A . H 6 HOH 191 3318 222 HOH HOH A . H 6 HOH 192 3319 226 HOH HOH A . H 6 HOH 193 3320 229 HOH HOH A . H 6 HOH 194 3321 232 HOH HOH A . H 6 HOH 195 3322 235 HOH HOH A . H 6 HOH 196 3323 236 HOH HOH A . H 6 HOH 197 3324 238 HOH HOH A . H 6 HOH 198 3325 239 HOH HOH A . H 6 HOH 199 3326 240 HOH HOH A . H 6 HOH 200 3327 244 HOH HOH A . H 6 HOH 201 3328 246 HOH HOH A . H 6 HOH 202 3329 248 HOH HOH A . H 6 HOH 203 3330 252 HOH HOH A . H 6 HOH 204 3331 253 HOH HOH A . H 6 HOH 205 3332 254 HOH HOH A . H 6 HOH 206 3333 258 HOH HOH A . H 6 HOH 207 3334 259 HOH HOH A . H 6 HOH 208 3335 265 HOH HOH A . H 6 HOH 209 3336 266 HOH HOH A . H 6 HOH 210 3337 268 HOH HOH A . H 6 HOH 211 3338 274 HOH HOH A . H 6 HOH 212 3339 275 HOH HOH A . H 6 HOH 213 3340 277 HOH HOH A . H 6 HOH 214 3341 279 HOH HOH A . H 6 HOH 215 3342 280 HOH HOH A . H 6 HOH 216 3343 281 HOH HOH A . H 6 HOH 217 3344 282 HOH HOH A . H 6 HOH 218 3345 288 HOH HOH A . H 6 HOH 219 3346 296 HOH HOH A . H 6 HOH 220 3347 300 HOH HOH A . H 6 HOH 221 3348 308 HOH HOH A . H 6 HOH 222 3349 309 HOH HOH A . H 6 HOH 223 3350 310 HOH HOH A . H 6 HOH 224 3351 311 HOH HOH A . H 6 HOH 225 3352 313 HOH HOH A . H 6 HOH 226 3353 314 HOH HOH A . H 6 HOH 227 3354 316 HOH HOH A . H 6 HOH 228 3355 317 HOH HOH A . H 6 HOH 229 3356 318 HOH HOH A . H 6 HOH 230 3357 319 HOH HOH A . H 6 HOH 231 3358 320 HOH HOH A . H 6 HOH 232 3359 322 HOH HOH A . H 6 HOH 233 3360 326 HOH HOH A . H 6 HOH 234 3361 328 HOH HOH A . H 6 HOH 235 3362 330 HOH HOH A . H 6 HOH 236 3363 332 HOH HOH A . H 6 HOH 237 3364 341 HOH HOH A . H 6 HOH 238 3365 342 HOH HOH A . H 6 HOH 239 3366 353 HOH HOH A . H 6 HOH 240 3367 359 HOH HOH A . H 6 HOH 241 3368 361 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2015-10-07 5 'Structure model' 1 4 2023-08-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Structure summary' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' 7 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' chem_comp_atom 2 5 'Structure model' chem_comp_bond 3 5 'Structure model' database_2 4 5 'Structure model' pdbx_initial_refinement_model 5 5 'Structure model' struct_conn 6 5 'Structure model' struct_ref_seq_dif 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 5 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 6 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 7 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 8 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 9 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 10 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 11 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 12 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 13 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 14 5 'Structure model' '_struct_ref_seq_dif.details' 15 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 16 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 17 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MOLREP phasing . ? 3 CNS refinement . ? 4 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN The NRI and URA is a transition state analog. This transition state analog has an uracil and a modified deoxyribose that are not covalently connected to each other. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 152 ? ? -92.13 -72.80 2 1 HIS A 154 ? ? -140.83 20.41 3 1 PHE A 158 ? ? 67.99 -3.38 4 1 SER A 273 ? ? -147.80 -8.60 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id DA _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 28 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.080 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 HOH O O N N 301 HOH H1 H N N 302 HOH H2 H N N 303 ILE N N N N 304 ILE CA C N S 305 ILE C C N N 306 ILE O O N N 307 ILE CB C N S 308 ILE CG1 C N N 309 ILE CG2 C N N 310 ILE CD1 C N N 311 ILE OXT O N N 312 ILE H H N N 313 ILE H2 H N N 314 ILE HA H N N 315 ILE HB H N N 316 ILE HG12 H N N 317 ILE HG13 H N N 318 ILE HG21 H N N 319 ILE HG22 H N N 320 ILE HG23 H N N 321 ILE HD11 H N N 322 ILE HD12 H N N 323 ILE HD13 H N N 324 ILE HXT H N N 325 LEU N N N N 326 LEU CA C N S 327 LEU C C N N 328 LEU O O N N 329 LEU CB C N N 330 LEU CG C N N 331 LEU CD1 C N N 332 LEU CD2 C N N 333 LEU OXT O N N 334 LEU H H N N 335 LEU H2 H N N 336 LEU HA H N N 337 LEU HB2 H N N 338 LEU HB3 H N N 339 LEU HG H N N 340 LEU HD11 H N N 341 LEU HD12 H N N 342 LEU HD13 H N N 343 LEU HD21 H N N 344 LEU HD22 H N N 345 LEU HD23 H N N 346 LEU HXT H N N 347 LYS N N N N 348 LYS CA C N S 349 LYS C C N N 350 LYS O O N N 351 LYS CB C N N 352 LYS CG C N N 353 LYS CD C N N 354 LYS CE C N N 355 LYS NZ N N N 356 LYS OXT O N N 357 LYS H H N N 358 LYS H2 H N N 359 LYS HA H N N 360 LYS HB2 H N N 361 LYS HB3 H N N 362 LYS HG2 H N N 363 LYS HG3 H N N 364 LYS HD2 H N N 365 LYS HD3 H N N 366 LYS HE2 H N N 367 LYS HE3 H N N 368 LYS HZ1 H N N 369 LYS HZ2 H N N 370 LYS HZ3 H N N 371 LYS HXT H N N 372 MET N N N N 373 MET CA C N S 374 MET C C N N 375 MET O O N N 376 MET CB C N N 377 MET CG C N N 378 MET SD S N N 379 MET CE C N N 380 MET OXT O N N 381 MET H H N N 382 MET H2 H N N 383 MET HA H N N 384 MET HB2 H N N 385 MET HB3 H N N 386 MET HG2 H N N 387 MET HG3 H N N 388 MET HE1 H N N 389 MET HE2 H N N 390 MET HE3 H N N 391 MET HXT H N N 392 NRI P P N N 393 NRI O1P O N N 394 NRI O2P O N N 395 NRI O3P O N N 396 NRI "O5'" O N N 397 NRI "C2'" C N N 398 NRI "C5'" C N N 399 NRI "C4'" C N R 400 NRI "C3'" C N R 401 NRI "C6'" C N N 402 NRI "N1'" N N N 403 NRI "O3'" O N N 404 NRI HOP2 H N N 405 NRI HOP3 H N N 406 NRI "H2'" H N N 407 NRI "H2''" H N N 408 NRI "H5'" H N N 409 NRI "H5''" H N N 410 NRI "H4'" H N N 411 NRI "H3'" H N N 412 NRI "H6'" H N N 413 NRI "H6''" H N N 414 NRI "HN1'" H N N 415 NRI "HO3'" H N N 416 PHE N N N N 417 PHE CA C N S 418 PHE C C N N 419 PHE O O N N 420 PHE CB C N N 421 PHE CG C Y N 422 PHE CD1 C Y N 423 PHE CD2 C Y N 424 PHE CE1 C Y N 425 PHE CE2 C Y N 426 PHE CZ C Y N 427 PHE OXT O N N 428 PHE H H N N 429 PHE H2 H N N 430 PHE HA H N N 431 PHE HB2 H N N 432 PHE HB3 H N N 433 PHE HD1 H N N 434 PHE HD2 H N N 435 PHE HE1 H N N 436 PHE HE2 H N N 437 PHE HZ H N N 438 PHE HXT H N N 439 PO4 P P N N 440 PO4 O1 O N N 441 PO4 O2 O N N 442 PO4 O3 O N N 443 PO4 O4 O N N 444 PRO N N N N 445 PRO CA C N S 446 PRO C C N N 447 PRO O O N N 448 PRO CB C N N 449 PRO CG C N N 450 PRO CD C N N 451 PRO OXT O N N 452 PRO H H N N 453 PRO HA H N N 454 PRO HB2 H N N 455 PRO HB3 H N N 456 PRO HG2 H N N 457 PRO HG3 H N N 458 PRO HD2 H N N 459 PRO HD3 H N N 460 PRO HXT H N N 461 SER N N N N 462 SER CA C N S 463 SER C C N N 464 SER O O N N 465 SER CB C N N 466 SER OG O N N 467 SER OXT O N N 468 SER H H N N 469 SER H2 H N N 470 SER HA H N N 471 SER HB2 H N N 472 SER HB3 H N N 473 SER HG H N N 474 SER HXT H N N 475 THR N N N N 476 THR CA C N S 477 THR C C N N 478 THR O O N N 479 THR CB C N R 480 THR OG1 O N N 481 THR CG2 C N N 482 THR OXT O N N 483 THR H H N N 484 THR H2 H N N 485 THR HA H N N 486 THR HB H N N 487 THR HG1 H N N 488 THR HG21 H N N 489 THR HG22 H N N 490 THR HG23 H N N 491 THR HXT H N N 492 TRP N N N N 493 TRP CA C N S 494 TRP C C N N 495 TRP O O N N 496 TRP CB C N N 497 TRP CG C Y N 498 TRP CD1 C Y N 499 TRP CD2 C Y N 500 TRP NE1 N Y N 501 TRP CE2 C Y N 502 TRP CE3 C Y N 503 TRP CZ2 C Y N 504 TRP CZ3 C Y N 505 TRP CH2 C Y N 506 TRP OXT O N N 507 TRP H H N N 508 TRP H2 H N N 509 TRP HA H N N 510 TRP HB2 H N N 511 TRP HB3 H N N 512 TRP HD1 H N N 513 TRP HE1 H N N 514 TRP HE3 H N N 515 TRP HZ2 H N N 516 TRP HZ3 H N N 517 TRP HH2 H N N 518 TRP HXT H N N 519 TYR N N N N 520 TYR CA C N S 521 TYR C C N N 522 TYR O O N N 523 TYR CB C N N 524 TYR CG C Y N 525 TYR CD1 C Y N 526 TYR CD2 C Y N 527 TYR CE1 C Y N 528 TYR CE2 C Y N 529 TYR CZ C Y N 530 TYR OH O N N 531 TYR OXT O N N 532 TYR H H N N 533 TYR H2 H N N 534 TYR HA H N N 535 TYR HB2 H N N 536 TYR HB3 H N N 537 TYR HD1 H N N 538 TYR HD2 H N N 539 TYR HE1 H N N 540 TYR HE2 H N N 541 TYR HH H N N 542 TYR HXT H N N 543 URA N1 N N N 544 URA C2 C N N 545 URA O2 O N N 546 URA N3 N N N 547 URA C4 C N N 548 URA O4 O N N 549 URA C5 C N N 550 URA C6 C N N 551 URA HN1 H N N 552 URA HN3 H N N 553 URA H5 H N N 554 URA H6 H N N 555 VAL N N N N 556 VAL CA C N S 557 VAL C C N N 558 VAL O O N N 559 VAL CB C N N 560 VAL CG1 C N N 561 VAL CG2 C N N 562 VAL OXT O N N 563 VAL H H N N 564 VAL H2 H N N 565 VAL HA H N N 566 VAL HB H N N 567 VAL HG11 H N N 568 VAL HG12 H N N 569 VAL HG13 H N N 570 VAL HG21 H N N 571 VAL HG22 H N N 572 VAL HG23 H N N 573 VAL HXT H N N 574 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 HOH O H1 sing N N 299 HOH O H2 sing N N 300 ILE N CA sing N N 301 ILE N H sing N N 302 ILE N H2 sing N N 303 ILE CA C sing N N 304 ILE CA CB sing N N 305 ILE CA HA sing N N 306 ILE C O doub N N 307 ILE C OXT sing N N 308 ILE CB CG1 sing N N 309 ILE CB CG2 sing N N 310 ILE CB HB sing N N 311 ILE CG1 CD1 sing N N 312 ILE CG1 HG12 sing N N 313 ILE CG1 HG13 sing N N 314 ILE CG2 HG21 sing N N 315 ILE CG2 HG22 sing N N 316 ILE CG2 HG23 sing N N 317 ILE CD1 HD11 sing N N 318 ILE CD1 HD12 sing N N 319 ILE CD1 HD13 sing N N 320 ILE OXT HXT sing N N 321 LEU N CA sing N N 322 LEU N H sing N N 323 LEU N H2 sing N N 324 LEU CA C sing N N 325 LEU CA CB sing N N 326 LEU CA HA sing N N 327 LEU C O doub N N 328 LEU C OXT sing N N 329 LEU CB CG sing N N 330 LEU CB HB2 sing N N 331 LEU CB HB3 sing N N 332 LEU CG CD1 sing N N 333 LEU CG CD2 sing N N 334 LEU CG HG sing N N 335 LEU CD1 HD11 sing N N 336 LEU CD1 HD12 sing N N 337 LEU CD1 HD13 sing N N 338 LEU CD2 HD21 sing N N 339 LEU CD2 HD22 sing N N 340 LEU CD2 HD23 sing N N 341 LEU OXT HXT sing N N 342 LYS N CA sing N N 343 LYS N H sing N N 344 LYS N H2 sing N N 345 LYS CA C sing N N 346 LYS CA CB sing N N 347 LYS CA HA sing N N 348 LYS C O doub N N 349 LYS C OXT sing N N 350 LYS CB CG sing N N 351 LYS CB HB2 sing N N 352 LYS CB HB3 sing N N 353 LYS CG CD sing N N 354 LYS CG HG2 sing N N 355 LYS CG HG3 sing N N 356 LYS CD CE sing N N 357 LYS CD HD2 sing N N 358 LYS CD HD3 sing N N 359 LYS CE NZ sing N N 360 LYS CE HE2 sing N N 361 LYS CE HE3 sing N N 362 LYS NZ HZ1 sing N N 363 LYS NZ HZ2 sing N N 364 LYS NZ HZ3 sing N N 365 LYS OXT HXT sing N N 366 MET N CA sing N N 367 MET N H sing N N 368 MET N H2 sing N N 369 MET CA C sing N N 370 MET CA CB sing N N 371 MET CA HA sing N N 372 MET C O doub N N 373 MET C OXT sing N N 374 MET CB CG sing N N 375 MET CB HB2 sing N N 376 MET CB HB3 sing N N 377 MET CG SD sing N N 378 MET CG HG2 sing N N 379 MET CG HG3 sing N N 380 MET SD CE sing N N 381 MET CE HE1 sing N N 382 MET CE HE2 sing N N 383 MET CE HE3 sing N N 384 MET OXT HXT sing N N 385 NRI P O1P doub N N 386 NRI P O2P sing N N 387 NRI P O3P sing N N 388 NRI P "O5'" sing N N 389 NRI O2P HOP2 sing N N 390 NRI O3P HOP3 sing N N 391 NRI "O5'" "C5'" sing N N 392 NRI "C2'" "C3'" sing N N 393 NRI "C2'" "N1'" sing N N 394 NRI "C2'" "H2'" sing N N 395 NRI "C2'" "H2''" sing N N 396 NRI "C5'" "C4'" sing N N 397 NRI "C5'" "H5'" sing N N 398 NRI "C5'" "H5''" sing N N 399 NRI "C4'" "C3'" sing N N 400 NRI "C4'" "C6'" sing N N 401 NRI "C4'" "H4'" sing N N 402 NRI "C3'" "O3'" sing N N 403 NRI "C3'" "H3'" sing N N 404 NRI "C6'" "N1'" sing N N 405 NRI "C6'" "H6'" sing N N 406 NRI "C6'" "H6''" sing N N 407 NRI "N1'" "HN1'" sing N N 408 NRI "O3'" "HO3'" sing N N 409 PHE N CA sing N N 410 PHE N H sing N N 411 PHE N H2 sing N N 412 PHE CA C sing N N 413 PHE CA CB sing N N 414 PHE CA HA sing N N 415 PHE C O doub N N 416 PHE C OXT sing N N 417 PHE CB CG sing N N 418 PHE CB HB2 sing N N 419 PHE CB HB3 sing N N 420 PHE CG CD1 doub Y N 421 PHE CG CD2 sing Y N 422 PHE CD1 CE1 sing Y N 423 PHE CD1 HD1 sing N N 424 PHE CD2 CE2 doub Y N 425 PHE CD2 HD2 sing N N 426 PHE CE1 CZ doub Y N 427 PHE CE1 HE1 sing N N 428 PHE CE2 CZ sing Y N 429 PHE CE2 HE2 sing N N 430 PHE CZ HZ sing N N 431 PHE OXT HXT sing N N 432 PO4 P O1 doub N N 433 PO4 P O2 sing N N 434 PO4 P O3 sing N N 435 PO4 P O4 sing N N 436 PRO N CA sing N N 437 PRO N CD sing N N 438 PRO N H sing N N 439 PRO CA C sing N N 440 PRO CA CB sing N N 441 PRO CA HA sing N N 442 PRO C O doub N N 443 PRO C OXT sing N N 444 PRO CB CG sing N N 445 PRO CB HB2 sing N N 446 PRO CB HB3 sing N N 447 PRO CG CD sing N N 448 PRO CG HG2 sing N N 449 PRO CG HG3 sing N N 450 PRO CD HD2 sing N N 451 PRO CD HD3 sing N N 452 PRO OXT HXT sing N N 453 SER N CA sing N N 454 SER N H sing N N 455 SER N H2 sing N N 456 SER CA C sing N N 457 SER CA CB sing N N 458 SER CA HA sing N N 459 SER C O doub N N 460 SER C OXT sing N N 461 SER CB OG sing N N 462 SER CB HB2 sing N N 463 SER CB HB3 sing N N 464 SER OG HG sing N N 465 SER OXT HXT sing N N 466 THR N CA sing N N 467 THR N H sing N N 468 THR N H2 sing N N 469 THR CA C sing N N 470 THR CA CB sing N N 471 THR CA HA sing N N 472 THR C O doub N N 473 THR C OXT sing N N 474 THR CB OG1 sing N N 475 THR CB CG2 sing N N 476 THR CB HB sing N N 477 THR OG1 HG1 sing N N 478 THR CG2 HG21 sing N N 479 THR CG2 HG22 sing N N 480 THR CG2 HG23 sing N N 481 THR OXT HXT sing N N 482 TRP N CA sing N N 483 TRP N H sing N N 484 TRP N H2 sing N N 485 TRP CA C sing N N 486 TRP CA CB sing N N 487 TRP CA HA sing N N 488 TRP C O doub N N 489 TRP C OXT sing N N 490 TRP CB CG sing N N 491 TRP CB HB2 sing N N 492 TRP CB HB3 sing N N 493 TRP CG CD1 doub Y N 494 TRP CG CD2 sing Y N 495 TRP CD1 NE1 sing Y N 496 TRP CD1 HD1 sing N N 497 TRP CD2 CE2 doub Y N 498 TRP CD2 CE3 sing Y N 499 TRP NE1 CE2 sing Y N 500 TRP NE1 HE1 sing N N 501 TRP CE2 CZ2 sing Y N 502 TRP CE3 CZ3 doub Y N 503 TRP CE3 HE3 sing N N 504 TRP CZ2 CH2 doub Y N 505 TRP CZ2 HZ2 sing N N 506 TRP CZ3 CH2 sing Y N 507 TRP CZ3 HZ3 sing N N 508 TRP CH2 HH2 sing N N 509 TRP OXT HXT sing N N 510 TYR N CA sing N N 511 TYR N H sing N N 512 TYR N H2 sing N N 513 TYR CA C sing N N 514 TYR CA CB sing N N 515 TYR CA HA sing N N 516 TYR C O doub N N 517 TYR C OXT sing N N 518 TYR CB CG sing N N 519 TYR CB HB2 sing N N 520 TYR CB HB3 sing N N 521 TYR CG CD1 doub Y N 522 TYR CG CD2 sing Y N 523 TYR CD1 CE1 sing Y N 524 TYR CD1 HD1 sing N N 525 TYR CD2 CE2 doub Y N 526 TYR CD2 HD2 sing N N 527 TYR CE1 CZ doub Y N 528 TYR CE1 HE1 sing N N 529 TYR CE2 CZ sing Y N 530 TYR CE2 HE2 sing N N 531 TYR CZ OH sing N N 532 TYR OH HH sing N N 533 TYR OXT HXT sing N N 534 URA N1 C2 sing N N 535 URA N1 C6 sing N N 536 URA N1 HN1 sing N N 537 URA C2 O2 doub N N 538 URA C2 N3 sing N N 539 URA N3 C4 sing N N 540 URA N3 HN3 sing N N 541 URA C4 O4 doub N N 542 URA C4 C5 sing N N 543 URA C5 C6 doub N N 544 URA C5 H5 sing N N 545 URA C6 H6 sing N N 546 VAL N CA sing N N 547 VAL N H sing N N 548 VAL N H2 sing N N 549 VAL CA C sing N N 550 VAL CA CB sing N N 551 VAL CA HA sing N N 552 VAL C O doub N N 553 VAL C OXT sing N N 554 VAL CB CG1 sing N N 555 VAL CB CG2 sing N N 556 VAL CB HB sing N N 557 VAL CG1 HG11 sing N N 558 VAL CG1 HG12 sing N N 559 VAL CG1 HG13 sing N N 560 VAL CG2 HG21 sing N N 561 VAL CG2 HG22 sing N N 562 VAL CG2 HG23 sing N N 563 VAL OXT HXT sing N N 564 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Q3F 'double helix' 1Q3F 'b-form double helix' 1Q3F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 10 1_555 -0.239 -0.285 -0.218 -14.967 -5.142 8.076 1 B_DT2:DA30_C B 2 ? C 30 ? 20 1 1 A DG 2 1_555 B DC 9 1_555 -0.173 0.007 0.550 9.393 0.895 5.539 2 B_DG3:DC29_C B 3 ? C 29 ? 19 1 1 A DT 3 1_555 B DA 8 1_555 0.033 0.109 -0.294 27.843 -8.266 2.935 3 B_DT4:DA28_C B 4 ? C 28 ? 20 1 1 A DA 5 1_555 B DT 6 1_555 -0.148 -0.176 -0.103 -5.293 -6.190 1.418 4 B_DA6:DT26_C B 6 ? C 26 ? 20 1 1 A DT 6 1_555 B DA 5 1_555 -0.036 0.043 0.042 4.740 -15.061 4.384 5 B_DT7:DA25_C B 7 ? C 25 ? 20 1 1 A DC 7 1_555 B DG 4 1_555 0.258 0.019 -0.137 0.854 -15.429 3.150 6 B_DC8:DG24_C B 8 ? C 24 ? 19 1 1 A DT 8 1_555 B DA 3 1_555 0.137 -0.053 0.116 -10.916 -12.992 -0.036 7 B_DT9:DA23_C B 9 ? C 23 ? 20 1 1 A DT 9 1_555 B DA 2 1_555 -0.371 0.011 0.108 -14.082 -11.141 -0.667 8 B_DT10:DA22_C B 10 ? C 22 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 10 1_555 A DG 2 1_555 B DC 9 1_555 0.322 -0.845 2.635 -5.274 12.741 22.606 -4.328 -1.730 1.794 29.264 12.114 26.433 1 BB_DT2DG3:DC29DA30_CC B 2 ? C 30 ? B 3 ? C 29 ? 1 A DG 2 1_555 B DC 9 1_555 A DT 3 1_555 B DA 8 1_555 -0.898 -0.223 2.901 4.948 6.015 31.603 -1.303 2.348 2.648 10.840 -8.916 32.525 2 BB_DG3DT4:DA28DC29_CC B 3 ? C 29 ? B 4 ? C 28 ? 1 A DA 5 1_555 B DT 6 1_555 A DT 6 1_555 B DA 5 1_555 -0.151 -0.589 3.015 -0.304 2.521 30.449 -1.576 0.231 2.959 4.789 0.578 30.552 3 BB_DA6DT7:DA25DT26_CC B 6 ? C 26 ? B 7 ? C 25 ? 1 A DT 6 1_555 B DA 5 1_555 A DC 7 1_555 B DG 4 1_555 -0.046 -0.071 3.284 0.856 0.396 38.849 -0.155 0.174 3.281 0.595 -1.287 38.860 4 BB_DT7DC8:DG24DA25_CC B 7 ? C 25 ? B 8 ? C 24 ? 1 A DC 7 1_555 B DG 4 1_555 A DT 8 1_555 B DA 3 1_555 -0.025 -0.464 3.543 0.533 5.766 36.836 -1.546 0.115 3.433 9.055 -0.838 37.272 5 BB_DC8DT9:DA23DG24_CC B 8 ? C 24 ? B 9 ? C 23 ? 1 A DT 8 1_555 B DA 3 1_555 A DT 9 1_555 B DA 2 1_555 0.023 0.136 3.371 0.151 3.095 33.252 -0.293 -0.014 3.370 5.393 -0.263 33.392 6 BB_DT9DT10:DA22DA23_CC B 9 ? C 23 ? B 10 ? C 22 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 URACIL URA 5 'PHOSPHATE ION' PO4 6 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1AKX _pdbx_initial_refinement_model.details 'PDB entry 1AKX' #