HEADER CALCIUM-BINDING PROTEIN 30-JUL-03 1Q3M TITLE 1H NMR STRUCTURE BUNDLE OF BOVINE CA2+-OSTEOCALCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: OSTEOCALCIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GAMMA-CARBOXYGLUTAMIC ACID-CONTAINING PROTEIN, BONE GLA- COMPND 5 PROTEIN, BGP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: BONE POWDER KEYWDS BONE PROTEIN, CALCIUM BINDING PROTEIN, CALCIUM-BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 13 AUTHOR T.L.DOWD,J.F.ROSEN,L.LI,C.M.GUNDBERG REVDAT 3 02-MAR-22 1Q3M 1 REMARK SEQADV LINK REVDAT 2 24-FEB-09 1Q3M 1 VERSN REVDAT 1 16-SEP-03 1Q3M 0 JRNL AUTH T.L.DOWD,J.F.ROSEN,L.LI,C.M.GUNDBERG JRNL TITL THE THREE-DIMENSIONAL STRUCTURE OF BOVINE CALCIUM ION-BOUND JRNL TITL 2 OSTEOCALCIN USING 1H NMR SPECTROSCOPY JRNL REF BIOCHEMISTRY V. 42 7769 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 12820886 JRNL DOI 10.1021/BI034470S REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER, A.T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q3M COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019873. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 6.9 REMARK 210 IONIC STRENGTH : 38 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 20MM NACL, 6MM CA(CL)2, 0.25MM REMARK 210 DSS REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : COSY; 17 AND 60 MS MIXING TIME REMARK 210 TOCSYS; NOESY (150 MS) REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX600 REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : DYANA, TALOS, AQUA, PROCHECK REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS, REMARK 210 SIMULATED ANNEALING AND ENERGY REMARK 210 MINIMIZATION REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 2 REMARK 210 REMARK 210 REMARK: SINCE THE 15 N-TERMINAL RESIDUES ARE UNSTRUCTURED AND REMARK 210 NOT CONSTRAINED, ONLY THE STRUCTURED REGION OF THE MOLECULE REMARK 210 (RESIDUES 16-49) IS INCLUDED IN THE STRUCTURE BUNDLE. REMARK 210 ALL OF THE STRUCTURES WERE SOLVED IN THE PRESENCE OF 6 MM CACL2. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-13 REMARK 465 RES C SSSEQI REMARK 465 TYR A 1 REMARK 465 LEU A 2 REMARK 465 ASP A 3 REMARK 465 HIS A 4 REMARK 465 TRP A 5 REMARK 465 LEU A 6 REMARK 465 GLY A 7 REMARK 465 ALA A 8 REMARK 465 PRO A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 TYR A 12 REMARK 465 PRO A 13 REMARK 465 ASP A 14 REMARK 465 PRO A 15 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 18 95.73 -54.00 REMARK 500 1 ILE A 36 -55.34 -146.45 REMARK 500 1 PHE A 38 -73.00 -120.00 REMARK 500 1 GLN A 39 -31.47 -179.60 REMARK 500 1 TYR A 46 -72.23 -138.12 REMARK 500 2 CGU A 17 116.83 67.59 REMARK 500 2 PRO A 18 90.90 -59.67 REMARK 500 2 GLU A 40 40.32 -149.24 REMARK 500 2 TYR A 46 -74.22 -139.80 REMARK 500 2 PRO A 48 104.50 -58.28 REMARK 500 3 CGU A 17 149.05 72.35 REMARK 500 3 LYS A 19 44.88 -155.08 REMARK 500 3 ARG A 20 36.07 -90.91 REMARK 500 3 ILE A 36 -54.02 -141.08 REMARK 500 3 TYR A 46 -63.87 -139.97 REMARK 500 3 PRO A 48 104.34 -47.43 REMARK 500 4 CGU A 17 96.92 67.61 REMARK 500 4 PRO A 18 96.27 -56.07 REMARK 500 4 LYS A 19 68.79 -111.66 REMARK 500 4 PRO A 27 103.78 -51.64 REMARK 500 4 ASP A 28 -53.48 -146.57 REMARK 500 4 ILE A 36 -55.20 -140.05 REMARK 500 4 TYR A 46 -62.63 -140.25 REMARK 500 5 CGU A 17 153.88 69.95 REMARK 500 5 PRO A 18 82.57 -68.58 REMARK 500 5 PRO A 27 87.58 -46.04 REMARK 500 5 ASP A 28 -58.75 -127.70 REMARK 500 5 ILE A 36 -50.79 -138.62 REMARK 500 5 TYR A 46 -71.60 -142.26 REMARK 500 6 CGU A 17 160.19 65.59 REMARK 500 6 ASP A 28 -66.26 -156.22 REMARK 500 6 ALA A 33 46.63 -84.18 REMARK 500 6 ASP A 34 -55.74 -131.64 REMARK 500 6 ILE A 36 -43.98 -134.38 REMARK 500 6 TYR A 46 -64.94 -141.41 REMARK 500 7 PRO A 18 91.78 -46.10 REMARK 500 7 TYR A 46 -67.54 -138.50 REMARK 500 8 CGU A 17 161.07 51.45 REMARK 500 8 ILE A 36 -56.78 -146.78 REMARK 500 8 PHE A 38 -89.76 -109.81 REMARK 500 8 GLN A 39 43.17 -172.23 REMARK 500 8 TYR A 46 -63.64 -139.58 REMARK 500 9 CGU A 17 112.95 72.02 REMARK 500 9 PRO A 18 90.62 -68.87 REMARK 500 9 LYS A 19 30.20 -145.48 REMARK 500 9 GLU A 31 49.38 -94.52 REMARK 500 9 ILE A 36 -55.17 -144.25 REMARK 500 9 PHE A 38 -84.39 -116.16 REMARK 500 9 GLN A 39 -33.94 170.59 REMARK 500 9 TYR A 46 -72.67 -138.68 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Q3M A 1 49 UNP P02820 OSTC_BOVIN 52 100 SEQADV 1Q3M CGU A 17 UNP P02820 GLU 68 MODIFIED RESIDUE SEQADV 1Q3M CGU A 21 UNP P02820 GLU 72 MODIFIED RESIDUE SEQADV 1Q3M CGU A 24 UNP P02820 GLU 75 MODIFIED RESIDUE SEQRES 1 A 49 TYR LEU ASP HIS TRP LEU GLY ALA PRO ALA PRO TYR PRO SEQRES 2 A 49 ASP PRO LEU CGU PRO LYS ARG CGU VAL CYS CGU LEU ASN SEQRES 3 A 49 PRO ASP CYS ASP GLU LEU ALA ASP HIS ILE GLY PHE GLN SEQRES 4 A 49 GLU ALA TYR ARG ARG PHE TYR GLY PRO VAL MODRES 1Q3M CGU A 17 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Q3M CGU A 21 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1Q3M CGU A 24 GLU GAMMA-CARBOXY-GLUTAMIC ACID HET CGU A 17 17 HET CGU A 21 17 HET CGU A 24 17 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID FORMUL 1 CGU 3(C6 H9 N O6) HELIX 1 1 ASN A 26 GLU A 31 1 6 HELIX 2 2 GLU A 31 ILE A 36 1 6 HELIX 3 3 GLN A 39 PHE A 45 1 7 SSBOND 1 CYS A 23 CYS A 29 1555 1555 2.03 LINK C LEU A 16 N CGU A 17 1555 1555 1.33 LINK C CGU A 17 N PRO A 18 1555 1555 1.35 LINK C ARG A 20 N CGU A 21 1555 1555 1.34 LINK C CGU A 21 N VAL A 22 1555 1555 1.34 LINK C CYS A 23 N CGU A 24 1555 1555 1.34 LINK C CGU A 24 N LEU A 25 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1