data_1Q8N # _entry.id 1Q8N # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q8N pdb_00001q8n 10.2210/pdb1q8n/pdb RCSB RCSB020054 ? ? WWPDB D_1000020054 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1F1T _pdbx_database_related.details 'A variant RNA complexed with Tetramethyl-Rosamine' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q8N _pdbx_database_status.recvd_initial_deposition_date 2003-08-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Flinders, J.' 1 'DeFina, S.C.' 2 'Brackett, D.M.' 3 'Baugh, C.' 4 'Wilson, C.' 5 'Dieckmann, T.' 6 # _citation.id primary _citation.title 'Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex.' _citation.journal_abbrev Chembiochem _citation.journal_volume 5 _citation.page_first 62 _citation.page_last 72 _citation.year 2004 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1439-4227 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14695514 _citation.pdbx_database_id_DOI 10.1002/cbic.200300701 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Flinders, J.' 1 ? primary 'DeFina, S.C.' 2 ? primary 'Brackett, D.M.' 3 ? primary 'Baugh, C.' 4 ? primary 'Wilson, C.' 5 ? primary 'Dieckmann, T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'RNA Aptamer' 12317.421 1 ? ? ? ? 2 non-polymer syn 'MALACHITE GREEN' 329.458 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGAUCCCGACUGGCGAGAGCCAGGUAACGAAUGGAUCC _entity_poly.pdbx_seq_one_letter_code_can GGAUCCCGACUGGCGAGAGCCAGGUAACGAAUGGAUCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 U n 1 5 C n 1 6 C n 1 7 C n 1 8 G n 1 9 A n 1 10 C n 1 11 U n 1 12 G n 1 13 G n 1 14 C n 1 15 G n 1 16 A n 1 17 G n 1 18 A n 1 19 G n 1 20 C n 1 21 C n 1 22 A n 1 23 G n 1 24 G n 1 25 U n 1 26 A n 1 27 A n 1 28 C n 1 29 G n 1 30 A n 1 31 A n 1 32 U n 1 33 G n 1 34 G n 1 35 A n 1 36 U n 1 37 C n 1 38 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence was synthesized in vitro and does not occur naturally.' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1Q8N _struct_ref.pdbx_db_accession 1Q8N _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Q8N _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 38 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1Q8N _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 38 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 38 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MGR non-polymer . 'MALACHITE GREEN' ? 'C23 H25 N2 1' 329.458 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 2 2 '2D NOESY' 2 2 2 '2D TOCSY' 3 2 2 DQF-COSY 4 4 2 3D_13C-separated_NOESY 5 5 1 '2D HMQC' 6 4 2 HCNCH 7 3 1 '2D NOESY' # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 274 ambient 5.8 '10mM KCl' ? K 2 298 ambient 5.8 '10mM KCl' ? K 3 274 ambient 5.8 '10mM KCl' ? K 4 298 ambient 5.8 '10mM KCl' ? K 5 274 ambient 5.8 '10mM KCl' ? K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '0.2mM RNA Aptamer, 10mM phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' 2 '1.5mM RNA Aptamer, 10mM phosphate buffer, 100% D2O' '100% D2O' 3 '1.5mM RNA Aptamer, 10mM phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' 4 '1mM RNA Aptamer U-15N,13C, 10mM phosphate buffer, 100% D2O' '100% D2O' 5 '1mM RNA Aptamer U-15N,13C, 10mM phosphate buffer, 90% H2O, 10% D2O' '90% H2O/10% D2O' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type ? _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1Q8N _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ;The structure was based on 423 NOE constraints (148 intranucleotide, 119 sequential, 66 medium to long range, and 90 RNA to ligand NOEs) and 219 dihedral angle restraints. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1Q8N _pdbx_nmr_details.text 'This structure was determined with the aid of the crystal structure of a similar RNA aptamer.' # _pdbx_nmr_ensemble.entry_id 1Q8N _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 25 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1Q8N _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal XwinNMR 2.6 collection Bruker 1 CNS 1.1 'structure solution' ;A.T. Brunger, P.D. Adams, G.M. Clore, W.L. Delano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, R.J. Read, L.M.R ice, T. Simonson, G.L. Warren ; 2 XEASY 1.3.13 'data analysis' 'C. Bartels, T.H. Xia, M. Billeter, P. Gntert and K. Wthrich' 3 CNS 1.1 refinement ;A.T. Brunger, P.D. Adams, G.M. Clore, W.L. Delano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, N.S. Pannu, R.J. Read, L.M.R ice, T. Simonson, G.L. Warren ; 4 # _exptl.entry_id 1Q8N _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _struct.entry_id 1Q8N _struct.title 'Solution Structure of the Malachite Green RNA Binding Aptamer' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q8N _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'rna aptamer, malachite green, base triple, base quadruple, rna ligand interactions, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 38 N3 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 38 O2 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 38 N4 ? ? A G 1 A C 38 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 37 N3 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 37 O2 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 37 N4 ? ? A G 2 A C 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 36 N3 ? ? A A 3 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 36 O4 ? ? A A 3 A U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A U 4 N3 ? ? ? 1_555 A A 35 N1 ? ? A U 4 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 4 O4 ? ? ? 1_555 A A 35 N6 ? ? A U 4 A A 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 34 N1 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 34 O6 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 34 N2 ? ? A C 5 A G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 6 N3 ? ? ? 1_555 A G 33 N1 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 6 N4 ? ? ? 1_555 A G 33 O6 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 6 O2 ? ? ? 1_555 A G 33 N2 ? ? A C 6 A G 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A C 7 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 7 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 7 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 7 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 7 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 7 A G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 8 N1 ? ? ? 1_555 A C 28 N3 ? ? A G 8 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 8 N2 ? ? ? 1_555 A C 28 O2 ? ? A G 8 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 8 O6 ? ? ? 1_555 A C 28 N4 ? ? A G 8 A C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 10 N3 ? ? ? 1_555 A G 23 N1 ? ? A C 10 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 10 N4 ? ? ? 1_555 A G 23 O6 ? ? A C 10 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A C 10 O2 ? ? ? 1_555 A G 23 N2 ? ? A C 10 A G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A C 10 O2 ? ? ? 1_555 A C 28 N4 ? ? A C 10 A C 28 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? ? hydrog27 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 22 N1 ? ? A U 11 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 22 N6 ? ? A U 11 A A 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 11 O2 ? ? ? 1_555 A A 26 N6 ? ? A U 11 A A 26 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? ? hydrog30 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 21 N3 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 21 O2 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 21 N4 ? ? A G 12 A C 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 13 N1 ? ? ? 1_555 A C 20 N3 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 13 N2 ? ? ? 1_555 A C 20 O2 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 13 O6 ? ? ? 1_555 A C 20 N4 ? ? A G 13 A C 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 14 N3 ? ? ? 1_555 A G 19 N1 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A C 14 N4 ? ? ? 1_555 A G 19 O6 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 14 O2 ? ? ? 1_555 A G 19 N2 ? ? A C 14 A G 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 15 N2 ? ? ? 1_555 A G 17 N7 ? ? A G 15 A G 17 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog40 hydrog ? ? A G 15 N2 ? ? ? 1_555 A A 18 N7 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog41 hydrog ? ? A G 15 N3 ? ? ? 1_555 A A 18 N6 ? ? A G 15 A A 18 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog42 hydrog ? ? A G 23 N2 ? ? ? 1_555 A A 27 N1 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog43 hydrog ? ? A G 23 N3 ? ? ? 1_555 A A 27 N6 ? ? A G 23 A A 27 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog44 hydrog ? ? A G 24 N1 ? ? ? 1_555 A G 29 N7 ? ? A G 24 A G 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog45 hydrog ? ? A G 24 N2 ? ? ? 1_555 A G 29 O6 ? ? A G 24 A G 29 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog46 hydrog ? ? A G 29 N2 ? ? ? 1_555 A A 31 N1 ? ? A G 29 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog47 hydrog ? ? A G 29 N3 ? ? ? 1_555 A A 31 N6 ? ? A G 29 A A 31 1_555 ? ? ? ? ? ? TYPE_10_PAIR ? ? ? hydrog48 hydrog ? ? A G 29 N1 ? ? ? 1_555 A G 33 O6 ? ? A G 29 A G 33 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id MGR _struct_site.pdbx_auth_seq_id 39 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 6 _struct_site.details 'BINDING SITE FOR RESIDUE MGR A 39' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 C A 7 ? C A 7 . ? 1_555 ? 2 AC1 6 G A 8 ? G A 8 . ? 1_555 ? 3 AC1 6 G A 24 ? G A 24 . ? 1_555 ? 4 AC1 6 C A 28 ? C A 28 . ? 1_555 ? 5 AC1 6 G A 29 ? G A 29 . ? 1_555 ? 6 AC1 6 A A 30 ? A A 30 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Q8N _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Q8N _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 U 4 4 4 U U A . n A 1 5 C 5 5 5 C C A . n A 1 6 C 6 6 6 C C A . n A 1 7 C 7 7 7 C C A . n A 1 8 G 8 8 8 G G A . n A 1 9 A 9 9 9 A A A . n A 1 10 C 10 10 10 C C A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 G 13 13 13 G G A . n A 1 14 C 14 14 14 C C A . n A 1 15 G 15 15 15 G G A . n A 1 16 A 16 16 16 A A A . n A 1 17 G 17 17 17 G G A . n A 1 18 A 18 18 18 A A A . n A 1 19 G 19 19 19 G G A . n A 1 20 C 20 20 20 C C A . n A 1 21 C 21 21 21 C C A . n A 1 22 A 22 22 22 A A A . n A 1 23 G 23 23 23 G G A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 A 26 26 26 A A A . n A 1 27 A 27 27 27 A A A . n A 1 28 C 28 28 28 C C A . n A 1 29 G 29 29 29 G G A . n A 1 30 A 30 30 30 A A A . n A 1 31 A 31 31 31 A A A . n A 1 32 U 32 32 32 U U A . n A 1 33 G 33 33 33 G G A . n A 1 34 G 34 34 34 G G A . n A 1 35 A 35 35 35 A A A . n A 1 36 U 36 36 36 U U A . n A 1 37 C 37 37 37 C C A . n A 1 38 C 38 38 38 C C A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id MGR _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 39 _pdbx_nonpoly_scheme.auth_seq_num 39 _pdbx_nonpoly_scheme.pdb_mon_id MGR _pdbx_nonpoly_scheme.auth_mon_id MGR _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-03-23 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-03-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 H22 A G 23 ? ? H61 A A 27 ? ? 0.98 2 1 "HO2'" A U 11 ? ? N1 A A 26 ? ? 1.32 3 1 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.45 4 1 H22 A G 29 ? ? N1 A A 31 ? ? 1.49 5 1 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 6 1 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 7 1 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.58 8 1 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 9 2 H22 A G 23 ? ? H61 A A 27 ? ? 0.99 10 2 "HO2'" A U 11 ? ? N1 A A 26 ? ? 1.39 11 2 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.46 12 2 H22 A G 29 ? ? N1 A A 31 ? ? 1.50 13 2 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 14 2 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 15 2 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 16 3 H22 A G 23 ? ? H61 A A 27 ? ? 0.97 17 3 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.40 18 3 H22 A G 29 ? ? N1 A A 31 ? ? 1.50 19 3 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 20 3 H22 A G 23 ? ? N6 A A 27 ? ? 1.56 21 3 "O2'" A A 18 ? ? "O5'" A G 19 ? ? 1.80 22 3 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 23 4 H22 A G 23 ? ? H61 A A 27 ? ? 0.98 24 4 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.38 25 4 H22 A G 29 ? ? N1 A A 31 ? ? 1.44 26 4 H1 A G 2 ? ? O2 A C 37 ? ? 1.52 27 4 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 28 4 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 29 5 H22 A G 23 ? ? H61 A A 27 ? ? 0.97 30 5 "HO2'" A A 18 ? ? "O5'" A G 19 ? ? 1.30 31 5 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.37 32 5 H22 A G 29 ? ? N1 A A 31 ? ? 1.49 33 5 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 34 5 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 35 5 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 36 6 H22 A G 23 ? ? H61 A A 27 ? ? 0.97 37 6 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.45 38 6 H22 A G 29 ? ? N1 A A 31 ? ? 1.48 39 6 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 40 6 H22 A G 23 ? ? N6 A A 27 ? ? 1.57 41 6 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 42 7 H22 A G 23 ? ? H61 A A 27 ? ? 0.97 43 7 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.45 44 7 H22 A G 29 ? ? N1 A A 31 ? ? 1.46 45 7 H1 A G 2 ? ? O2 A C 37 ? ? 1.52 46 7 H22 A G 23 ? ? N6 A A 27 ? ? 1.57 47 7 "O2'" A A 18 ? ? "O5'" A G 19 ? ? 1.80 48 7 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 49 8 H22 A G 23 ? ? H61 A A 27 ? ? 0.98 50 8 "HO2'" A A 18 ? ? "O5'" A G 19 ? ? 1.44 51 8 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.45 52 8 H22 A G 29 ? ? N1 A A 31 ? ? 1.49 53 8 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 54 8 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 55 8 O6 A G 2 ? ? N3 A C 37 ? ? 2.18 56 8 "O2'" A U 11 ? ? N1 A A 26 ? ? 2.19 57 9 H22 A G 23 ? ? H61 A A 27 ? ? 1.04 58 9 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.42 59 9 H22 A G 29 ? ? N1 A A 31 ? ? 1.47 60 9 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 61 9 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 62 9 "O2'" A U 11 ? ? N1 A A 26 ? ? 2.19 63 10 H22 A G 23 ? ? H61 A A 27 ? ? 0.97 64 10 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.46 65 10 H22 A G 29 ? ? N1 A A 31 ? ? 1.46 66 10 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 67 10 H22 A G 23 ? ? N6 A A 27 ? ? 1.57 68 10 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 69 11 H22 A G 23 ? ? H61 A A 27 ? ? 1.00 70 11 "HO2'" A A 18 ? ? "O5'" A G 19 ? ? 1.28 71 11 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.43 72 11 H22 A G 29 ? ? N1 A A 31 ? ? 1.45 73 11 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 74 11 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 75 12 H22 A G 23 ? ? H61 A A 27 ? ? 0.99 76 12 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.40 77 12 H22 A G 29 ? ? N1 A A 31 ? ? 1.48 78 12 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 79 12 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.56 80 12 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 81 12 "O2'" A A 18 ? ? "O5'" A G 19 ? ? 1.80 82 12 O6 A G 2 ? ? N3 A C 37 ? ? 2.18 83 13 H22 A G 23 ? ? H61 A A 27 ? ? 1.03 84 13 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.41 85 13 H22 A G 29 ? ? N1 A A 31 ? ? 1.44 86 13 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 87 13 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 88 14 H22 A G 23 ? ? H61 A A 27 ? ? 1.12 89 14 H22 A G 29 ? ? N1 A A 31 ? ? 1.48 90 14 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 91 14 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 92 15 H22 A G 23 ? ? H61 A A 27 ? ? 0.98 93 15 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.41 94 15 H22 A G 29 ? ? N1 A A 31 ? ? 1.49 95 15 H1 A G 2 ? ? O2 A C 37 ? ? 1.55 96 15 H22 A G 23 ? ? N6 A A 27 ? ? 1.57 97 15 O6 A G 2 ? ? N3 A C 37 ? ? 2.18 98 16 H22 A G 23 ? ? H61 A A 27 ? ? 1.01 99 16 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.39 100 16 H22 A G 29 ? ? N1 A A 31 ? ? 1.44 101 16 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 102 16 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.58 103 16 "O2'" A U 11 ? ? N1 A A 26 ? ? 2.17 104 16 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 105 17 H22 A G 23 ? ? H61 A A 27 ? ? 0.99 106 17 "HO2'" A A 18 ? ? "O5'" A G 19 ? ? 1.30 107 17 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.41 108 17 H22 A G 29 ? ? N1 A A 31 ? ? 1.49 109 17 H1 A G 2 ? ? O2 A C 37 ? ? 1.55 110 17 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 111 17 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.58 112 17 O6 A G 2 ? ? N3 A C 37 ? ? 2.18 113 17 "O4'" A G 8 ? ? C23 A MGR 39 ? ? 2.19 114 18 H22 A G 23 ? ? H61 A A 27 ? ? 1.06 115 18 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.40 116 18 H22 A G 29 ? ? N1 A A 31 ? ? 1.45 117 18 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 118 18 "O2'" A A 18 ? ? H8 A G 19 ? ? 1.58 119 18 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 120 19 H22 A G 23 ? ? H61 A A 27 ? ? 1.00 121 19 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.40 122 19 H22 A G 29 ? ? N1 A A 31 ? ? 1.47 123 19 H1 A G 2 ? ? O2 A C 37 ? ? 1.52 124 19 H22 A G 23 ? ? N6 A A 27 ? ? 1.59 125 19 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 126 20 H22 A G 23 ? ? H61 A A 27 ? ? 1.00 127 20 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.47 128 20 H22 A G 29 ? ? N1 A A 31 ? ? 1.48 129 20 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 130 20 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 131 20 "O3'" A G 8 ? ? H8 A A 9 ? ? 1.58 132 20 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 133 21 H22 A G 23 ? ? H61 A A 27 ? ? 1.05 134 21 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.42 135 21 H22 A G 29 ? ? N1 A A 31 ? ? 1.43 136 21 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 137 21 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 138 21 "O2'" A U 11 ? ? N1 A A 26 ? ? 2.18 139 22 H22 A G 23 ? ? H61 A A 27 ? ? 0.98 140 22 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.40 141 22 H22 A G 29 ? ? N1 A A 31 ? ? 1.50 142 22 H1 A G 2 ? ? O2 A C 37 ? ? 1.54 143 22 H22 A G 23 ? ? N6 A A 27 ? ? 1.58 144 22 O6 A G 2 ? ? N3 A C 37 ? ? 2.18 145 23 H22 A G 23 ? ? H61 A A 27 ? ? 1.03 146 23 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.43 147 23 H22 A G 29 ? ? N1 A A 31 ? ? 1.47 148 23 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 149 23 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.57 150 23 "O3'" A G 8 ? ? H8 A A 9 ? ? 1.59 151 23 O6 A G 2 ? ? N3 A C 37 ? ? 2.17 152 23 "O2'" A U 11 ? ? N1 A A 26 ? ? 2.17 153 24 H22 A G 23 ? ? H61 A A 27 ? ? 0.99 154 24 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.42 155 24 H22 A G 29 ? ? N1 A A 31 ? ? 1.45 156 24 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 157 24 H22 A G 23 ? ? N6 A A 27 ? ? 1.59 158 24 "O2'" A A 18 ? ? "O5'" A G 19 ? ? 1.80 159 24 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 160 25 H22 A G 23 ? ? H61 A A 27 ? ? 1.05 161 25 H22 A G 29 ? ? N1 A A 31 ? ? 1.47 162 25 "H2'" A A 26 ? ? "O4'" A A 27 ? ? 1.51 163 25 H1 A G 2 ? ? O2 A C 37 ? ? 1.53 164 25 "O2'" A A 31 ? ? H5 A U 32 ? ? 1.58 165 25 O6 A G 2 ? ? N3 A C 37 ? ? 2.16 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 4 ? ? 0.058 'SIDE CHAIN' 2 1 G A 29 ? ? 0.058 'SIDE CHAIN' 3 2 G A 29 ? ? 0.058 'SIDE CHAIN' 4 3 G A 24 ? ? 0.050 'SIDE CHAIN' 5 4 G A 29 ? ? 0.057 'SIDE CHAIN' 6 5 G A 29 ? ? 0.056 'SIDE CHAIN' 7 6 G A 29 ? ? 0.057 'SIDE CHAIN' 8 7 G A 29 ? ? 0.056 'SIDE CHAIN' 9 8 U A 4 ? ? 0.058 'SIDE CHAIN' 10 8 G A 29 ? ? 0.055 'SIDE CHAIN' 11 9 U A 4 ? ? 0.058 'SIDE CHAIN' 12 9 G A 29 ? ? 0.060 'SIDE CHAIN' 13 10 G A 24 ? ? 0.052 'SIDE CHAIN' 14 10 G A 29 ? ? 0.055 'SIDE CHAIN' 15 11 U A 4 ? ? 0.059 'SIDE CHAIN' 16 11 G A 29 ? ? 0.057 'SIDE CHAIN' 17 12 G A 29 ? ? 0.056 'SIDE CHAIN' 18 13 G A 24 ? ? 0.053 'SIDE CHAIN' 19 13 G A 29 ? ? 0.055 'SIDE CHAIN' 20 14 G A 29 ? ? 0.057 'SIDE CHAIN' 21 15 G A 24 ? ? 0.049 'SIDE CHAIN' 22 16 U A 4 ? ? 0.058 'SIDE CHAIN' 23 16 G A 24 ? ? 0.052 'SIDE CHAIN' 24 16 G A 29 ? ? 0.055 'SIDE CHAIN' 25 17 G A 24 ? ? 0.051 'SIDE CHAIN' 26 17 G A 29 ? ? 0.055 'SIDE CHAIN' 27 18 G A 24 ? ? 0.053 'SIDE CHAIN' 28 18 G A 29 ? ? 0.058 'SIDE CHAIN' 29 19 U A 4 ? ? 0.058 'SIDE CHAIN' 30 19 G A 24 ? ? 0.052 'SIDE CHAIN' 31 19 G A 29 ? ? 0.054 'SIDE CHAIN' 32 20 G A 24 ? ? 0.057 'SIDE CHAIN' 33 21 G A 29 ? ? 0.059 'SIDE CHAIN' 34 22 G A 24 ? ? 0.052 'SIDE CHAIN' 35 22 G A 29 ? ? 0.055 'SIDE CHAIN' 36 23 U A 4 ? ? 0.060 'SIDE CHAIN' 37 23 G A 29 ? ? 0.060 'SIDE CHAIN' 38 24 G A 24 ? ? 0.053 'SIDE CHAIN' 39 25 G A 29 ? ? 0.057 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1Q8N 'double helix' 1Q8N 'a-form double helix' 1Q8N 'bulge loop' 1Q8N 'mismatched base pair' 1Q8N 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 38 1_555 0.562 -0.095 0.200 -1.093 -3.200 -0.631 1 A_G1:C38_A A 1 ? A 38 ? 19 1 1 A G 2 1_555 A C 37 1_555 -1.304 -1.247 0.786 8.360 -11.653 -11.834 2 A_G2:C37_A A 2 ? A 37 ? 19 1 1 A A 3 1_555 A U 36 1_555 1.310 -0.256 -0.292 5.095 -21.117 4.648 3 A_A3:U36_A A 3 ? A 36 ? 20 1 1 A U 4 1_555 A A 35 1_555 -1.179 -0.090 -0.260 -17.077 -24.400 -4.310 4 A_U4:A35_A A 4 ? A 35 ? 20 1 1 A C 5 1_555 A G 34 1_555 -0.831 -0.161 0.142 -3.899 -5.317 5.279 5 A_C5:G34_A A 5 ? A 34 ? 19 1 1 A C 6 1_555 A G 33 1_555 -0.628 -0.089 -0.149 -6.667 -4.244 2.266 6 A_C6:G33_A A 6 ? A 33 ? 19 1 1 A C 7 1_555 A G 29 1_555 1.110 -0.629 0.091 12.175 4.532 -3.736 7 A_C7:G29_A A 7 ? A 29 ? 19 1 1 A G 8 1_555 A C 28 1_555 -0.522 -0.131 -0.166 -4.417 12.771 0.687 8 A_G8:C28_A A 8 ? A 28 ? 19 1 1 A C 10 1_555 A G 23 1_555 -0.604 -0.024 -0.002 -1.903 -3.889 -3.931 9 A_C10:G23_A A 10 ? A 23 ? 19 1 1 A U 11 1_555 A A 22 1_555 0.874 -0.356 0.182 -5.819 -7.755 -2.222 10 A_U11:A22_A A 11 ? A 22 ? 20 1 1 A G 12 1_555 A C 21 1_555 -0.905 -0.403 0.132 4.808 -8.859 -0.895 11 A_G12:C21_A A 12 ? A 21 ? 19 1 1 A G 13 1_555 A C 20 1_555 -0.290 -0.102 0.025 -2.823 -7.276 -2.076 12 A_G13:C20_A A 13 ? A 20 ? 19 1 1 A C 14 1_555 A G 19 1_555 -0.527 -0.069 0.002 -0.178 -4.098 0.247 13 A_C14:G19_A A 14 ? A 19 ? 19 1 1 A G 15 1_555 A A 18 1_555 5.553 -2.576 1.421 7.621 16.909 -12.431 14 A_G15:A18_A A 15 ? A 18 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 38 1_555 A G 2 1_555 A C 37 1_555 -0.340 -0.629 3.542 -2.500 18.616 25.310 -4.770 0.142 2.525 36.721 4.932 31.426 1 AA_G1G2:C37C38_AA A 1 ? A 38 ? A 2 ? A 37 ? 1 A G 2 1_555 A C 37 1_555 A A 3 1_555 A U 36 1_555 0.861 0.372 3.412 10.094 32.796 42.165 -1.910 -0.236 3.080 38.840 -11.954 53.865 2 AA_G2A3:U36C37_AA A 2 ? A 37 ? A 3 ? A 36 ? 1 A A 3 1_555 A U 36 1_555 A U 4 1_555 A A 35 1_555 -0.630 -0.182 4.076 -2.464 28.287 18.693 -6.000 0.585 2.166 57.085 4.973 33.889 3 AA_A3U4:A35U36_AA A 3 ? A 36 ? A 4 ? A 35 ? 1 A U 4 1_555 A A 35 1_555 A C 5 1_555 A G 34 1_555 0.603 0.914 2.841 -6.603 19.111 29.346 -1.128 -1.897 2.732 33.216 11.477 35.511 4 AA_U4C5:G34A35_AA A 4 ? A 35 ? A 5 ? A 34 ? 1 A C 5 1_555 A G 34 1_555 A C 6 1_555 A G 33 1_555 0.276 0.268 4.115 -0.685 21.631 32.728 -2.973 -0.520 3.607 34.136 1.082 39.072 5 AA_C5C6:G33G34_AA A 5 ? A 34 ? A 6 ? A 33 ? 1 A C 6 1_555 A G 33 1_555 A C 7 1_555 A G 29 1_555 2.779 1.549 2.386 6.188 13.232 56.378 1.017 -2.592 2.918 13.751 -6.431 58.089 6 AA_C6C7:G29G33_AA A 6 ? A 33 ? A 7 ? A 29 ? 1 A G 8 1_555 A C 28 1_555 A C 10 1_555 A G 23 1_555 3.043 -0.647 2.286 8.462 12.594 86.007 -0.670 -2.075 2.426 9.172 -6.162 87.078 7 AA_G8C10:G23C28_AA A 8 ? A 28 ? A 10 ? A 23 ? 1 A C 10 1_555 A G 23 1_555 A U 11 1_555 A A 22 1_555 -0.983 -0.588 3.512 -2.968 9.418 29.770 -2.977 1.225 3.260 17.729 5.587 31.330 8 AA_C10U11:A22G23_AA A 10 ? A 23 ? A 11 ? A 22 ? 1 A U 11 1_555 A A 22 1_555 A G 12 1_555 A C 21 1_555 -0.132 -1.131 2.695 -4.496 27.148 25.713 -4.228 -0.203 1.076 47.098 7.800 37.491 9 AA_U11G12:C21A22_AA A 11 ? A 22 ? A 12 ? A 21 ? 1 A G 12 1_555 A C 21 1_555 A G 13 1_555 A C 20 1_555 -0.937 -0.937 3.567 -1.340 30.168 32.510 -4.108 1.121 2.064 43.903 1.950 44.092 10 AA_G12G13:C20C21_AA A 12 ? A 21 ? A 13 ? A 20 ? 1 A G 13 1_555 A C 20 1_555 A C 14 1_555 A G 19 1_555 0.222 -0.694 3.420 -2.324 23.372 28.806 -4.181 -0.658 2.238 39.692 3.947 37.010 11 AA_G13C14:G19C20_AA A 13 ? A 20 ? A 14 ? A 19 ? 1 A C 14 1_555 A G 19 1_555 A G 15 1_555 A A 18 1_555 -1.040 0.054 3.266 1.721 9.891 54.408 -0.522 1.223 3.198 10.715 -1.864 55.257 12 AA_C14G15:A18G19_AA A 14 ? A 19 ? A 15 ? A 18 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'MALACHITE GREEN' _pdbx_entity_nonpoly.comp_id MGR #