HEADER OXIDOREDUCTASE 18-AUG-03 1Q7G TITLE HOMOSERINE DEHYDROGENASE IN COMPLEX WITH SUICIDE INHIBITOR COMPLEX TITLE 2 NAD-5-HYDROXY-4-OXONORVALINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMOSERINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HDH; COMPND 5 EC: 1.1.1.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: HOM6, YJR139C OR J2132; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.L.JACQUES,I.A.MIRZA,L.EJIM,K.KOTEVA,D.W.HUGHES,K.GREEN,R.KINACH, AUTHOR 2 J.F.HONEK,H.K.LAI,A.M.BERGHUIS,G.D.WRIGHT REVDAT 3 16-AUG-23 1Q7G 1 REMARK REVDAT 2 24-FEB-09 1Q7G 1 VERSN REVDAT 1 21-OCT-03 1Q7G 0 JRNL AUTH S.L.JACQUES,I.A.MIRZA,L.EJIM,K.KOTEVA,D.W.HUGHES,K.GREEN, JRNL AUTH 2 R.KINACH,J.F.HONEK,H.K.LAI,A.M.BERGHUIS,G.D.WRIGHT JRNL TITL ENZYME ASSISTED SUICIDE: MOLECULAR BASIS FOR THE ANTIFUNGAL JRNL TITL 2 ACTIVITY OF 5-HYDROXY-4-OXONORVALINE BY POTENT INHIBITION OF JRNL TITL 3 HOMOSERINE DEHYDROGENASE JRNL REF CHEM.BIOL. V. 10 989 2003 JRNL REFN ISSN 1074-5521 JRNL PMID 14583265 JRNL DOI 10.1016/J.CHEMBIOL.2003.09.015 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.43 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 125946.930 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.8 REMARK 3 NUMBER OF REFLECTIONS : 24083 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.306 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 2356 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 66.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2550 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 275 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.022 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 56 REMARK 3 SOLVENT ATOMS : 41 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.93000 REMARK 3 B22 (A**2) : 6.93000 REMARK 3 B33 (A**2) : -13.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.34 REMARK 3 ESD FROM SIGMAA (A) : 0.44 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.45 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.58 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.970 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.280 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.160 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.720 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.600 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.39 REMARK 3 BSOL : 37.93 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000020011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 218 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0722 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 99.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1EBF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM ACETATE, AMMONIUM SULFATE, PH REMARK 280 4.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 124.49300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.43150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.43150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 186.73950 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.43150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.43150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 62.24650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.43150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.43150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 186.73950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.43150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.43150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 62.24650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 124.49300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -27.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 331 C - N - CA ANGL. DEV. = 10.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 13 53.60 -118.27 REMARK 500 PHE A 50 32.25 75.65 REMARK 500 ASN A 54 42.79 -73.25 REMARK 500 VAL A 55 46.31 -101.76 REMARK 500 PRO A 86 151.90 -49.32 REMARK 500 ASN A 92 49.53 -105.50 REMARK 500 SER A 122 -135.99 -104.04 REMARK 500 HIS A 142 38.67 -143.99 REMARK 500 ALA A 148 -112.72 47.29 REMARK 500 PRO A 151 91.09 -69.71 REMARK 500 ILE A 152 -58.20 -129.74 REMARK 500 GLU A 170 134.31 -176.57 REMARK 500 ASP A 191 48.81 -99.75 REMARK 500 SER A 237 162.60 177.99 REMARK 500 PRO A 248 74.79 -34.19 REMARK 500 LYS A 249 -153.02 45.29 REMARK 500 PRO A 250 -112.63 -58.49 REMARK 500 GLU A 252 -75.51 -96.31 REMARK 500 LYS A 255 -148.17 -114.16 REMARK 500 ALA A 257 -102.66 -9.00 REMARK 500 SER A 265 33.30 -65.15 REMARK 500 PRO A 331 134.98 -33.29 REMARK 500 ALA A 341 -71.95 -44.52 REMARK 500 ALA B 41 -135.96 56.29 REMARK 500 PHE B 50 16.70 86.17 REMARK 500 ASP B 58 75.94 -174.62 REMARK 500 ALA B 65 2.12 -68.22 REMARK 500 LYS B 118 -74.24 -42.92 REMARK 500 SER B 122 -158.11 -121.34 REMARK 500 ASP B 123 150.62 -48.43 REMARK 500 ASN B 133 -8.07 -58.91 REMARK 500 HIS B 142 47.86 -146.24 REMARK 500 ALA B 144 -2.43 -57.68 REMARK 500 ALA B 148 -107.64 48.55 REMARK 500 PRO B 151 56.47 -67.85 REMARK 500 ILE B 152 -67.88 -93.75 REMARK 500 THR B 186 -169.25 -115.48 REMARK 500 PRO B 211 -18.56 -48.72 REMARK 500 GLU B 234 74.94 -52.28 REMARK 500 SER B 240 36.10 -82.69 REMARK 500 LYS B 269 -73.78 -27.66 REMARK 500 ASP B 270 -75.71 -46.14 REMARK 500 SER B 313 70.52 -116.78 REMARK 500 ASP B 318 154.56 -43.35 REMARK 500 TYR B 328 73.72 -106.42 REMARK 500 PRO B 331 150.17 -47.78 REMARK 500 VAL B 333 107.99 23.13 REMARK 500 ALA B 341 -70.36 -59.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 TWO POSSIBLE ADDUCTS WERE CONSTRUCTED DIFFERING IN REMARK 600 CHIRALITY AT THE HON C5 POSITION AND MODELED INTO REMARK 600 THE ACTIVE SITE. SUBSEQUENT ELECTRON DENSITY MAPS REMARK 600 AND MONITORING OF RFREE DID NOT INDICATE A CONVINCING REMARK 600 PREFERENCE FOR EITHER CONFIGURATION, AND THUS THE REMARK 600 CURRENT MODEL DESCRIBES THE CHIRALITY OF THE HON REMARK 600 C5 TO BE 50% S AND 50% R. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 500 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 143 O REMARK 620 2 GLU A 143 OE2 70.9 REMARK 620 3 VAL A 146 O 83.1 115.0 REMARK 620 4 LEU A 150 O 127.0 63.2 139.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 501 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 143 O REMARK 620 2 LEU B 150 O 143.9 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHO A 361 DBREF 1Q7G A 1 359 UNP P31116 DHOM_YEAST 1 359 DBREF 1Q7G B 1 359 UNP P31116 DHOM_YEAST 1 359 SEQRES 1 A 359 MET SER THR LYS VAL VAL ASN VAL ALA VAL ILE GLY ALA SEQRES 2 A 359 GLY VAL VAL GLY SER ALA PHE LEU ASP GLN LEU LEU ALA SEQRES 3 A 359 MET LYS SER THR ILE THR TYR ASN LEU VAL LEU LEU ALA SEQRES 4 A 359 GLU ALA GLU ARG SER LEU ILE SER LYS ASP PHE SER PRO SEQRES 5 A 359 LEU ASN VAL GLY SER ASP TRP LYS ALA ALA LEU ALA ALA SEQRES 6 A 359 SER THR THR LYS THR LEU PRO LEU ASP ASP LEU ILE ALA SEQRES 7 A 359 HIS LEU LYS THR SER PRO LYS PRO VAL ILE LEU VAL ASP SEQRES 8 A 359 ASN THR SER SER ALA TYR ILE ALA GLY PHE TYR THR LYS SEQRES 9 A 359 PHE VAL GLU ASN GLY ILE SER ILE ALA THR PRO ASN LYS SEQRES 10 A 359 LYS ALA PHE SER SER ASP LEU ALA THR TRP LYS ALA LEU SEQRES 11 A 359 PHE SER ASN LYS PRO THR ASN GLY PHE VAL TYR HIS GLU SEQRES 12 A 359 ALA THR VAL GLY ALA GLY LEU PRO ILE ILE SER PHE LEU SEQRES 13 A 359 ARG GLU ILE ILE GLN THR GLY ASP GLU VAL GLU LYS ILE SEQRES 14 A 359 GLU GLY ILE PHE SER GLY THR LEU SER TYR ILE PHE ASN SEQRES 15 A 359 GLU PHE SER THR SER GLN ALA ASN ASP VAL LYS PHE SER SEQRES 16 A 359 ASP VAL VAL LYS VAL ALA LYS LYS LEU GLY TYR THR GLU SEQRES 17 A 359 PRO ASP PRO ARG ASP ASP LEU ASN GLY LEU ASP VAL ALA SEQRES 18 A 359 ARG LYS VAL THR ILE VAL GLY ARG ILE SER GLY VAL GLU SEQRES 19 A 359 VAL GLU SER PRO THR SER PHE PRO VAL GLN SER LEU ILE SEQRES 20 A 359 PRO LYS PRO LEU GLU SER VAL LYS SER ALA ASP GLU PHE SEQRES 21 A 359 LEU GLU LYS LEU SER ASP TYR ASP LYS ASP LEU THR GLN SEQRES 22 A 359 LEU LYS LYS GLU ALA ALA THR GLU ASN LYS VAL LEU ARG SEQRES 23 A 359 PHE ILE GLY LYS VAL ASP VAL ALA THR LYS SER VAL SER SEQRES 24 A 359 VAL GLY ILE GLU LYS TYR ASP TYR SER HIS PRO PHE ALA SEQRES 25 A 359 SER LEU LYS GLY SER ASP ASN VAL ILE SER ILE LYS THR SEQRES 26 A 359 LYS ARG TYR THR ASN PRO VAL VAL ILE GLN GLY ALA GLY SEQRES 27 A 359 ALA GLY ALA ALA VAL THR ALA ALA GLY VAL LEU GLY ASP SEQRES 28 A 359 VAL ILE LYS ILE ALA GLN ARG LEU SEQRES 1 B 359 MET SER THR LYS VAL VAL ASN VAL ALA VAL ILE GLY ALA SEQRES 2 B 359 GLY VAL VAL GLY SER ALA PHE LEU ASP GLN LEU LEU ALA SEQRES 3 B 359 MET LYS SER THR ILE THR TYR ASN LEU VAL LEU LEU ALA SEQRES 4 B 359 GLU ALA GLU ARG SER LEU ILE SER LYS ASP PHE SER PRO SEQRES 5 B 359 LEU ASN VAL GLY SER ASP TRP LYS ALA ALA LEU ALA ALA SEQRES 6 B 359 SER THR THR LYS THR LEU PRO LEU ASP ASP LEU ILE ALA SEQRES 7 B 359 HIS LEU LYS THR SER PRO LYS PRO VAL ILE LEU VAL ASP SEQRES 8 B 359 ASN THR SER SER ALA TYR ILE ALA GLY PHE TYR THR LYS SEQRES 9 B 359 PHE VAL GLU ASN GLY ILE SER ILE ALA THR PRO ASN LYS SEQRES 10 B 359 LYS ALA PHE SER SER ASP LEU ALA THR TRP LYS ALA LEU SEQRES 11 B 359 PHE SER ASN LYS PRO THR ASN GLY PHE VAL TYR HIS GLU SEQRES 12 B 359 ALA THR VAL GLY ALA GLY LEU PRO ILE ILE SER PHE LEU SEQRES 13 B 359 ARG GLU ILE ILE GLN THR GLY ASP GLU VAL GLU LYS ILE SEQRES 14 B 359 GLU GLY ILE PHE SER GLY THR LEU SER TYR ILE PHE ASN SEQRES 15 B 359 GLU PHE SER THR SER GLN ALA ASN ASP VAL LYS PHE SER SEQRES 16 B 359 ASP VAL VAL LYS VAL ALA LYS LYS LEU GLY TYR THR GLU SEQRES 17 B 359 PRO ASP PRO ARG ASP ASP LEU ASN GLY LEU ASP VAL ALA SEQRES 18 B 359 ARG LYS VAL THR ILE VAL GLY ARG ILE SER GLY VAL GLU SEQRES 19 B 359 VAL GLU SER PRO THR SER PHE PRO VAL GLN SER LEU ILE SEQRES 20 B 359 PRO LYS PRO LEU GLU SER VAL LYS SER ALA ASP GLU PHE SEQRES 21 B 359 LEU GLU LYS LEU SER ASP TYR ASP LYS ASP LEU THR GLN SEQRES 22 B 359 LEU LYS LYS GLU ALA ALA THR GLU ASN LYS VAL LEU ARG SEQRES 23 B 359 PHE ILE GLY LYS VAL ASP VAL ALA THR LYS SER VAL SER SEQRES 24 B 359 VAL GLY ILE GLU LYS TYR ASP TYR SER HIS PRO PHE ALA SEQRES 25 B 359 SER LEU LYS GLY SER ASP ASN VAL ILE SER ILE LYS THR SEQRES 26 B 359 LYS ARG TYR THR ASN PRO VAL VAL ILE GLN GLY ALA GLY SEQRES 27 B 359 ALA GLY ALA ALA VAL THR ALA ALA GLY VAL LEU GLY ASP SEQRES 28 B 359 VAL ILE LYS ILE ALA GLN ARG LEU HET NA A 500 1 HET NHO A 361 108 HET NA B 501 1 HETNAM NA SODIUM ION HETNAM NHO NICOTINAMIDE-ADENINE-DINUCLEOTIDE-5-HYDROXY-4- HETNAM 2 NHO OXONORVALINE FORMUL 3 NA 2(NA 1+) FORMUL 4 NHO C26 H35 N8 O18 P2 1+ FORMUL 6 HOH *41(H2 O) HELIX 1 1 GLY A 14 ALA A 26 1 13 HELIX 2 2 ASP A 58 ALA A 65 1 8 HELIX 3 3 PRO A 72 LYS A 81 1 10 HELIX 4 4 SER A 95 ASN A 108 1 14 HELIX 5 5 LYS A 118 SER A 122 5 5 HELIX 6 6 ASP A 123 SER A 132 1 10 HELIX 7 7 HIS A 142 VAL A 146 5 5 HELIX 8 8 ILE A 152 GLY A 163 1 12 HELIX 9 9 SER A 174 SER A 185 1 12 HELIX 10 10 LYS A 193 LEU A 204 1 12 HELIX 11 11 PRO A 211 ASN A 216 1 6 HELIX 12 12 GLY A 217 GLY A 232 1 16 HELIX 13 13 SER A 256 SER A 265 1 10 HELIX 14 14 TYR A 267 GLU A 281 1 15 HELIX 15 15 HIS A 309 LEU A 314 5 6 HELIX 16 16 GLY A 340 LEU A 359 1 20 HELIX 17 17 GLY B 14 MET B 27 1 14 HELIX 18 18 ASP B 58 ALA B 65 1 8 HELIX 19 19 PRO B 72 LYS B 81 1 10 HELIX 20 20 SER B 95 GLY B 100 1 6 HELIX 21 21 PHE B 101 ASN B 108 1 8 HELIX 22 22 LYS B 118 SER B 122 5 5 HELIX 23 23 ASP B 123 ALA B 129 1 7 HELIX 24 24 HIS B 142 VAL B 146 5 5 HELIX 25 25 ILE B 152 GLY B 163 1 12 HELIX 26 26 SER B 174 SER B 185 1 12 HELIX 27 27 LYS B 193 LEU B 204 1 12 HELIX 28 28 PRO B 211 ASN B 216 1 6 HELIX 29 29 GLY B 217 SER B 231 1 15 HELIX 30 30 PRO B 248 GLU B 252 5 5 HELIX 31 31 SER B 256 SER B 265 1 10 HELIX 32 32 ASP B 268 GLU B 281 1 14 HELIX 33 33 HIS B 309 SER B 313 5 5 HELIX 34 34 GLY B 340 LEU B 359 1 20 SHEET 1 A 6 SER A 44 ILE A 46 0 SHEET 2 A 6 THR A 32 ALA A 39 -1 N LEU A 38 O LEU A 45 SHEET 3 A 6 VAL A 5 ILE A 11 1 N VAL A 6 O ASN A 34 SHEET 4 A 6 VAL A 87 ASP A 91 1 O VAL A 90 N ALA A 9 SHEET 5 A 6 SER A 111 ALA A 113 1 O SER A 111 N LEU A 89 SHEET 6 A 6 VAL A 140 TYR A 141 1 O TYR A 141 N ILE A 112 SHEET 1 B 3 SER A 297 VAL A 298 0 SHEET 2 B 3 LYS A 283 ASP A 292 -1 N ASP A 292 O SER A 297 SHEET 3 B 3 GLY A 301 ASP A 306 -1 O GLY A 301 N ILE A 288 SHEET 1 C10 SER A 297 VAL A 298 0 SHEET 2 C10 LYS A 283 ASP A 292 -1 N ASP A 292 O SER A 297 SHEET 3 C10 VAL A 166 ILE A 172 -1 N ILE A 169 O VAL A 291 SHEET 4 C10 ASN A 319 THR A 325 -1 O LYS A 324 N LYS A 168 SHEET 5 C10 VAL A 332 GLY A 336 -1 O GLY A 336 N ASN A 319 SHEET 6 C10 ILE B 334 GLY B 336 -1 O GLN B 335 N VAL A 333 SHEET 7 C10 ASN B 319 THR B 325 -1 N ASN B 319 O GLY B 336 SHEET 8 C10 VAL B 166 ILE B 172 -1 N GLU B 170 O SER B 322 SHEET 9 C10 LYS B 283 ASP B 292 -1 O VAL B 291 N ILE B 169 SHEET 10 C10 SER B 297 ASP B 306 -1 O SER B 297 N ASP B 292 SHEET 1 D 7 THR B 68 LYS B 69 0 SHEET 2 D 7 ARG B 43 ILE B 46 -1 N SER B 44 O THR B 68 SHEET 3 D 7 THR B 32 GLU B 40 -1 N LEU B 38 O LEU B 45 SHEET 4 D 7 VAL B 5 ILE B 11 1 N VAL B 8 O ASN B 34 SHEET 5 D 7 VAL B 87 ASP B 91 1 O VAL B 90 N ALA B 9 SHEET 6 D 7 SER B 111 ALA B 113 1 O SER B 111 N LEU B 89 SHEET 7 D 7 VAL B 140 TYR B 141 1 O TYR B 141 N ILE B 112 LINK O GLU A 143 NA NA A 500 1555 1555 2.84 LINK OE2 GLU A 143 NA NA A 500 1555 1555 2.71 LINK O VAL A 146 NA NA A 500 1555 1555 2.73 LINK O LEU A 150 NA NA A 500 1555 1555 2.68 LINK O GLU B 143 NA NA B 501 1555 1555 2.78 LINK O LEU B 150 NA NA B 501 1555 1555 2.95 SITE 1 AC1 5 GLU A 143 VAL A 146 GLY A 147 ALA A 148 SITE 2 AC1 5 LEU A 150 SITE 1 AC2 5 GLU B 143 VAL B 146 GLY B 147 ALA B 148 SITE 2 AC2 5 LEU B 150 SITE 1 AC3 22 ILE A 11 GLY A 14 VAL A 15 VAL A 16 SITE 2 AC3 22 GLU A 40 ALA A 41 ASN A 92 THR A 93 SITE 3 AC3 22 SER A 94 ILE A 98 PRO A 115 LYS A 117 SITE 4 AC3 22 ALA A 144 SER A 174 GLY A 175 LYS A 223 SITE 5 AC3 22 GLY A 338 ALA A 339 GLY A 340 THR A 344 SITE 6 AC3 22 HOH A 501 HOH A 502 CRYST1 80.863 80.863 248.986 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012367 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012367 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004016 0.00000