HEADER OXIDOREDUCTASE 01-AUG-03 1Q45 TITLE 12-0XO-PHYTODIENOATE REDUCTASE ISOFORM 3 COMPND MOL_ID: 1; COMPND 2 MOLECULE: 12-OXOPHYTODIENOATE-10,11-REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 12-0XO-PHYTODIENOATE REDUCTASE ISOFORM 3; 12- COMPND 5 OXOPHYTODIENOATE REDUCTASE; OPR3; DDE1; COMPND 6 EC: 1.3.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: THALE CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: AT2G06050; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PVP13 KEYWDS FLAVOPROTEIN, FLAVOENZYME, OXIDOREDUCTASE; XENOBIOTIC REDUCTASE; OLD KEYWDS 2 YELLOW ENZYME; SECONDARY MESSENGER, STRUCTURAL GENOMICS, PSI, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, CENTER FOR EUKARYOTIC STRUCTURAL KEYWDS 4 GENOMICS, CESG, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.N.PHILLIPS JR.,K.A.JOHNSON,C.A.BINGMAN,D.W.SMITH,CENTER FOR AUTHOR 2 EUKARYOTIC STRUCTURAL GENOMICS (CESG) REVDAT 6 14-FEB-24 1Q45 1 REMARK REVDAT 5 11-OCT-17 1Q45 1 REMARK REVDAT 4 24-FEB-09 1Q45 1 VERSN REVDAT 3 12-FEB-08 1Q45 1 REMARK REVDAT 2 01-FEB-05 1Q45 1 AUTHOR JRNL KEYWDS REMARK REVDAT 1 25-NOV-03 1Q45 0 JRNL AUTH T.E.MALONE,S.E.MADSON,R.L.WROBEL,W.B.JEON,N.S.ROSENBERG, JRNL AUTH 2 K.A.JOHNSON,C.A.BINGMAN,D.W.SMITH,G.N.PHILLIPS JR., JRNL AUTH 3 J.L.MARKLEY,B.G.FOX JRNL TITL X-RAY STRUCTURE OF ARABIDOPSIS AT2G06050, JRNL TITL 2 12-OXOPHYTODIENOATE REDUCTASE ISOFORM 3 JRNL REF PROTEINS V. 58 243 2005 JRNL REFN ISSN 0887-3585 JRNL PMID 15468319 JRNL DOI 10.1002/PROT.20162 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 48056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2572 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1541 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.00 REMARK 3 BIN R VALUE (WORKING SET) : 0.2970 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.3530 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5630 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.128 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.880 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.947 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5832 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 5201 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7913 ; 1.636 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12087 ; 0.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 728 ; 6.773 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 847 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6564 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1203 ; 0.011 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1589 ; 0.211 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 7337 ; 0.259 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 3688 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 461 ; 0.168 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.158 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 92 ; 0.243 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.211 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3622 ; 0.920 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5798 ; 1.615 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2210 ; 2.443 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2115 ; 3.836 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Q45 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019892. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JUN-03 REMARK 200 TEMPERATURE (KELVIN) : 90.0 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790 REMARK 200 MONOCHROMATOR : DIAMOND (111) DOUBLE-CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : BENT CYLINDRICAL SI-MIRROR (RH REMARK 200 COATING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50628 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.5 REMARK 200 DATA REDUNDANCY : 6.090 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : 0.13300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 5.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 43.6 REMARK 200 DATA REDUNDANCY IN SHELL : 0.39 REMARK 200 R MERGE FOR SHELL (I) : 0.68700 REMARK 200 R SYM FOR SHELL (I) : 0.68700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GLYCINE, MEPEG 5000, TRIETHANOLAMINE, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 39.05650 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.91200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.53400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.91200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 39.05650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.53400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 ASN A 7 REMARK 465 TYR A 285 REMARK 465 HIS A 286 REMARK 465 ALA A 287 REMARK 465 TYR A 288 REMARK 465 GLY A 289 REMARK 465 GLN A 290 REMARK 465 THR A 291 REMARK 465 GLU A 292 REMARK 465 SER A 293 REMARK 465 GLY A 294 REMARK 465 ARG A 295 REMARK 465 GLN A 296 REMARK 465 GLY A 297 REMARK 465 SER A 298 REMARK 465 ASP A 299 REMARK 465 PHE A 388 REMARK 465 SER A 389 REMARK 465 ARG A 390 REMARK 465 LEU A 391 REMARK 465 MET B 1 REMARK 465 THR B 2 REMARK 465 ALA B 3 REMARK 465 ALA B 4 REMARK 465 GLN B 5 REMARK 465 GLY B 6 REMARK 465 ASN B 7 REMARK 465 SER B 8 REMARK 465 GLY B 289 REMARK 465 GLN B 290 REMARK 465 THR B 291 REMARK 465 GLU B 292 REMARK 465 SER B 293 REMARK 465 GLY B 294 REMARK 465 ARG B 295 REMARK 465 GLN B 296 REMARK 465 GLY B 297 REMARK 465 SER B 298 REMARK 465 ALA B 386 REMARK 465 PRO B 387 REMARK 465 PHE B 388 REMARK 465 SER B 389 REMARK 465 ARG B 390 REMARK 465 LEU B 391 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 300 CB CG CD OE1 OE2 REMARK 470 GLU A 302 CB CG CD OE1 OE2 REMARK 470 ASN B 9 CG OD1 ND2 REMARK 470 ARG B 367 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 920 O HOH A 928 2.00 REMARK 500 O LEU A 156 NH2 ARG A 204 2.13 REMARK 500 O HOH B 541 O HOH B 932 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 311 CG MET A 311 SD 0.171 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 203 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ASP A 206 CB - CG - OD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 ASP A 247 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP A 252 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 ASP A 351 CB - CG - OD2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP A 381 CB - CG - OD2 ANGL. DEV. = 7.8 DEGREES REMARK 500 ASP B 144 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 LEU B 170 CA - CB - CG ANGL. DEV. = 15.2 DEGREES REMARK 500 ASP B 203 CB - CG - OD2 ANGL. DEV. = 8.6 DEGREES REMARK 500 ASP B 359 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 18 78.13 -101.21 REMARK 500 GLU A 63 149.61 -39.72 REMARK 500 SER A 240 78.22 -151.19 REMARK 500 ASN A 271 -20.92 -154.85 REMARK 500 ASP A 351 42.06 -96.13 REMARK 500 LEU B 38 120.76 -36.42 REMARK 500 GLU B 63 144.59 -38.64 REMARK 500 SER B 240 77.86 -162.72 REMARK 500 HIS B 245 131.30 -35.43 REMARK 500 ASP B 252 80.79 -151.16 REMARK 500 ASP B 351 46.97 -97.66 REMARK 500 VAL B 376 -50.08 -123.53 REMARK 500 TYR B 379 -61.59 -125.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN A 7401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMN B 9401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q44 RELATED DB: PDB REMARK 900 RELATED ID: GO.8210 RELATED DB: TARGETDB DBREF 1Q45 A 1 391 UNP Q9FUP0 OPR3_ARATH 1 391 DBREF 1Q45 B 1 391 UNP Q9FUP0 OPR3_ARATH 1 391 SEQRES 1 A 391 MET THR ALA ALA GLN GLY ASN SER ASN GLU THR LEU PHE SEQRES 2 A 391 SER SER TYR LYS MET GLY ARG PHE ASP LEU SER HIS ARG SEQRES 3 A 391 VAL VAL LEU ALA PRO MET THR ARG CYS ARG ALA LEU ASN SEQRES 4 A 391 GLY VAL PRO ASN ALA ALA LEU ALA GLU TYR TYR ALA GLN SEQRES 5 A 391 ARG THR THR PRO GLY GLY PHE LEU ILE SER GLU GLY THR SEQRES 6 A 391 MET VAL SER PRO GLY SER ALA GLY PHE PRO HIS VAL PRO SEQRES 7 A 391 GLY ILE TYR SER ASP GLU GLN VAL GLU ALA TRP LYS GLN SEQRES 8 A 391 VAL VAL GLU ALA VAL HIS ALA LYS GLY GLY PHE ILE PHE SEQRES 9 A 391 CYS GLN LEU TRP HIS VAL GLY ARG ALA SER HIS ALA VAL SEQRES 10 A 391 TYR GLN PRO ASN GLY GLY SER PRO ILE SER SER THR ASN SEQRES 11 A 391 LYS PRO ILE SER GLU ASN ARG TRP ARG VAL LEU LEU PRO SEQRES 12 A 391 ASP GLY SER HIS VAL LYS TYR PRO LYS PRO ARG ALA LEU SEQRES 13 A 391 GLU ALA SER GLU ILE PRO ARG VAL VAL GLU ASP TYR CYS SEQRES 14 A 391 LEU SER ALA LEU ASN ALA ILE ARG ALA GLY PHE ASP GLY SEQRES 15 A 391 ILE GLU ILE HIS GLY ALA HIS GLY TYR LEU ILE ASP GLN SEQRES 16 A 391 PHE LEU LYS ASP GLY ILE ASN ASP ARG THR ASP GLN TYR SEQRES 17 A 391 GLY GLY SER ILE ALA ASN ARG CYS ARG PHE LEU LYS GLN SEQRES 18 A 391 VAL VAL GLU GLY VAL VAL SER ALA ILE GLY ALA SER LYS SEQRES 19 A 391 VAL GLY VAL ARG VAL SER PRO ALA ILE ASP HIS LEU ASP SEQRES 20 A 391 ALA THR ASP SER ASP PRO LEU SER LEU GLY LEU ALA VAL SEQRES 21 A 391 VAL GLY MET LEU ASN LYS LEU GLN GLY VAL ASN GLY SER SEQRES 22 A 391 LYS LEU ALA TYR LEU HIS VAL THR GLN PRO ARG TYR HIS SEQRES 23 A 391 ALA TYR GLY GLN THR GLU SER GLY ARG GLN GLY SER ASP SEQRES 24 A 391 GLU GLU GLU ALA LYS LEU MET LYS SER LEU ARG MET ALA SEQRES 25 A 391 TYR ASN GLY THR PHE MET SER SER GLY GLY PHE ASN LYS SEQRES 26 A 391 GLU LEU GLY MET GLN ALA VAL GLN GLN GLY ASP ALA ASP SEQRES 27 A 391 LEU VAL SER TYR GLY ARG LEU PHE ILE ALA ASN PRO ASP SEQRES 28 A 391 LEU VAL SER ARG PHE LYS ILE ASP GLY GLU LEU ASN LYS SEQRES 29 A 391 TYR ASN ARG LYS THR PHE TYR THR GLN ASP PRO VAL VAL SEQRES 30 A 391 GLY TYR THR ASP TYR PRO PHE LEU ALA PRO PHE SER ARG SEQRES 31 A 391 LEU SEQRES 1 B 391 MET THR ALA ALA GLN GLY ASN SER ASN GLU THR LEU PHE SEQRES 2 B 391 SER SER TYR LYS MET GLY ARG PHE ASP LEU SER HIS ARG SEQRES 3 B 391 VAL VAL LEU ALA PRO MET THR ARG CYS ARG ALA LEU ASN SEQRES 4 B 391 GLY VAL PRO ASN ALA ALA LEU ALA GLU TYR TYR ALA GLN SEQRES 5 B 391 ARG THR THR PRO GLY GLY PHE LEU ILE SER GLU GLY THR SEQRES 6 B 391 MET VAL SER PRO GLY SER ALA GLY PHE PRO HIS VAL PRO SEQRES 7 B 391 GLY ILE TYR SER ASP GLU GLN VAL GLU ALA TRP LYS GLN SEQRES 8 B 391 VAL VAL GLU ALA VAL HIS ALA LYS GLY GLY PHE ILE PHE SEQRES 9 B 391 CYS GLN LEU TRP HIS VAL GLY ARG ALA SER HIS ALA VAL SEQRES 10 B 391 TYR GLN PRO ASN GLY GLY SER PRO ILE SER SER THR ASN SEQRES 11 B 391 LYS PRO ILE SER GLU ASN ARG TRP ARG VAL LEU LEU PRO SEQRES 12 B 391 ASP GLY SER HIS VAL LYS TYR PRO LYS PRO ARG ALA LEU SEQRES 13 B 391 GLU ALA SER GLU ILE PRO ARG VAL VAL GLU ASP TYR CYS SEQRES 14 B 391 LEU SER ALA LEU ASN ALA ILE ARG ALA GLY PHE ASP GLY SEQRES 15 B 391 ILE GLU ILE HIS GLY ALA HIS GLY TYR LEU ILE ASP GLN SEQRES 16 B 391 PHE LEU LYS ASP GLY ILE ASN ASP ARG THR ASP GLN TYR SEQRES 17 B 391 GLY GLY SER ILE ALA ASN ARG CYS ARG PHE LEU LYS GLN SEQRES 18 B 391 VAL VAL GLU GLY VAL VAL SER ALA ILE GLY ALA SER LYS SEQRES 19 B 391 VAL GLY VAL ARG VAL SER PRO ALA ILE ASP HIS LEU ASP SEQRES 20 B 391 ALA THR ASP SER ASP PRO LEU SER LEU GLY LEU ALA VAL SEQRES 21 B 391 VAL GLY MET LEU ASN LYS LEU GLN GLY VAL ASN GLY SER SEQRES 22 B 391 LYS LEU ALA TYR LEU HIS VAL THR GLN PRO ARG TYR HIS SEQRES 23 B 391 ALA TYR GLY GLN THR GLU SER GLY ARG GLN GLY SER ASP SEQRES 24 B 391 GLU GLU GLU ALA LYS LEU MET LYS SER LEU ARG MET ALA SEQRES 25 B 391 TYR ASN GLY THR PHE MET SER SER GLY GLY PHE ASN LYS SEQRES 26 B 391 GLU LEU GLY MET GLN ALA VAL GLN GLN GLY ASP ALA ASP SEQRES 27 B 391 LEU VAL SER TYR GLY ARG LEU PHE ILE ALA ASN PRO ASP SEQRES 28 B 391 LEU VAL SER ARG PHE LYS ILE ASP GLY GLU LEU ASN LYS SEQRES 29 B 391 TYR ASN ARG LYS THR PHE TYR THR GLN ASP PRO VAL VAL SEQRES 30 B 391 GLY TYR THR ASP TYR PRO PHE LEU ALA PRO PHE SER ARG SEQRES 31 B 391 LEU HET FMN A7401 31 HET FMN B9401 31 HETNAM FMN FLAVIN MONONUCLEOTIDE HETSYN FMN RIBOFLAVIN MONOPHOSPHATE FORMUL 3 FMN 2(C17 H21 N4 O9 P) FORMUL 5 HOH *410(H2 O) HELIX 1 1 ALA A 37 VAL A 41 5 5 HELIX 2 2 ASN A 43 ARG A 53 1 11 HELIX 3 3 SER A 82 LYS A 99 1 18 HELIX 4 4 HIS A 115 GLY A 123 5 9 HELIX 5 5 GLU A 157 SER A 159 5 3 HELIX 6 6 GLU A 160 GLY A 179 1 20 HELIX 7 7 TYR A 191 LYS A 198 1 8 HELIX 8 8 SER A 211 GLY A 231 1 21 HELIX 9 9 ASP A 244 ALA A 248 5 5 HELIX 10 10 ASP A 252 VAL A 270 1 19 HELIX 11 11 GLU A 300 TYR A 313 1 14 HELIX 12 12 ASN A 324 GLN A 334 1 11 HELIX 13 13 GLY A 343 ASN A 349 1 7 HELIX 14 14 ASP A 351 ILE A 358 1 8 HELIX 15 15 ASN A 366 PHE A 370 5 5 HELIX 16 16 ALA B 37 VAL B 41 5 5 HELIX 17 17 ASN B 43 ARG B 53 1 11 HELIX 18 18 SER B 82 LYS B 99 1 18 HELIX 19 19 HIS B 115 GLY B 123 5 9 HELIX 20 20 GLU B 157 SER B 159 5 3 HELIX 21 21 GLU B 160 ALA B 178 1 19 HELIX 22 22 TYR B 191 LYS B 198 1 8 HELIX 23 23 SER B 211 GLY B 231 1 21 HELIX 24 24 ASP B 244 ALA B 248 5 5 HELIX 25 25 ASP B 252 GLY B 272 1 21 HELIX 26 26 ASP B 299 TYR B 313 1 15 HELIX 27 27 ASN B 324 GLN B 334 1 11 HELIX 28 28 GLY B 343 ASN B 349 1 7 HELIX 29 29 ASP B 351 ILE B 358 1 8 HELIX 30 30 ASN B 366 PHE B 370 5 5 SHEET 1 A 2 TYR A 16 MET A 18 0 SHEET 2 A 2 PHE A 21 LEU A 23 -1 O LEU A 23 N TYR A 16 SHEET 1 B 9 VAL A 27 LEU A 29 0 SHEET 2 B 9 PHE A 59 MET A 66 1 O ILE A 61 N LEU A 29 SHEET 3 B 9 PHE A 102 TRP A 108 1 O TRP A 108 N THR A 65 SHEET 4 B 9 GLY A 182 GLY A 187 1 O GLU A 184 N LEU A 107 SHEET 5 B 9 VAL A 235 VAL A 239 1 O ARG A 238 N ILE A 185 SHEET 6 B 9 TYR A 277 THR A 281 1 O HIS A 279 N VAL A 237 SHEET 7 B 9 PHE A 317 SER A 320 1 O MET A 318 N LEU A 278 SHEET 8 B 9 LEU A 339 TYR A 342 1 O SER A 341 N SER A 319 SHEET 9 B 9 VAL A 27 LEU A 29 1 N VAL A 28 O TYR A 342 SHEET 1 C 2 ILE A 126 SER A 127 0 SHEET 2 C 2 ARG A 154 ALA A 155 1 O ARG A 154 N SER A 127 SHEET 1 D 2 VAL A 140 LEU A 141 0 SHEET 2 D 2 HIS A 147 VAL A 148 -1 O VAL A 148 N VAL A 140 SHEET 1 E 2 TYR B 16 MET B 18 0 SHEET 2 E 2 PHE B 21 LEU B 23 -1 O LEU B 23 N TYR B 16 SHEET 1 F 9 VAL B 27 LEU B 29 0 SHEET 2 F 9 PHE B 59 MET B 66 1 O ILE B 61 N LEU B 29 SHEET 3 F 9 PHE B 102 TRP B 108 1 O TRP B 108 N THR B 65 SHEET 4 F 9 GLY B 182 GLY B 187 1 O GLU B 184 N LEU B 107 SHEET 5 F 9 VAL B 235 VAL B 239 1 O ARG B 238 N ILE B 185 SHEET 6 F 9 TYR B 277 THR B 281 1 O HIS B 279 N VAL B 237 SHEET 7 F 9 PHE B 317 SER B 320 1 O MET B 318 N LEU B 278 SHEET 8 F 9 LEU B 339 TYR B 342 1 O LEU B 339 N SER B 319 SHEET 9 F 9 VAL B 27 LEU B 29 1 N VAL B 28 O VAL B 340 SHEET 1 G 2 ILE B 126 SER B 127 0 SHEET 2 G 2 ARG B 154 ALA B 155 1 O ARG B 154 N SER B 127 SHEET 1 H 2 VAL B 140 LEU B 141 0 SHEET 2 H 2 HIS B 147 VAL B 148 -1 O VAL B 148 N VAL B 140 SITE 1 AC1 19 ALA A 30 PRO A 31 MET A 32 THR A 33 SITE 2 AC1 19 GLY A 64 GLN A 106 HIS A 186 HIS A 189 SITE 3 AC1 19 ARG A 238 SER A 320 GLY A 321 GLY A 322 SITE 4 AC1 19 TYR A 342 GLY A 343 ARG A 344 TYR A 371 SITE 5 AC1 19 HOH A 570 HOH A 571 HOH A 607 SITE 1 AC2 21 ALA B 30 PRO B 31 MET B 32 THR B 33 SITE 2 AC2 21 GLY B 64 GLN B 106 HIS B 186 HIS B 189 SITE 3 AC2 21 ARG B 238 SER B 320 GLY B 321 GLY B 322 SITE 4 AC2 21 TYR B 342 GLY B 343 ARG B 344 PHE B 370 SITE 5 AC2 21 TYR B 371 HOH B 529 HOH B 532 HOH B 702 SITE 6 AC2 21 HOH B 791 CRYST1 78.113 85.068 121.824 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012802 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011755 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008209 0.00000