data_1Q4X # _entry.id 1Q4X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q4X pdb_00001q4x 10.2210/pdb1q4x/pdb RCSB RCSB019920 ? ? WWPDB D_1000019920 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-02-03 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_site 5 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q4X _pdbx_database_status.recvd_initial_deposition_date 2003-08-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Borngraeber, S.' 1 'Budny, M.J.' 2 'Chiellini, G.' 3 'Cunha-Lima, S.T.' 4 'Togashi, M.' 5 'Webb, P.' 6 'Baxter, J.D.' 7 'Scanlan, T.S.' 8 'Fletterick, R.J.' 9 # _citation.id primary _citation.title 'Ligand selectivity by seeking hydrophobicity in thyroid hormone receptor.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 100 _citation.page_first 15358 _citation.page_last 15363 _citation.year 2003 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14673100 _citation.pdbx_database_id_DOI 10.1073/pnas.2136689100 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Borngraeber, S.' 1 ? primary 'Budny, M.J.' 2 ? primary 'Chiellini, G.' 3 ? primary 'Cunha-Lima, S.T.' 4 ? primary 'Togashi, M.' 5 ? primary 'Webb, P.' 6 ? primary 'Baxter, J.D.' 7 ? primary 'Scanlan, T.S.' 8 ? primary 'Fletterick, R.J.' 9 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Thyroid hormone receptor beta-1' 28582.080 1 ? ? 'Ligand Binding Domain' ? 2 non-polymer syn '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' 376.445 2 ? ? ? ? 3 water nat water 18.015 40 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED ; _entity_poly.pdbx_seq_one_letter_code_can ;GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' G24 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 HIS n 1 3 LYS n 1 4 PRO n 1 5 GLU n 1 6 PRO n 1 7 THR n 1 8 ASP n 1 9 GLU n 1 10 GLU n 1 11 TRP n 1 12 GLU n 1 13 LEU n 1 14 ILE n 1 15 LYS n 1 16 THR n 1 17 VAL n 1 18 THR n 1 19 GLU n 1 20 ALA n 1 21 HIS n 1 22 VAL n 1 23 ALA n 1 24 THR n 1 25 ASN n 1 26 ALA n 1 27 GLN n 1 28 GLY n 1 29 SER n 1 30 HIS n 1 31 TRP n 1 32 LYS n 1 33 GLN n 1 34 LYS n 1 35 ARG n 1 36 LYS n 1 37 PHE n 1 38 LEU n 1 39 PRO n 1 40 GLU n 1 41 ASP n 1 42 ILE n 1 43 GLY n 1 44 GLN n 1 45 ALA n 1 46 PRO n 1 47 ILE n 1 48 VAL n 1 49 ASN n 1 50 ALA n 1 51 PRO n 1 52 GLU n 1 53 GLY n 1 54 GLY n 1 55 LYS n 1 56 VAL n 1 57 ASP n 1 58 LEU n 1 59 GLU n 1 60 ALA n 1 61 PHE n 1 62 SER n 1 63 HIS n 1 64 PHE n 1 65 THR n 1 66 LYS n 1 67 ILE n 1 68 ILE n 1 69 THR n 1 70 PRO n 1 71 ALA n 1 72 ILE n 1 73 THR n 1 74 ARG n 1 75 VAL n 1 76 VAL n 1 77 ASP n 1 78 PHE n 1 79 ALA n 1 80 LYS n 1 81 LYS n 1 82 LEU n 1 83 PRO n 1 84 MET n 1 85 PHE n 1 86 CYS n 1 87 GLU n 1 88 LEU n 1 89 PRO n 1 90 CYS n 1 91 GLU n 1 92 ASP n 1 93 GLN n 1 94 ILE n 1 95 ILE n 1 96 LEU n 1 97 LEU n 1 98 LYS n 1 99 GLY n 1 100 CYS n 1 101 CYS n 1 102 MET n 1 103 GLU n 1 104 ILE n 1 105 MET n 1 106 SER n 1 107 LEU n 1 108 ARG n 1 109 ALA n 1 110 ALA n 1 111 VAL n 1 112 ARG n 1 113 TYR n 1 114 ASP n 1 115 PRO n 1 116 GLU n 1 117 SER n 1 118 GLU n 1 119 THR n 1 120 LEU n 1 121 THR n 1 122 LEU n 1 123 ASN n 1 124 GLY n 1 125 GLU n 1 126 MET n 1 127 ALA n 1 128 VAL n 1 129 THR n 1 130 ARG n 1 131 GLY n 1 132 GLN n 1 133 LEU n 1 134 LYS n 1 135 ASN n 1 136 GLY n 1 137 GLY n 1 138 LEU n 1 139 GLY n 1 140 VAL n 1 141 VAL n 1 142 SER n 1 143 ASP n 1 144 ALA n 1 145 ILE n 1 146 PHE n 1 147 ASP n 1 148 LEU n 1 149 GLY n 1 150 MET n 1 151 SER n 1 152 LEU n 1 153 SER n 1 154 SER n 1 155 PHE n 1 156 ASN n 1 157 LEU n 1 158 ASP n 1 159 ASP n 1 160 THR n 1 161 GLU n 1 162 VAL n 1 163 ALA n 1 164 LEU n 1 165 LEU n 1 166 GLN n 1 167 ALA n 1 168 VAL n 1 169 LEU n 1 170 LEU n 1 171 MET n 1 172 SER n 1 173 SER n 1 174 ASP n 1 175 ARG n 1 176 PRO n 1 177 GLY n 1 178 LEU n 1 179 ALA n 1 180 CYS n 1 181 VAL n 1 182 GLU n 1 183 ARG n 1 184 ILE n 1 185 GLU n 1 186 LYS n 1 187 TYR n 1 188 GLN n 1 189 ASP n 1 190 SER n 1 191 PHE n 1 192 LEU n 1 193 LEU n 1 194 ALA n 1 195 PHE n 1 196 GLU n 1 197 HIS n 1 198 TYR n 1 199 ILE n 1 200 ASN n 1 201 TYR n 1 202 ARG n 1 203 LYS n 1 204 HIS n 1 205 HIS n 1 206 VAL n 1 207 THR n 1 208 HIS n 1 209 PHE n 1 210 TRP n 1 211 PRO n 1 212 LYS n 1 213 LEU n 1 214 LEU n 1 215 MET n 1 216 LYS n 1 217 VAL n 1 218 THR n 1 219 ASP n 1 220 LEU n 1 221 ARG n 1 222 MET n 1 223 ILE n 1 224 GLY n 1 225 ALA n 1 226 CYS n 1 227 HIS n 1 228 ALA n 1 229 SER n 1 230 ARG n 1 231 PHE n 1 232 LEU n 1 233 HIS n 1 234 MET n 1 235 LYS n 1 236 VAL n 1 237 GLU n 1 238 CYS n 1 239 PRO n 1 240 THR n 1 241 GLU n 1 242 LEU n 1 243 PHE n 1 244 PRO n 1 245 PRO n 1 246 LEU n 1 247 PHE n 1 248 LEU n 1 249 GLU n 1 250 VAL n 1 251 PHE n 1 252 GLU n 1 253 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene 'THRB OR NR1A2 OR ERBA2 OR THR1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET28 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 G24 non-polymer . '[4-(3-BENZYL-4-HYDROXYBENZYL)-3,5-DIMETHYLPHENOXY]ACETIC ACID' GC-24 'C24 H24 O4' 376.445 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 209 209 GLY GLY A . n A 1 2 HIS 2 210 210 HIS HIS A . n A 1 3 LYS 3 211 211 LYS LYS A . n A 1 4 PRO 4 212 212 PRO PRO A . n A 1 5 GLU 5 213 213 GLU GLU A . n A 1 6 PRO 6 214 214 PRO PRO A . n A 1 7 THR 7 215 215 THR THR A . n A 1 8 ASP 8 216 216 ASP ASP A . n A 1 9 GLU 9 217 217 GLU GLU A . n A 1 10 GLU 10 218 218 GLU GLU A . n A 1 11 TRP 11 219 219 TRP TRP A . n A 1 12 GLU 12 220 220 GLU GLU A . n A 1 13 LEU 13 221 221 LEU LEU A . n A 1 14 ILE 14 222 222 ILE ILE A . n A 1 15 LYS 15 223 223 LYS LYS A . n A 1 16 THR 16 224 224 THR THR A . n A 1 17 VAL 17 225 225 VAL VAL A . n A 1 18 THR 18 226 226 THR THR A . n A 1 19 GLU 19 227 227 GLU GLU A . n A 1 20 ALA 20 228 228 ALA ALA A . n A 1 21 HIS 21 229 229 HIS HIS A . n A 1 22 VAL 22 230 230 VAL VAL A . n A 1 23 ALA 23 231 231 ALA ALA A . n A 1 24 THR 24 232 232 THR THR A . n A 1 25 ASN 25 233 233 ASN ASN A . n A 1 26 ALA 26 234 234 ALA ALA A . n A 1 27 GLN 27 235 235 GLN GLN A . n A 1 28 GLY 28 236 236 GLY GLY A . n A 1 29 SER 29 237 237 SER SER A . n A 1 30 HIS 30 238 238 HIS HIS A . n A 1 31 TRP 31 239 239 TRP TRP A . n A 1 32 LYS 32 240 240 LYS LYS A . n A 1 33 GLN 33 241 241 GLN GLN A . n A 1 34 LYS 34 242 242 LYS LYS A . n A 1 35 ARG 35 243 243 ARG ARG A . n A 1 36 LYS 36 244 244 LYS LYS A . n A 1 37 PHE 37 245 245 PHE PHE A . n A 1 38 LEU 38 246 246 LEU LEU A . n A 1 39 PRO 39 247 247 PRO PRO A . n A 1 40 GLU 40 248 ? ? ? A . n A 1 41 ASP 41 249 ? ? ? A . n A 1 42 ILE 42 250 ? ? ? A . n A 1 43 GLY 43 251 ? ? ? A . n A 1 44 GLN 44 252 ? ? ? A . n A 1 45 ALA 45 253 ? ? ? A . n A 1 46 PRO 46 254 ? ? ? A . n A 1 47 ILE 47 255 ? ? ? A . n A 1 48 VAL 48 256 ? ? ? A . n A 1 49 ASN 49 257 ? ? ? A . n A 1 50 ALA 50 258 ? ? ? A . n A 1 51 PRO 51 259 ? ? ? A . n A 1 52 GLU 52 260 ? ? ? A . n A 1 53 GLY 53 261 ? ? ? A . n A 1 54 GLY 54 262 262 GLY GLY A . n A 1 55 LYS 55 263 263 LYS LYS A . n A 1 56 VAL 56 264 264 VAL VAL A . n A 1 57 ASP 57 265 265 ASP ASP A . n A 1 58 LEU 58 266 266 LEU LEU A . n A 1 59 GLU 59 267 267 GLU GLU A . n A 1 60 ALA 60 268 268 ALA ALA A . n A 1 61 PHE 61 269 269 PHE PHE A . n A 1 62 SER 62 270 270 SER SER A . n A 1 63 HIS 63 271 271 HIS HIS A . n A 1 64 PHE 64 272 272 PHE PHE A . n A 1 65 THR 65 273 273 THR THR A . n A 1 66 LYS 66 274 274 LYS LYS A . n A 1 67 ILE 67 275 275 ILE ILE A . n A 1 68 ILE 68 276 276 ILE ILE A . n A 1 69 THR 69 277 277 THR THR A . n A 1 70 PRO 70 278 278 PRO PRO A . n A 1 71 ALA 71 279 279 ALA ALA A . n A 1 72 ILE 72 280 280 ILE ILE A . n A 1 73 THR 73 281 281 THR THR A . n A 1 74 ARG 74 282 282 ARG ARG A . n A 1 75 VAL 75 283 283 VAL VAL A . n A 1 76 VAL 76 284 284 VAL VAL A . n A 1 77 ASP 77 285 285 ASP ASP A . n A 1 78 PHE 78 286 286 PHE PHE A . n A 1 79 ALA 79 287 287 ALA ALA A . n A 1 80 LYS 80 288 288 LYS LYS A . n A 1 81 LYS 81 289 289 LYS LYS A . n A 1 82 LEU 82 290 290 LEU LEU A . n A 1 83 PRO 83 291 291 PRO PRO A . n A 1 84 MET 84 292 292 MET MET A . n A 1 85 PHE 85 293 293 PHE PHE A . n A 1 86 CYS 86 294 294 CYS CYS A . n A 1 87 GLU 87 295 295 GLU GLU A . n A 1 88 LEU 88 296 296 LEU LEU A . n A 1 89 PRO 89 297 297 PRO PRO A . n A 1 90 CYS 90 298 298 CYS CYS A . n A 1 91 GLU 91 299 299 GLU GLU A . n A 1 92 ASP 92 300 300 ASP ASP A . n A 1 93 GLN 93 301 301 GLN GLN A . n A 1 94 ILE 94 302 302 ILE ILE A . n A 1 95 ILE 95 303 303 ILE ILE A . n A 1 96 LEU 96 304 304 LEU LEU A . n A 1 97 LEU 97 305 305 LEU LEU A . n A 1 98 LYS 98 306 306 LYS LYS A . n A 1 99 GLY 99 307 307 GLY GLY A . n A 1 100 CYS 100 308 308 CYS CYS A . n A 1 101 CYS 101 309 309 CYS CYS A . n A 1 102 MET 102 310 310 MET MET A . n A 1 103 GLU 103 311 311 GLU GLU A . n A 1 104 ILE 104 312 312 ILE ILE A . n A 1 105 MET 105 313 313 MET MET A . n A 1 106 SER 106 314 314 SER SER A . n A 1 107 LEU 107 315 315 LEU LEU A . n A 1 108 ARG 108 316 316 ARG ARG A . n A 1 109 ALA 109 317 317 ALA ALA A . n A 1 110 ALA 110 318 318 ALA ALA A . n A 1 111 VAL 111 319 319 VAL VAL A . n A 1 112 ARG 112 320 320 ARG ARG A . n A 1 113 TYR 113 321 321 TYR TYR A . n A 1 114 ASP 114 322 322 ASP ASP A . n A 1 115 PRO 115 323 323 PRO PRO A . n A 1 116 GLU 116 324 324 GLU GLU A . n A 1 117 SER 117 325 325 SER SER A . n A 1 118 GLU 118 326 326 GLU GLU A . n A 1 119 THR 119 327 327 THR THR A . n A 1 120 LEU 120 328 328 LEU LEU A . n A 1 121 THR 121 329 329 THR THR A . n A 1 122 LEU 122 330 330 LEU LEU A . n A 1 123 ASN 123 331 331 ASN ASN A . n A 1 124 GLY 124 332 332 GLY GLY A . n A 1 125 GLU 125 333 333 GLU GLU A . n A 1 126 MET 126 334 334 MET MET A . n A 1 127 ALA 127 335 335 ALA ALA A . n A 1 128 VAL 128 336 336 VAL VAL A . n A 1 129 THR 129 337 337 THR THR A . n A 1 130 ARG 130 338 338 ARG ARG A . n A 1 131 GLY 131 339 339 GLY GLY A . n A 1 132 GLN 132 340 340 GLN GLN A . n A 1 133 LEU 133 341 341 LEU LEU A . n A 1 134 LYS 134 342 342 LYS LYS A . n A 1 135 ASN 135 343 343 ASN ASN A . n A 1 136 GLY 136 344 344 GLY GLY A . n A 1 137 GLY 137 345 345 GLY GLY A . n A 1 138 LEU 138 346 346 LEU LEU A . n A 1 139 GLY 139 347 347 GLY GLY A . n A 1 140 VAL 140 348 348 VAL VAL A . n A 1 141 VAL 141 349 349 VAL VAL A . n A 1 142 SER 142 350 350 SER SER A . n A 1 143 ASP 143 351 351 ASP ASP A . n A 1 144 ALA 144 352 352 ALA ALA A . n A 1 145 ILE 145 353 353 ILE ILE A . n A 1 146 PHE 146 354 354 PHE PHE A . n A 1 147 ASP 147 355 355 ASP ASP A . n A 1 148 LEU 148 356 356 LEU LEU A . n A 1 149 GLY 149 357 357 GLY GLY A . n A 1 150 MET 150 358 358 MET MET A . n A 1 151 SER 151 359 359 SER SER A . n A 1 152 LEU 152 360 360 LEU LEU A . n A 1 153 SER 153 361 361 SER SER A . n A 1 154 SER 154 362 362 SER SER A . n A 1 155 PHE 155 363 363 PHE PHE A . n A 1 156 ASN 156 364 364 ASN ASN A . n A 1 157 LEU 157 365 365 LEU LEU A . n A 1 158 ASP 158 366 366 ASP ASP A . n A 1 159 ASP 159 367 367 ASP ASP A . n A 1 160 THR 160 368 368 THR THR A . n A 1 161 GLU 161 369 369 GLU GLU A . n A 1 162 VAL 162 370 370 VAL VAL A . n A 1 163 ALA 163 371 371 ALA ALA A . n A 1 164 LEU 164 372 372 LEU LEU A . n A 1 165 LEU 165 373 373 LEU LEU A . n A 1 166 GLN 166 374 374 GLN GLN A . n A 1 167 ALA 167 375 375 ALA ALA A . n A 1 168 VAL 168 376 376 VAL VAL A . n A 1 169 LEU 169 377 377 LEU LEU A . n A 1 170 LEU 170 378 378 LEU LEU A . n A 1 171 MET 171 379 379 MET MET A . n A 1 172 SER 172 380 380 SER SER A . n A 1 173 SER 173 381 381 SER SER A . n A 1 174 ASP 174 382 382 ASP ASP A . n A 1 175 ARG 175 383 383 ARG ARG A . n A 1 176 PRO 176 384 384 PRO PRO A . n A 1 177 GLY 177 385 385 GLY GLY A . n A 1 178 LEU 178 386 386 LEU LEU A . n A 1 179 ALA 179 387 387 ALA ALA A . n A 1 180 CYS 180 388 388 CYS CYS A . n A 1 181 VAL 181 389 389 VAL VAL A . n A 1 182 GLU 182 390 390 GLU GLU A . n A 1 183 ARG 183 391 391 ARG ARG A . n A 1 184 ILE 184 392 392 ILE ILE A . n A 1 185 GLU 185 393 393 GLU GLU A . n A 1 186 LYS 186 394 394 LYS LYS A . n A 1 187 TYR 187 395 395 TYR TYR A . n A 1 188 GLN 188 396 396 GLN GLN A . n A 1 189 ASP 189 397 397 ASP ASP A . n A 1 190 SER 190 398 398 SER SER A . n A 1 191 PHE 191 399 399 PHE PHE A . n A 1 192 LEU 192 400 400 LEU LEU A . n A 1 193 LEU 193 401 401 LEU LEU A . n A 1 194 ALA 194 402 402 ALA ALA A . n A 1 195 PHE 195 403 403 PHE PHE A . n A 1 196 GLU 196 404 404 GLU GLU A . n A 1 197 HIS 197 405 405 HIS HIS A . n A 1 198 TYR 198 406 406 TYR TYR A . n A 1 199 ILE 199 407 407 ILE ILE A . n A 1 200 ASN 200 408 408 ASN ASN A . n A 1 201 TYR 201 409 409 TYR TYR A . n A 1 202 ARG 202 410 410 ARG ARG A . n A 1 203 LYS 203 411 411 LYS LYS A . n A 1 204 HIS 204 412 412 HIS HIS A . n A 1 205 HIS 205 413 413 HIS HIS A . n A 1 206 VAL 206 414 414 VAL VAL A . n A 1 207 THR 207 415 415 THR THR A . n A 1 208 HIS 208 416 416 HIS HIS A . n A 1 209 PHE 209 417 417 PHE PHE A . n A 1 210 TRP 210 418 418 TRP TRP A . n A 1 211 PRO 211 419 419 PRO PRO A . n A 1 212 LYS 212 420 420 LYS LYS A . n A 1 213 LEU 213 421 421 LEU LEU A . n A 1 214 LEU 214 422 422 LEU LEU A . n A 1 215 MET 215 423 423 MET MET A . n A 1 216 LYS 216 424 424 LYS LYS A . n A 1 217 VAL 217 425 425 VAL VAL A . n A 1 218 THR 218 426 426 THR THR A . n A 1 219 ASP 219 427 427 ASP ASP A . n A 1 220 LEU 220 428 428 LEU LEU A . n A 1 221 ARG 221 429 429 ARG ARG A . n A 1 222 MET 222 430 430 MET MET A . n A 1 223 ILE 223 431 431 ILE ILE A . n A 1 224 GLY 224 432 432 GLY GLY A . n A 1 225 ALA 225 433 433 ALA ALA A . n A 1 226 CYS 226 434 434 CYS CYS A . n A 1 227 HIS 227 435 435 HIS HIS A . n A 1 228 ALA 228 436 436 ALA ALA A . n A 1 229 SER 229 437 437 SER SER A . n A 1 230 ARG 230 438 438 ARG ARG A . n A 1 231 PHE 231 439 439 PHE PHE A . n A 1 232 LEU 232 440 440 LEU LEU A . n A 1 233 HIS 233 441 441 HIS HIS A . n A 1 234 MET 234 442 442 MET MET A . n A 1 235 LYS 235 443 443 LYS LYS A . n A 1 236 VAL 236 444 444 VAL VAL A . n A 1 237 GLU 237 445 445 GLU GLU A . n A 1 238 CYS 238 446 446 CYS CYS A . n A 1 239 PRO 239 447 447 PRO PRO A . n A 1 240 THR 240 448 448 THR THR A . n A 1 241 GLU 241 449 449 GLU GLU A . n A 1 242 LEU 242 450 450 LEU LEU A . n A 1 243 PHE 243 451 451 PHE PHE A . n A 1 244 PRO 244 452 452 PRO PRO A . n A 1 245 PRO 245 453 453 PRO PRO A . n A 1 246 LEU 246 454 454 LEU LEU A . n A 1 247 PHE 247 455 455 PHE PHE A . n A 1 248 LEU 248 456 456 LEU LEU A . n A 1 249 GLU 249 457 457 GLU GLU A . n A 1 250 VAL 250 458 458 VAL VAL A . n A 1 251 PHE 251 459 459 PHE PHE A . n A 1 252 GLU 252 460 460 GLU GLU A . n A 1 253 ASP 253 461 461 ASP ASP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 G24 1 462 400 G24 G24 A . C 2 G24 1 463 401 G24 G24 A . D 3 HOH 1 1 1 HOH HOH A . D 3 HOH 2 2 2 HOH HOH A . D 3 HOH 3 3 3 HOH HOH A . D 3 HOH 4 4 4 HOH HOH A . D 3 HOH 5 5 5 HOH HOH A . D 3 HOH 6 6 6 HOH HOH A . D 3 HOH 7 7 7 HOH HOH A . D 3 HOH 8 8 8 HOH HOH A . D 3 HOH 9 9 9 HOH HOH A . D 3 HOH 10 10 10 HOH HOH A . D 3 HOH 11 11 11 HOH HOH A . D 3 HOH 12 12 12 HOH HOH A . D 3 HOH 13 13 13 HOH HOH A . D 3 HOH 14 14 14 HOH HOH A . D 3 HOH 15 15 15 HOH HOH A . D 3 HOH 16 16 16 HOH HOH A . D 3 HOH 17 17 17 HOH HOH A . D 3 HOH 18 18 18 HOH HOH A . D 3 HOH 19 19 19 HOH HOH A . D 3 HOH 20 20 20 HOH HOH A . D 3 HOH 21 21 21 HOH HOH A . D 3 HOH 22 22 22 HOH HOH A . D 3 HOH 23 23 23 HOH HOH A . D 3 HOH 24 24 24 HOH HOH A . D 3 HOH 25 25 25 HOH HOH A . D 3 HOH 26 26 26 HOH HOH A . D 3 HOH 27 27 27 HOH HOH A . D 3 HOH 28 28 28 HOH HOH A . D 3 HOH 29 29 29 HOH HOH A . D 3 HOH 30 30 30 HOH HOH A . D 3 HOH 31 31 31 HOH HOH A . D 3 HOH 32 32 32 HOH HOH A . D 3 HOH 33 33 33 HOH HOH A . D 3 HOH 34 34 34 HOH HOH A . D 3 HOH 35 35 35 HOH HOH A . D 3 HOH 36 36 36 HOH HOH A . D 3 HOH 37 37 37 HOH HOH A . D 3 HOH 38 38 38 HOH HOH A . D 3 HOH 39 39 39 HOH HOH A . D 3 HOH 40 40 40 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 241 ? CG ? A GLN 33 CG 2 1 Y 1 A GLN 241 ? CD ? A GLN 33 CD 3 1 Y 1 A GLN 241 ? OE1 ? A GLN 33 OE1 4 1 Y 1 A GLN 241 ? NE2 ? A GLN 33 NE2 5 1 Y 1 A GLU 324 ? CG ? A GLU 116 CG 6 1 Y 1 A GLU 324 ? CD ? A GLU 116 CD 7 1 Y 1 A GLU 324 ? OE1 ? A GLU 116 OE1 8 1 Y 1 A GLU 324 ? OE2 ? A GLU 116 OE2 9 1 Y 1 A HIS 441 ? CG ? A HIS 233 CG 10 1 Y 1 A HIS 441 ? ND1 ? A HIS 233 ND1 11 1 Y 1 A HIS 441 ? CD2 ? A HIS 233 CD2 12 1 Y 1 A HIS 441 ? CE1 ? A HIS 233 CE1 13 1 Y 1 A HIS 441 ? NE2 ? A HIS 233 NE2 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 CNS refinement . ? 3 CNS phasing . ? 4 # _cell.entry_id 1Q4X _cell.length_a 56.570 _cell.length_b 56.570 _cell.length_c 390.050 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.pdbx_unique_axis ? _cell.Z_PDB 12 # _symmetry.entry_id 1Q4X _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 179 _symmetry.cell_setting ? # _exptl.entry_id 1Q4X _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.15 _exptl_crystal.density_percent_sol 60.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.9 _exptl_crystal_grow.pdbx_details 'PEG 3350, sodium acetate, glucose, cymal-2, pH 4.9, VAPOR DIFFUSION, SITTING DROP, temperature 291.0K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2002-02-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'DOUBLE CRYSTAL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.127 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.127 # _reflns.entry_id 1Q4X _reflns.observed_criterion_sigma_F 0.0 _reflns.observed_criterion_sigma_I 3.0 _reflns.d_resolution_high 2.8 _reflns.d_resolution_low 24.47 _reflns.number_all 10076 _reflns.number_obs 9368 _reflns.percent_possible_obs 93.0 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value 0.069 _reflns.pdbx_netI_over_sigmaI 15.8 _reflns.B_iso_Wilson_estimate 59.8 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.8 _reflns_shell.d_res_low 2.98 _reflns_shell.percent_possible_all 81.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1Q4X _refine.ls_d_res_high 2.8 _refine.ls_d_res_low 24.47 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I 3.0 _refine.ls_number_reflns_all 10075 _refine.ls_number_reflns_obs 9368 _refine.ls_number_reflns_R_free 500 _refine.ls_percent_reflns_obs 93.0 _refine.ls_R_factor_all 0.228 _refine.ls_R_factor_obs 0.228 _refine.ls_R_factor_R_work 0.216 _refine.ls_R_factor_R_free 0.264 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ;Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB ; _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model Isotropic _refine.B_iso_mean 60.08 _refine.aniso_B[1][1] 8.9 _refine.aniso_B[1][2] 14.57 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][2] 8.9 _refine.aniso_B[2][3] 0.00 _refine.aniso_B[3][3] -17.81 _refine.details ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1Q4X _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.33 _refine_analyze.Luzzati_d_res_low_obs 6.00 _refine_analyze.Luzzati_coordinate_error_free 0.45 _refine_analyze.Luzzati_sigma_a_free 0.48 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1892 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 40 _refine_hist.number_atoms_total 1988 _refine_hist.d_res_high 2.8 _refine_hist.d_res_low 24.47 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.31 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_all _refine_ls_shell.pdbx_refine_id _refine_ls_shell.R_factor_all . 2.8 2.93 . 0.281 76.7 0.369 0.055 . 45 917 . . 'X-RAY DIFFRACTION' . . 2.93 3.08 . 0.291 93.8 0.38 0.048 . 62 1141 . . 'X-RAY DIFFRACTION' . . 3.08 3.27 . 0.262 95.4 0.352 0.044 . 65 1174 . . 'X-RAY DIFFRACTION' . . 3.27 3.53 . 0.234 95.5 0.295 0.035 . 70 1179 . . 'X-RAY DIFFRACTION' . . 3.53 3.88 . 0.224 95.5 0.279 0.040 . 48 1163 . . 'X-RAY DIFFRACTION' . . 3.88 4.44 . 0.194 94.4 0.271 0.034 . 63 1200 . . 'X-RAY DIFFRACTION' . . 4.44 5.58 . 0.195 96.5 0.215 0.027 . 64 1248 . . 'X-RAY DIFFRACTION' . . 5.58 24.47 . 0.232 94.4 0.228 0.025 . 83 1346 . . 'X-RAY DIFFRACTION' . # _database_PDB_matrix.entry_id 1Q4X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1Q4X _struct.title 'Crystal Structure of Human Thyroid Hormone Receptor beta LBD in complex with specific agonist GC-24' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q4X _struct_keywords.pdbx_keywords TRANSCRIPTION _struct_keywords.text 'conformational change in two framework helices upon ligand binding, TRANSCRIPTION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code THB1_HUMAN _struct_ref.pdbx_db_accession P10828 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GHKPEPTDEEWELIKTVTEAHVATNAQGSHWKQKRKFLPEDIGQAPIVNAPEGGKVDLEAFSHFTKIITPAITRVVDFAK KLPMFCELPCEDQIILLKGCCMEIMSLRAAVRYDPESETLTLNGEMAVTRGQLKNGGLGVVSDAIFDLGMSLSSFNLDDT EVALLQAVLLMSSDRPGLACVERIEKYQDSFLLAFEHYINYRKHHVTHFWPKLLMKVTDLRMIGACHASRFLHMKVECPT ELFPPLFLEVFED ; _struct_ref.pdbx_align_begin 209 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Q4X _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 253 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P10828 _struct_ref_seq.db_align_beg 209 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 461 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 209 _struct_ref_seq.pdbx_auth_seq_align_end 461 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 7 ? ASN A 25 ? THR A 215 ASN A 233 1 ? 19 HELX_P HELX_P2 2 ASP A 57 ? LYS A 81 ? ASP A 265 LYS A 289 1 ? 25 HELX_P HELX_P3 3 LEU A 82 ? GLU A 87 ? LEU A 290 GLU A 295 1 ? 6 HELX_P HELX_P4 4 PRO A 89 ? VAL A 111 ? PRO A 297 VAL A 319 1 ? 23 HELX_P HELX_P5 5 THR A 129 ? GLY A 136 ? THR A 337 GLY A 344 1 ? 8 HELX_P HELX_P6 6 GLY A 139 ? SER A 154 ? GLY A 347 SER A 362 1 ? 16 HELX_P HELX_P7 7 ASP A 158 ? MET A 171 ? ASP A 366 MET A 379 1 ? 14 HELX_P HELX_P8 8 CYS A 180 ? LYS A 203 ? CYS A 388 LYS A 411 1 ? 24 HELX_P HELX_P9 9 HIS A 208 ? VAL A 236 ? HIS A 416 VAL A 444 1 ? 29 HELX_P HELX_P10 10 PRO A 244 ? GLU A 252 ? PRO A 452 GLU A 460 1 ? 9 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LEU A 120 ? LEU A 122 ? LEU A 328 LEU A 330 A 2 MET A 126 ? VAL A 128 ? MET A 334 VAL A 336 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id LEU _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 122 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 330 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id MET _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 126 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id MET _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 334 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A G24 462 ? 12 'BINDING SITE FOR RESIDUE G24 A 462' AC2 Software A G24 463 ? 9 'BINDING SITE FOR RESIDUE G24 A 463' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 PHE A 61 ? PHE A 269 . ? 1_555 ? 2 AC1 12 PHE A 64 ? PHE A 272 . ? 1_555 ? 3 AC1 12 THR A 65 ? THR A 273 . ? 1_555 ? 4 AC1 12 ALA A 71 ? ALA A 279 . ? 1_555 ? 5 AC1 12 ARG A 108 ? ARG A 316 . ? 1_555 ? 6 AC1 12 ARG A 112 ? ARG A 320 . ? 1_555 ? 7 AC1 12 ASN A 123 ? ASN A 331 . ? 1_555 ? 8 AC1 12 GLY A 124 ? GLY A 332 . ? 1_555 ? 9 AC1 12 LEU A 138 ? LEU A 346 . ? 1_555 ? 10 AC1 12 HIS A 227 ? HIS A 435 . ? 1_555 ? 11 AC1 12 PHE A 243 ? PHE A 451 . ? 1_555 ? 12 AC1 12 PHE A 247 ? PHE A 455 . ? 1_555 ? 13 AC2 9 HOH D . ? HOH A 25 . ? 1_555 ? 14 AC2 9 LEU A 157 ? LEU A 365 . ? 1_555 ? 15 AC2 9 ASP A 158 ? ASP A 366 . ? 1_555 ? 16 AC2 9 VAL A 168 ? VAL A 376 . ? 9_655 ? 17 AC2 9 SER A 172 ? SER A 380 . ? 9_655 ? 18 AC2 9 SER A 173 ? SER A 381 . ? 9_655 ? 19 AC2 9 GLU A 185 ? GLU A 393 . ? 9_655 ? 20 AC2 9 GLN A 188 ? GLN A 396 . ? 9_655 ? 21 AC2 9 ARG A 221 ? ARG A 429 . ? 9_655 ? # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 NE _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ARG _pdbx_validate_rmsd_angle.auth_seq_id_1 282 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CZ _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ARG _pdbx_validate_rmsd_angle.auth_seq_id_2 282 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 NH1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ARG _pdbx_validate_rmsd_angle.auth_seq_id_3 282 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 123.33 _pdbx_validate_rmsd_angle.angle_target_value 120.30 _pdbx_validate_rmsd_angle.angle_deviation 3.03 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.50 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 211 ? ? 59.18 89.59 2 1 ALA A 234 ? ? -55.95 -72.36 3 1 HIS A 238 ? ? -150.03 45.59 4 1 TRP A 239 ? ? -62.26 61.58 5 1 LYS A 240 ? ? -142.86 -36.02 6 1 LYS A 242 ? ? -143.59 -67.54 7 1 GLU A 333 ? ? -127.19 -55.56 8 1 ASN A 364 ? ? 56.94 73.53 9 1 MET A 379 ? ? -80.03 44.23 10 1 LYS A 411 ? ? 54.48 73.75 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 GLY A 236 ? ? SER A 237 ? ? -132.40 2 1 LYS A 263 ? ? VAL A 264 ? ? 138.71 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id GLY _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 236 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 20.36 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLU 248 ? A GLU 40 2 1 Y 1 A ASP 249 ? A ASP 41 3 1 Y 1 A ILE 250 ? A ILE 42 4 1 Y 1 A GLY 251 ? A GLY 43 5 1 Y 1 A GLN 252 ? A GLN 44 6 1 Y 1 A ALA 253 ? A ALA 45 7 1 Y 1 A PRO 254 ? A PRO 46 8 1 Y 1 A ILE 255 ? A ILE 47 9 1 Y 1 A VAL 256 ? A VAL 48 10 1 Y 1 A ASN 257 ? A ASN 49 11 1 Y 1 A ALA 258 ? A ALA 50 12 1 Y 1 A PRO 259 ? A PRO 51 13 1 Y 1 A GLU 260 ? A GLU 52 14 1 Y 1 A GLY 261 ? A GLY 53 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 G24 CAF C Y N 88 G24 CAB C Y N 89 G24 CAC C Y N 90 G24 CAD C Y N 91 G24 CAH C Y N 92 G24 CAG C Y N 93 G24 CAQ C N N 94 G24 CAP C Y N 95 G24 CAO C Y N 96 G24 CBA C Y N 97 G24 OBC O N N 98 G24 CAZ C Y N 99 G24 CAY C Y N 100 G24 CAN C Y N 101 G24 CAM C N N 102 G24 CAL C Y N 103 G24 CAX C Y N 104 G24 CBB C N N 105 G24 CAW C Y N 106 G24 CAK C Y N 107 G24 CAE C N N 108 G24 CAJ C Y N 109 G24 CAV C Y N 110 G24 OAU O N N 111 G24 CAT C N N 112 G24 CAS C N N 113 G24 OAR O N N 114 G24 OAI O N N 115 G24 HAF H N N 116 G24 HAB H N N 117 G24 HAC H N N 118 G24 HAD H N N 119 G24 HAH H N N 120 G24 HAQ1 H N N 121 G24 HAQ2 H N N 122 G24 HAO H N N 123 G24 HBC H N N 124 G24 HAZ H N N 125 G24 HAY H N N 126 G24 HAM1 H N N 127 G24 HAM2 H N N 128 G24 HBB1 H N N 129 G24 HBB2 H N N 130 G24 HBB3 H N N 131 G24 HAW H N N 132 G24 HAE1 H N N 133 G24 HAE2 H N N 134 G24 HAE3 H N N 135 G24 HAJ H N N 136 G24 HAT1 H N N 137 G24 HAT2 H N N 138 G24 HAR H N N 139 GLN N N N N 140 GLN CA C N S 141 GLN C C N N 142 GLN O O N N 143 GLN CB C N N 144 GLN CG C N N 145 GLN CD C N N 146 GLN OE1 O N N 147 GLN NE2 N N N 148 GLN OXT O N N 149 GLN H H N N 150 GLN H2 H N N 151 GLN HA H N N 152 GLN HB2 H N N 153 GLN HB3 H N N 154 GLN HG2 H N N 155 GLN HG3 H N N 156 GLN HE21 H N N 157 GLN HE22 H N N 158 GLN HXT H N N 159 GLU N N N N 160 GLU CA C N S 161 GLU C C N N 162 GLU O O N N 163 GLU CB C N N 164 GLU CG C N N 165 GLU CD C N N 166 GLU OE1 O N N 167 GLU OE2 O N N 168 GLU OXT O N N 169 GLU H H N N 170 GLU H2 H N N 171 GLU HA H N N 172 GLU HB2 H N N 173 GLU HB3 H N N 174 GLU HG2 H N N 175 GLU HG3 H N N 176 GLU HE2 H N N 177 GLU HXT H N N 178 GLY N N N N 179 GLY CA C N N 180 GLY C C N N 181 GLY O O N N 182 GLY OXT O N N 183 GLY H H N N 184 GLY H2 H N N 185 GLY HA2 H N N 186 GLY HA3 H N N 187 GLY HXT H N N 188 HIS N N N N 189 HIS CA C N S 190 HIS C C N N 191 HIS O O N N 192 HIS CB C N N 193 HIS CG C Y N 194 HIS ND1 N Y N 195 HIS CD2 C Y N 196 HIS CE1 C Y N 197 HIS NE2 N Y N 198 HIS OXT O N N 199 HIS H H N N 200 HIS H2 H N N 201 HIS HA H N N 202 HIS HB2 H N N 203 HIS HB3 H N N 204 HIS HD1 H N N 205 HIS HD2 H N N 206 HIS HE1 H N N 207 HIS HE2 H N N 208 HIS HXT H N N 209 HOH O O N N 210 HOH H1 H N N 211 HOH H2 H N N 212 ILE N N N N 213 ILE CA C N S 214 ILE C C N N 215 ILE O O N N 216 ILE CB C N S 217 ILE CG1 C N N 218 ILE CG2 C N N 219 ILE CD1 C N N 220 ILE OXT O N N 221 ILE H H N N 222 ILE H2 H N N 223 ILE HA H N N 224 ILE HB H N N 225 ILE HG12 H N N 226 ILE HG13 H N N 227 ILE HG21 H N N 228 ILE HG22 H N N 229 ILE HG23 H N N 230 ILE HD11 H N N 231 ILE HD12 H N N 232 ILE HD13 H N N 233 ILE HXT H N N 234 LEU N N N N 235 LEU CA C N S 236 LEU C C N N 237 LEU O O N N 238 LEU CB C N N 239 LEU CG C N N 240 LEU CD1 C N N 241 LEU CD2 C N N 242 LEU OXT O N N 243 LEU H H N N 244 LEU H2 H N N 245 LEU HA H N N 246 LEU HB2 H N N 247 LEU HB3 H N N 248 LEU HG H N N 249 LEU HD11 H N N 250 LEU HD12 H N N 251 LEU HD13 H N N 252 LEU HD21 H N N 253 LEU HD22 H N N 254 LEU HD23 H N N 255 LEU HXT H N N 256 LYS N N N N 257 LYS CA C N S 258 LYS C C N N 259 LYS O O N N 260 LYS CB C N N 261 LYS CG C N N 262 LYS CD C N N 263 LYS CE C N N 264 LYS NZ N N N 265 LYS OXT O N N 266 LYS H H N N 267 LYS H2 H N N 268 LYS HA H N N 269 LYS HB2 H N N 270 LYS HB3 H N N 271 LYS HG2 H N N 272 LYS HG3 H N N 273 LYS HD2 H N N 274 LYS HD3 H N N 275 LYS HE2 H N N 276 LYS HE3 H N N 277 LYS HZ1 H N N 278 LYS HZ2 H N N 279 LYS HZ3 H N N 280 LYS HXT H N N 281 MET N N N N 282 MET CA C N S 283 MET C C N N 284 MET O O N N 285 MET CB C N N 286 MET CG C N N 287 MET SD S N N 288 MET CE C N N 289 MET OXT O N N 290 MET H H N N 291 MET H2 H N N 292 MET HA H N N 293 MET HB2 H N N 294 MET HB3 H N N 295 MET HG2 H N N 296 MET HG3 H N N 297 MET HE1 H N N 298 MET HE2 H N N 299 MET HE3 H N N 300 MET HXT H N N 301 PHE N N N N 302 PHE CA C N S 303 PHE C C N N 304 PHE O O N N 305 PHE CB C N N 306 PHE CG C Y N 307 PHE CD1 C Y N 308 PHE CD2 C Y N 309 PHE CE1 C Y N 310 PHE CE2 C Y N 311 PHE CZ C Y N 312 PHE OXT O N N 313 PHE H H N N 314 PHE H2 H N N 315 PHE HA H N N 316 PHE HB2 H N N 317 PHE HB3 H N N 318 PHE HD1 H N N 319 PHE HD2 H N N 320 PHE HE1 H N N 321 PHE HE2 H N N 322 PHE HZ H N N 323 PHE HXT H N N 324 PRO N N N N 325 PRO CA C N S 326 PRO C C N N 327 PRO O O N N 328 PRO CB C N N 329 PRO CG C N N 330 PRO CD C N N 331 PRO OXT O N N 332 PRO H H N N 333 PRO HA H N N 334 PRO HB2 H N N 335 PRO HB3 H N N 336 PRO HG2 H N N 337 PRO HG3 H N N 338 PRO HD2 H N N 339 PRO HD3 H N N 340 PRO HXT H N N 341 SER N N N N 342 SER CA C N S 343 SER C C N N 344 SER O O N N 345 SER CB C N N 346 SER OG O N N 347 SER OXT O N N 348 SER H H N N 349 SER H2 H N N 350 SER HA H N N 351 SER HB2 H N N 352 SER HB3 H N N 353 SER HG H N N 354 SER HXT H N N 355 THR N N N N 356 THR CA C N S 357 THR C C N N 358 THR O O N N 359 THR CB C N R 360 THR OG1 O N N 361 THR CG2 C N N 362 THR OXT O N N 363 THR H H N N 364 THR H2 H N N 365 THR HA H N N 366 THR HB H N N 367 THR HG1 H N N 368 THR HG21 H N N 369 THR HG22 H N N 370 THR HG23 H N N 371 THR HXT H N N 372 TRP N N N N 373 TRP CA C N S 374 TRP C C N N 375 TRP O O N N 376 TRP CB C N N 377 TRP CG C Y N 378 TRP CD1 C Y N 379 TRP CD2 C Y N 380 TRP NE1 N Y N 381 TRP CE2 C Y N 382 TRP CE3 C Y N 383 TRP CZ2 C Y N 384 TRP CZ3 C Y N 385 TRP CH2 C Y N 386 TRP OXT O N N 387 TRP H H N N 388 TRP H2 H N N 389 TRP HA H N N 390 TRP HB2 H N N 391 TRP HB3 H N N 392 TRP HD1 H N N 393 TRP HE1 H N N 394 TRP HE3 H N N 395 TRP HZ2 H N N 396 TRP HZ3 H N N 397 TRP HH2 H N N 398 TRP HXT H N N 399 TYR N N N N 400 TYR CA C N S 401 TYR C C N N 402 TYR O O N N 403 TYR CB C N N 404 TYR CG C Y N 405 TYR CD1 C Y N 406 TYR CD2 C Y N 407 TYR CE1 C Y N 408 TYR CE2 C Y N 409 TYR CZ C Y N 410 TYR OH O N N 411 TYR OXT O N N 412 TYR H H N N 413 TYR H2 H N N 414 TYR HA H N N 415 TYR HB2 H N N 416 TYR HB3 H N N 417 TYR HD1 H N N 418 TYR HD2 H N N 419 TYR HE1 H N N 420 TYR HE2 H N N 421 TYR HH H N N 422 TYR HXT H N N 423 VAL N N N N 424 VAL CA C N S 425 VAL C C N N 426 VAL O O N N 427 VAL CB C N N 428 VAL CG1 C N N 429 VAL CG2 C N N 430 VAL OXT O N N 431 VAL H H N N 432 VAL H2 H N N 433 VAL HA H N N 434 VAL HB H N N 435 VAL HG11 H N N 436 VAL HG12 H N N 437 VAL HG13 H N N 438 VAL HG21 H N N 439 VAL HG22 H N N 440 VAL HG23 H N N 441 VAL HXT H N N 442 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 G24 CAF CAB doub Y N 83 G24 CAF CAG sing Y N 84 G24 CAF HAF sing N N 85 G24 CAB CAC sing Y N 86 G24 CAB HAB sing N N 87 G24 CAC CAD doub Y N 88 G24 CAC HAC sing N N 89 G24 CAD CAH sing Y N 90 G24 CAD HAD sing N N 91 G24 CAH CAG doub Y N 92 G24 CAH HAH sing N N 93 G24 CAG CAQ sing N N 94 G24 CAQ CAP sing N N 95 G24 CAQ HAQ1 sing N N 96 G24 CAQ HAQ2 sing N N 97 G24 CAP CAO doub Y N 98 G24 CAP CBA sing Y N 99 G24 CAO CAN sing Y N 100 G24 CAO HAO sing N N 101 G24 CBA OBC sing N N 102 G24 CBA CAZ doub Y N 103 G24 OBC HBC sing N N 104 G24 CAZ CAY sing Y N 105 G24 CAZ HAZ sing N N 106 G24 CAY CAN doub Y N 107 G24 CAY HAY sing N N 108 G24 CAN CAM sing N N 109 G24 CAM CAL sing N N 110 G24 CAM HAM1 sing N N 111 G24 CAM HAM2 sing N N 112 G24 CAL CAX doub Y N 113 G24 CAL CAK sing Y N 114 G24 CAX CBB sing N N 115 G24 CAX CAW sing Y N 116 G24 CBB HBB1 sing N N 117 G24 CBB HBB2 sing N N 118 G24 CBB HBB3 sing N N 119 G24 CAW CAV doub Y N 120 G24 CAW HAW sing N N 121 G24 CAK CAE sing N N 122 G24 CAK CAJ doub Y N 123 G24 CAE HAE1 sing N N 124 G24 CAE HAE2 sing N N 125 G24 CAE HAE3 sing N N 126 G24 CAJ CAV sing Y N 127 G24 CAJ HAJ sing N N 128 G24 CAV OAU sing N N 129 G24 OAU CAT sing N N 130 G24 CAT CAS sing N N 131 G24 CAT HAT1 sing N N 132 G24 CAT HAT2 sing N N 133 G24 CAS OAR sing N N 134 G24 CAS OAI doub N N 135 G24 OAR HAR sing N N 136 GLN N CA sing N N 137 GLN N H sing N N 138 GLN N H2 sing N N 139 GLN CA C sing N N 140 GLN CA CB sing N N 141 GLN CA HA sing N N 142 GLN C O doub N N 143 GLN C OXT sing N N 144 GLN CB CG sing N N 145 GLN CB HB2 sing N N 146 GLN CB HB3 sing N N 147 GLN CG CD sing N N 148 GLN CG HG2 sing N N 149 GLN CG HG3 sing N N 150 GLN CD OE1 doub N N 151 GLN CD NE2 sing N N 152 GLN NE2 HE21 sing N N 153 GLN NE2 HE22 sing N N 154 GLN OXT HXT sing N N 155 GLU N CA sing N N 156 GLU N H sing N N 157 GLU N H2 sing N N 158 GLU CA C sing N N 159 GLU CA CB sing N N 160 GLU CA HA sing N N 161 GLU C O doub N N 162 GLU C OXT sing N N 163 GLU CB CG sing N N 164 GLU CB HB2 sing N N 165 GLU CB HB3 sing N N 166 GLU CG CD sing N N 167 GLU CG HG2 sing N N 168 GLU CG HG3 sing N N 169 GLU CD OE1 doub N N 170 GLU CD OE2 sing N N 171 GLU OE2 HE2 sing N N 172 GLU OXT HXT sing N N 173 GLY N CA sing N N 174 GLY N H sing N N 175 GLY N H2 sing N N 176 GLY CA C sing N N 177 GLY CA HA2 sing N N 178 GLY CA HA3 sing N N 179 GLY C O doub N N 180 GLY C OXT sing N N 181 GLY OXT HXT sing N N 182 HIS N CA sing N N 183 HIS N H sing N N 184 HIS N H2 sing N N 185 HIS CA C sing N N 186 HIS CA CB sing N N 187 HIS CA HA sing N N 188 HIS C O doub N N 189 HIS C OXT sing N N 190 HIS CB CG sing N N 191 HIS CB HB2 sing N N 192 HIS CB HB3 sing N N 193 HIS CG ND1 sing Y N 194 HIS CG CD2 doub Y N 195 HIS ND1 CE1 doub Y N 196 HIS ND1 HD1 sing N N 197 HIS CD2 NE2 sing Y N 198 HIS CD2 HD2 sing N N 199 HIS CE1 NE2 sing Y N 200 HIS CE1 HE1 sing N N 201 HIS NE2 HE2 sing N N 202 HIS OXT HXT sing N N 203 HOH O H1 sing N N 204 HOH O H2 sing N N 205 ILE N CA sing N N 206 ILE N H sing N N 207 ILE N H2 sing N N 208 ILE CA C sing N N 209 ILE CA CB sing N N 210 ILE CA HA sing N N 211 ILE C O doub N N 212 ILE C OXT sing N N 213 ILE CB CG1 sing N N 214 ILE CB CG2 sing N N 215 ILE CB HB sing N N 216 ILE CG1 CD1 sing N N 217 ILE CG1 HG12 sing N N 218 ILE CG1 HG13 sing N N 219 ILE CG2 HG21 sing N N 220 ILE CG2 HG22 sing N N 221 ILE CG2 HG23 sing N N 222 ILE CD1 HD11 sing N N 223 ILE CD1 HD12 sing N N 224 ILE CD1 HD13 sing N N 225 ILE OXT HXT sing N N 226 LEU N CA sing N N 227 LEU N H sing N N 228 LEU N H2 sing N N 229 LEU CA C sing N N 230 LEU CA CB sing N N 231 LEU CA HA sing N N 232 LEU C O doub N N 233 LEU C OXT sing N N 234 LEU CB CG sing N N 235 LEU CB HB2 sing N N 236 LEU CB HB3 sing N N 237 LEU CG CD1 sing N N 238 LEU CG CD2 sing N N 239 LEU CG HG sing N N 240 LEU CD1 HD11 sing N N 241 LEU CD1 HD12 sing N N 242 LEU CD1 HD13 sing N N 243 LEU CD2 HD21 sing N N 244 LEU CD2 HD22 sing N N 245 LEU CD2 HD23 sing N N 246 LEU OXT HXT sing N N 247 LYS N CA sing N N 248 LYS N H sing N N 249 LYS N H2 sing N N 250 LYS CA C sing N N 251 LYS CA CB sing N N 252 LYS CA HA sing N N 253 LYS C O doub N N 254 LYS C OXT sing N N 255 LYS CB CG sing N N 256 LYS CB HB2 sing N N 257 LYS CB HB3 sing N N 258 LYS CG CD sing N N 259 LYS CG HG2 sing N N 260 LYS CG HG3 sing N N 261 LYS CD CE sing N N 262 LYS CD HD2 sing N N 263 LYS CD HD3 sing N N 264 LYS CE NZ sing N N 265 LYS CE HE2 sing N N 266 LYS CE HE3 sing N N 267 LYS NZ HZ1 sing N N 268 LYS NZ HZ2 sing N N 269 LYS NZ HZ3 sing N N 270 LYS OXT HXT sing N N 271 MET N CA sing N N 272 MET N H sing N N 273 MET N H2 sing N N 274 MET CA C sing N N 275 MET CA CB sing N N 276 MET CA HA sing N N 277 MET C O doub N N 278 MET C OXT sing N N 279 MET CB CG sing N N 280 MET CB HB2 sing N N 281 MET CB HB3 sing N N 282 MET CG SD sing N N 283 MET CG HG2 sing N N 284 MET CG HG3 sing N N 285 MET SD CE sing N N 286 MET CE HE1 sing N N 287 MET CE HE2 sing N N 288 MET CE HE3 sing N N 289 MET OXT HXT sing N N 290 PHE N CA sing N N 291 PHE N H sing N N 292 PHE N H2 sing N N 293 PHE CA C sing N N 294 PHE CA CB sing N N 295 PHE CA HA sing N N 296 PHE C O doub N N 297 PHE C OXT sing N N 298 PHE CB CG sing N N 299 PHE CB HB2 sing N N 300 PHE CB HB3 sing N N 301 PHE CG CD1 doub Y N 302 PHE CG CD2 sing Y N 303 PHE CD1 CE1 sing Y N 304 PHE CD1 HD1 sing N N 305 PHE CD2 CE2 doub Y N 306 PHE CD2 HD2 sing N N 307 PHE CE1 CZ doub Y N 308 PHE CE1 HE1 sing N N 309 PHE CE2 CZ sing Y N 310 PHE CE2 HE2 sing N N 311 PHE CZ HZ sing N N 312 PHE OXT HXT sing N N 313 PRO N CA sing N N 314 PRO N CD sing N N 315 PRO N H sing N N 316 PRO CA C sing N N 317 PRO CA CB sing N N 318 PRO CA HA sing N N 319 PRO C O doub N N 320 PRO C OXT sing N N 321 PRO CB CG sing N N 322 PRO CB HB2 sing N N 323 PRO CB HB3 sing N N 324 PRO CG CD sing N N 325 PRO CG HG2 sing N N 326 PRO CG HG3 sing N N 327 PRO CD HD2 sing N N 328 PRO CD HD3 sing N N 329 PRO OXT HXT sing N N 330 SER N CA sing N N 331 SER N H sing N N 332 SER N H2 sing N N 333 SER CA C sing N N 334 SER CA CB sing N N 335 SER CA HA sing N N 336 SER C O doub N N 337 SER C OXT sing N N 338 SER CB OG sing N N 339 SER CB HB2 sing N N 340 SER CB HB3 sing N N 341 SER OG HG sing N N 342 SER OXT HXT sing N N 343 THR N CA sing N N 344 THR N H sing N N 345 THR N H2 sing N N 346 THR CA C sing N N 347 THR CA CB sing N N 348 THR CA HA sing N N 349 THR C O doub N N 350 THR C OXT sing N N 351 THR CB OG1 sing N N 352 THR CB CG2 sing N N 353 THR CB HB sing N N 354 THR OG1 HG1 sing N N 355 THR CG2 HG21 sing N N 356 THR CG2 HG22 sing N N 357 THR CG2 HG23 sing N N 358 THR OXT HXT sing N N 359 TRP N CA sing N N 360 TRP N H sing N N 361 TRP N H2 sing N N 362 TRP CA C sing N N 363 TRP CA CB sing N N 364 TRP CA HA sing N N 365 TRP C O doub N N 366 TRP C OXT sing N N 367 TRP CB CG sing N N 368 TRP CB HB2 sing N N 369 TRP CB HB3 sing N N 370 TRP CG CD1 doub Y N 371 TRP CG CD2 sing Y N 372 TRP CD1 NE1 sing Y N 373 TRP CD1 HD1 sing N N 374 TRP CD2 CE2 doub Y N 375 TRP CD2 CE3 sing Y N 376 TRP NE1 CE2 sing Y N 377 TRP NE1 HE1 sing N N 378 TRP CE2 CZ2 sing Y N 379 TRP CE3 CZ3 doub Y N 380 TRP CE3 HE3 sing N N 381 TRP CZ2 CH2 doub Y N 382 TRP CZ2 HZ2 sing N N 383 TRP CZ3 CH2 sing Y N 384 TRP CZ3 HZ3 sing N N 385 TRP CH2 HH2 sing N N 386 TRP OXT HXT sing N N 387 TYR N CA sing N N 388 TYR N H sing N N 389 TYR N H2 sing N N 390 TYR CA C sing N N 391 TYR CA CB sing N N 392 TYR CA HA sing N N 393 TYR C O doub N N 394 TYR C OXT sing N N 395 TYR CB CG sing N N 396 TYR CB HB2 sing N N 397 TYR CB HB3 sing N N 398 TYR CG CD1 doub Y N 399 TYR CG CD2 sing Y N 400 TYR CD1 CE1 sing Y N 401 TYR CD1 HD1 sing N N 402 TYR CD2 CE2 doub Y N 403 TYR CD2 HD2 sing N N 404 TYR CE1 CZ doub Y N 405 TYR CE1 HE1 sing N N 406 TYR CE2 CZ sing Y N 407 TYR CE2 HE2 sing N N 408 TYR CZ OH sing N N 409 TYR OH HH sing N N 410 TYR OXT HXT sing N N 411 VAL N CA sing N N 412 VAL N H sing N N 413 VAL N H2 sing N N 414 VAL CA C sing N N 415 VAL CA CB sing N N 416 VAL CA HA sing N N 417 VAL C O doub N N 418 VAL C OXT sing N N 419 VAL CB CG1 sing N N 420 VAL CB CG2 sing N N 421 VAL CB HB sing N N 422 VAL CG1 HG11 sing N N 423 VAL CG1 HG12 sing N N 424 VAL CG1 HG13 sing N N 425 VAL CG2 HG21 sing N N 426 VAL CG2 HG22 sing N N 427 VAL CG2 HG23 sing N N 428 VAL OXT HXT sing N N 429 # _pdbx_initial_refinement_model.accession_code ? _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name Other _pdbx_initial_refinement_model.details ;Human Thyroid Hormone Receptor beta in complex with agonist GC-1; the crystal structure was solved in our lab, but not deposited at the PDB ; # _atom_sites.entry_id 1Q4X _atom_sites.fract_transf_matrix[1][1] 0.017677 _atom_sites.fract_transf_matrix[1][2] 0.010206 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.020412 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.002564 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_