HEADER ISOMERASE 14-AUG-03 1Q6U TITLE CRYSTAL STRUCTURE OF FKPA FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPIASE, ROTAMASE; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: FKPA OR B3347; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: MC4100 DERIVATIVE; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTFKP KEYWDS CHAPERONE, PEPTIDYL-PROLYL ISOMERASE, HEAT SHOCK PROTEIN, FKBP KEYWDS 2 FAMILY, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR F.A.SAUL,J.-P.ARIE,B.VULLIEZ-LE NORMAND,R.KAHN,J.-M.BETTON, AUTHOR 2 G.A.BENTLEY REVDAT 4 16-AUG-23 1Q6U 1 REMARK LINK REVDAT 3 13-JUL-11 1Q6U 1 VERSN REVDAT 2 24-FEB-09 1Q6U 1 VERSN REVDAT 1 13-JAN-04 1Q6U 0 JRNL AUTH F.A.SAUL,J.P.ARIE,B.VULLIEZ-LE NORMAND,R.KAHN,J.M.BETTON, JRNL AUTH 2 G.A.BENTLEY JRNL TITL STRUCTURAL AND FUNCTIONAL STUDIES OF FKPA FROM ESCHERICHIA JRNL TITL 2 COLI, A CIS/TRANS PEPTIDYL-PROLYL ISOMERASE WITH CHAPERONE JRNL TITL 3 ACTIVITY. JRNL REF J.MOL.BIOL. V. 335 595 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 14672666 JRNL DOI 10.1016/J.JMB.2003.10.056 REMARK 2 REMARK 2 RESOLUTION. 2.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 11498 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.277 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 602 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 40 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 REFLECTION IN BIN (WORKING SET) : 394 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 20 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1609 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.75000 REMARK 3 B22 (A**2) : -2.63000 REMARK 3 B33 (A**2) : -2.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.324 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.268 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.265 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.426 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.889 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1634 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1486 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2194 ; 1.698 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3510 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 212 ; 4.121 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 339 ;22.845 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 239 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1821 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 282 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 396 ; 0.269 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1455 ; 0.225 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 117 ; 0.265 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.012 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.067 ; 0.500 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 28 ; 0.291 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 82 ; 0.197 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.742 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.151 ; 0.500 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1052 ; 1.253 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1673 ; 2.222 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 582 ; 2.130 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 521 ; 3.679 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 69 REMARK 3 ORIGIN FOR THE GROUP (A): 21.0325 2.8871 20.8206 REMARK 3 T TENSOR REMARK 3 T11: 0.2081 T22: 0.0835 REMARK 3 T33: 0.1019 T12: 0.0221 REMARK 3 T13: 0.0223 T23: -0.0225 REMARK 3 L TENSOR REMARK 3 L11: 1.5660 L22: -0.1350 REMARK 3 L33: 7.0115 L12: 0.5316 REMARK 3 L13: 0.3594 L23: 0.9906 REMARK 3 S TENSOR REMARK 3 S11: 0.0075 S12: -0.0364 S13: 0.2390 REMARK 3 S21: -0.1136 S22: 0.0641 S23: 0.0993 REMARK 3 S31: -0.8067 S32: -0.0514 S33: -0.0715 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 70 A 112 REMARK 3 ORIGIN FOR THE GROUP (A): 31.3611 23.2989 8.1993 REMARK 3 T TENSOR REMARK 3 T11: 0.1804 T22: 0.1242 REMARK 3 T33: 0.2776 T12: -0.0396 REMARK 3 T13: 0.0044 T23: -0.0283 REMARK 3 L TENSOR REMARK 3 L11: 1.3855 L22: 48.0140 REMARK 3 L33: 0.7215 L12: 10.4638 REMARK 3 L13: 1.9848 L23: 8.7258 REMARK 3 S TENSOR REMARK 3 S11: -0.2463 S12: 0.0582 S13: -0.0022 REMARK 3 S21: -0.9986 S22: 0.3228 S23: -0.0590 REMARK 3 S31: -0.1652 S32: 0.0830 S33: -0.0766 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 113 A 227 REMARK 3 ORIGIN FOR THE GROUP (A): 48.9737 42.2368 18.8992 REMARK 3 T TENSOR REMARK 3 T11: 0.0247 T22: 0.0915 REMARK 3 T33: 0.0298 T12: 0.0126 REMARK 3 T13: 0.0253 T23: -0.0053 REMARK 3 L TENSOR REMARK 3 L11: 6.6973 L22: 1.6124 REMARK 3 L33: 4.5779 L12: 0.0264 REMARK 3 L13: 3.1427 L23: 0.3612 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.3102 S13: -0.3671 REMARK 3 S21: 0.2379 S22: -0.0616 S23: 0.0617 REMARK 3 S31: 0.4278 S32: 0.2218 S33: 0.0326 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1Q6U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000019989. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-01 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12110 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 7.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.44100 REMARK 200 R SYM FOR SHELL (I) : 0.39400 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1FD9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, JEFFAMINE M600, CSCL, PH 6.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 296K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 20.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 20.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.59000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 66.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.59000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 66.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 20.89000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.59000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 66.37500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 20.89000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.59000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 66.37500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER. THE SECOND PART OF THE REMARK 300 BIOLOGICAL ASSEMBLY IS GENERATED BY THE SYMMETRY OPERATION: X, -Y, REMARK 300 1-Z REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 4770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -77.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 41.78000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 GLU A 2 REMARK 465 ALA A 3 REMARK 465 ALA A 4 REMARK 465 LYS A 5 REMARK 465 PRO A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 ASP A 11 REMARK 465 SER A 12 REMARK 465 LYS A 13 REMARK 465 ALA A 14 REMARK 465 LYS A 228 REMARK 465 ALA A 229 REMARK 465 ASP A 230 REMARK 465 ALA A 231 REMARK 465 LYS A 232 REMARK 465 PRO A 233 REMARK 465 GLU A 234 REMARK 465 ALA A 235 REMARK 465 ASP A 236 REMARK 465 ALA A 237 REMARK 465 LYS A 238 REMARK 465 ALA A 239 REMARK 465 ALA A 240 REMARK 465 ASP A 241 REMARK 465 SER A 242 REMARK 465 ALA A 243 REMARK 465 LYS A 244 REMARK 465 LYS A 245 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 158 CG OD1 ND2 REMARK 470 TYR A 160 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 160 OH REMARK 470 THR A 161 CB OG1 CG2 REMARK 470 ARG A 162 CB CG CD NE CZ NH1 NH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR A 160 REMARK 475 THR A 161 REMARK 475 ARG A 162 REMARK 475 GLY A 163 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 70 O HOH A 313 1.82 REMARK 500 O HOH A 358 O HOH A 359 1.88 REMARK 500 O ASN A 158 N TYR A 160 1.89 REMARK 500 O HOH A 295 O HOH A 362 1.91 REMARK 500 O HOH A 333 O HOH A 344 2.02 REMARK 500 O VAL A 116 O HOH A 347 2.13 REMARK 500 OD1 ASP A 138 NZ LYS A 182 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD1 ASP A 138 O HOH A 351 3655 1.33 REMARK 500 O HOH A 287 O HOH A 351 3655 1.44 REMARK 500 O HOH A 294 O HOH A 348 7545 1.52 REMARK 500 O HOH A 294 O HOH A 350 7545 1.81 REMARK 500 OD2 ASP A 19 O HOH A 352 7546 1.89 REMARK 500 OE2 GLU A 164 OE2 GLU A 164 3656 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 19 CB - CG - OD2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 33 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ASP A 70 CB - CG - OD2 ANGL. DEV. = 9.3 DEGREES REMARK 500 ASP A 138 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 65 32.12 -145.79 REMARK 500 SER A 159 -83.71 27.24 REMARK 500 TYR A 160 -69.26 -19.70 REMARK 500 ARG A 162 -4.88 -57.98 REMARK 500 ALA A 199 -115.28 -136.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CS A 246 CS REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 66 O REMARK 620 2 ALA A 111 O 159.9 REMARK 620 3 GLU A 113 O 114.5 81.0 REMARK 620 4 VAL A 116 O 87.6 79.8 88.6 REMARK 620 5 HOH A 248 O 85.4 81.0 159.6 97.5 REMARK 620 6 HOH A 249 O 94.8 94.8 100.5 168.6 71.6 REMARK 620 7 HOH A 347 O 49.8 117.7 98.9 38.3 97.8 144.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CS A 246 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q6H RELATED DB: PDB REMARK 900 FKPA WITH TRUNCATED C-TERMINAL EXTENSION REMARK 900 RELATED ID: 1Q6I RELATED DB: PDB REMARK 900 FKPA COMPLEX WITH FK506 REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO DENSITY WAS INTERPRETED FOR THE MAIN POLYPEPTIDE CHAIN REMARK 999 AT TYR160, THR161, ARG162 AND GLY163. OCCUPANCY FACTORS REMARK 999 ARE SET TO ZERO FOR THESE RESIDUES. DBREF 1Q6U A 1 245 UNP P45523 FKBA_ECOLI 26 270 SEQRES 1 A 245 ALA GLU ALA ALA LYS PRO ALA THR ALA ALA ASP SER LYS SEQRES 2 A 245 ALA ALA PHE LYS ASN ASP ASP GLN LYS SER ALA TYR ALA SEQRES 3 A 245 LEU GLY ALA SER LEU GLY ARG TYR MET GLU ASN SER LEU SEQRES 4 A 245 LYS GLU GLN GLU LYS LEU GLY ILE LYS LEU ASP LYS ASP SEQRES 5 A 245 GLN LEU ILE ALA GLY VAL GLN ASP ALA PHE ALA ASP LYS SEQRES 6 A 245 SER LYS LEU SER ASP GLN GLU ILE GLU GLN THR LEU GLN SEQRES 7 A 245 ALA PHE GLU ALA ARG VAL LYS SER SER ALA GLN ALA LYS SEQRES 8 A 245 MET GLU LYS ASP ALA ALA ASP ASN GLU ALA LYS GLY LYS SEQRES 9 A 245 GLU TYR ARG GLU LYS PHE ALA LYS GLU LYS GLY VAL LYS SEQRES 10 A 245 THR SER SER THR GLY LEU VAL TYR GLN VAL VAL GLU ALA SEQRES 11 A 245 GLY LYS GLY GLU ALA PRO LYS ASP SER ASP THR VAL VAL SEQRES 12 A 245 VAL ASN TYR LYS GLY THR LEU ILE ASP GLY LYS GLU PHE SEQRES 13 A 245 ASP ASN SER TYR THR ARG GLY GLU PRO LEU SER PHE ARG SEQRES 14 A 245 LEU ASP GLY VAL ILE PRO GLY TRP THR GLU GLY LEU LYS SEQRES 15 A 245 ASN ILE LYS LYS GLY GLY LYS ILE LYS LEU VAL ILE PRO SEQRES 16 A 245 PRO GLU LEU ALA TYR GLY LYS ALA GLY VAL PRO GLY ILE SEQRES 17 A 245 PRO PRO ASN SER THR LEU VAL PHE ASP VAL GLU LEU LEU SEQRES 18 A 245 ASP VAL LYS PRO ALA PRO LYS ALA ASP ALA LYS PRO GLU SEQRES 19 A 245 ALA ASP ALA LYS ALA ALA ASP SER ALA LYS LYS HET CS A 246 1 HETNAM CS CESIUM ION FORMUL 2 CS CS 1+ FORMUL 3 HOH *116(H2 O) HELIX 1 1 ASN A 18 LYS A 44 1 27 HELIX 2 2 ASP A 50 ALA A 63 1 14 HELIX 3 3 SER A 69 LYS A 112 1 44 HELIX 4 4 ASN A 158 GLY A 163 5 6 HELIX 5 5 ILE A 174 LYS A 182 1 9 HELIX 6 6 PRO A 195 ALA A 199 5 5 SHEET 1 A 6 VAL A 116 THR A 118 0 SHEET 2 A 6 VAL A 124 GLU A 129 -1 O TYR A 125 N LYS A 117 SHEET 3 A 6 LYS A 189 ILE A 194 -1 O LYS A 191 N GLN A 126 SHEET 4 A 6 LEU A 214 LYS A 224 -1 O PHE A 216 N LEU A 192 SHEET 5 A 6 THR A 141 LEU A 150 -1 N THR A 141 O LYS A 224 SHEET 6 A 6 LEU A 166 ARG A 169 -1 O PHE A 168 N VAL A 142 LINK O SER A 66 CS CS A 246 7555 1555 3.42 LINK O ALA A 111 CS CS A 246 1555 1555 3.01 LINK O GLU A 113 CS CS A 246 1555 1555 3.14 LINK O VAL A 116 CS CS A 246 1555 1555 3.05 LINK CS CS A 246 O HOH A 248 1555 7555 3.51 LINK CS CS A 246 O HOH A 249 1555 7555 3.20 LINK CS CS A 246 O HOH A 347 1555 1555 3.37 SITE 1 AC1 4 SER A 66 ALA A 111 GLU A 113 VAL A 116 CRYST1 115.180 132.750 41.780 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008682 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007533 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023935 0.00000