data_1Q92 # _entry.id 1Q92 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1Q92 pdb_00001q92 10.2210/pdb1q92/pdb RCSB RCSB020069 ? ? WWPDB D_1000020069 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1MH9 . unspecified PDB 1Q91 'The same protein complexed with the inhibitor DPB-T' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1Q92 _pdbx_database_status.recvd_initial_deposition_date 2003-08-22 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Rinaldo-Matthis, A.' 1 'Rampazzo, C.' 2 'Balzarini, J.' 3 'Reichard, P.' 4 'Bianchi, V.' 5 'Nordlund, P.' 6 # _citation.id primary _citation.title 'Crystal structures of the mitochondrial deoxyribonucleotidase in complex with two specific inhibitors' _citation.journal_abbrev Mol.Pharmacol. _citation.journal_volume 65 _citation.page_first 860 _citation.page_last 867 _citation.year 2004 _citation.journal_id_ASTM MOPMA3 _citation.country US _citation.journal_id_ISSN 0026-895X _citation.journal_id_CSD 0197 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15044615 _citation.pdbx_database_id_DOI 10.1124/mol.65.4.860 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rinaldo-Matthis, A.' 1 ? primary 'Rampazzo, C.' 2 ? primary 'Balzarini, J.' 3 ? primary 'Reichard, P.' 4 ? primary 'Bianchi, V.' 5 ? primary 'Nordlund, P.' 6 ? # _cell.entry_id 1Q92 _cell.length_a 73.758 _cell.length_b 73.758 _cell.length_c 105.981 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1Q92 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '5(3)-deoxyribonucleotidase' 22841.119 1 3.1.3.5 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn '{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID' 290.210 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 326 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name deoxyribonucleotidase # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_seq_one_letter_code_can ;GGRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 GLY n 1 3 ARG n 1 4 ALA n 1 5 LEU n 1 6 ARG n 1 7 VAL n 1 8 LEU n 1 9 VAL n 1 10 ASP n 1 11 MET n 1 12 ASP n 1 13 GLY n 1 14 VAL n 1 15 LEU n 1 16 ALA n 1 17 ASP n 1 18 PHE n 1 19 GLU n 1 20 GLY n 1 21 GLY n 1 22 PHE n 1 23 LEU n 1 24 ARG n 1 25 LYS n 1 26 PHE n 1 27 ARG n 1 28 ALA n 1 29 ARG n 1 30 PHE n 1 31 PRO n 1 32 ASP n 1 33 GLN n 1 34 PRO n 1 35 PHE n 1 36 ILE n 1 37 ALA n 1 38 LEU n 1 39 GLU n 1 40 ASP n 1 41 ARG n 1 42 ARG n 1 43 GLY n 1 44 PHE n 1 45 TRP n 1 46 VAL n 1 47 SER n 1 48 GLU n 1 49 GLN n 1 50 TYR n 1 51 GLY n 1 52 ARG n 1 53 LEU n 1 54 ARG n 1 55 PRO n 1 56 GLY n 1 57 LEU n 1 58 SER n 1 59 GLU n 1 60 LYS n 1 61 ALA n 1 62 ILE n 1 63 SER n 1 64 ILE n 1 65 TRP n 1 66 GLU n 1 67 SER n 1 68 LYS n 1 69 ASN n 1 70 PHE n 1 71 PHE n 1 72 PHE n 1 73 GLU n 1 74 LEU n 1 75 GLU n 1 76 PRO n 1 77 LEU n 1 78 PRO n 1 79 GLY n 1 80 ALA n 1 81 VAL n 1 82 GLU n 1 83 ALA n 1 84 VAL n 1 85 LYS n 1 86 GLU n 1 87 MET n 1 88 ALA n 1 89 SER n 1 90 LEU n 1 91 GLN n 1 92 ASN n 1 93 THR n 1 94 ASP n 1 95 VAL n 1 96 PHE n 1 97 ILE n 1 98 CYS n 1 99 THR n 1 100 SER n 1 101 PRO n 1 102 ILE n 1 103 LYS n 1 104 MET n 1 105 PHE n 1 106 LYS n 1 107 TYR n 1 108 CYS n 1 109 PRO n 1 110 TYR n 1 111 GLU n 1 112 LYS n 1 113 TYR n 1 114 ALA n 1 115 TRP n 1 116 VAL n 1 117 GLU n 1 118 LYS n 1 119 TYR n 1 120 PHE n 1 121 GLY n 1 122 PRO n 1 123 ASP n 1 124 PHE n 1 125 LEU n 1 126 GLU n 1 127 GLN n 1 128 ILE n 1 129 VAL n 1 130 LEU n 1 131 THR n 1 132 ARG n 1 133 ASP n 1 134 LYS n 1 135 THR n 1 136 VAL n 1 137 VAL n 1 138 SER n 1 139 ALA n 1 140 ASP n 1 141 LEU n 1 142 LEU n 1 143 ILE n 1 144 ASP n 1 145 ASP n 1 146 ARG n 1 147 PRO n 1 148 ASP n 1 149 ILE n 1 150 THR n 1 151 GLY n 1 152 ALA n 1 153 GLU n 1 154 PRO n 1 155 THR n 1 156 PRO n 1 157 SER n 1 158 TRP n 1 159 GLU n 1 160 HIS n 1 161 VAL n 1 162 LEU n 1 163 PHE n 1 164 THR n 1 165 ALA n 1 166 CYS n 1 167 HIS n 1 168 ASN n 1 169 GLN n 1 170 HIS n 1 171 LEU n 1 172 GLN n 1 173 LEU n 1 174 GLN n 1 175 PRO n 1 176 PRO n 1 177 ARG n 1 178 ARG n 1 179 ARG n 1 180 LEU n 1 181 HIS n 1 182 SER n 1 183 TRP n 1 184 ALA n 1 185 ASP n 1 186 ASP n 1 187 TRP n 1 188 LYS n 1 189 ALA n 1 190 ILE n 1 191 LEU n 1 192 ASP n 1 193 SER n 1 194 LYS n 1 195 ARG n 1 196 PRO n 1 197 CYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NT5M_HUMAN _struct_ref.pdbx_db_accession Q9NPB1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;GGRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGA VEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFGPDFLEQIVLTRDKTVVSADLLIDDRPDITGAEPTPSWEH VLFTACHNQHLQLQPPRRRLHSWADDWKAILDSKRPC ; _struct_ref.pdbx_align_begin 32 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1Q92 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 197 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9NPB1 _struct_ref_seq.db_align_beg 32 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 228 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 32 _struct_ref_seq.pdbx_auth_seq_align_end 228 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DRM 'DNA linking' n '{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID' '1-TRANS-(2-PHOSPHONOMETHOXYCYCLOPENTYL)URACIL; PMCP-U' 'C10 H15 N2 O6 P' 290.210 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1Q92 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.63 _exptl_crystal.density_percent_sol 52.95 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.3 _exptl_crystal_grow.pdbx_details 'PEG 8000, potassium phosphate, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-12-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.933 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-2' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.933 # _reflns.entry_id 1Q92 _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.4 _reflns.d_resolution_low 30 _reflns.number_all 209551 _reflns.number_obs ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.4 _reflns_shell.d_res_low 1.45 _reflns_shell.percent_possible_all ? _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1Q92 _refine.ls_number_reflns_obs 35599 _refine.ls_number_reflns_all 37528 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.32 _refine.ls_d_res_high 1.40 _refine.ls_percent_reflns_obs 64.83 _refine.ls_R_factor_obs 0.13503 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.13337 _refine.ls_R_factor_R_free 0.16454 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 1929 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.974 _refine.correlation_coeff_Fo_to_Fc_free 0.967 _refine.B_iso_mean 17.719 _refine.aniso_B[1][1] 0.16 _refine.aniso_B[2][2] 0.16 _refine.aniso_B[3][3] -0.31 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 'PDB entry 1MH9' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.072 _refine.pdbx_overall_ESU_R_Free 0.064 _refine.overall_SU_ML 0.038 _refine.overall_SU_B 0.982 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1602 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 26 _refine_hist.number_atoms_solvent 326 _refine_hist.number_atoms_total 1954 _refine_hist.d_res_high 1.40 _refine_hist.d_res_low 25.32 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.020 0.022 ? 1659 'X-RAY DIFFRACTION' ? r_bond_other_d 0.002 0.020 ? 1489 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.856 1.963 ? 2223 'X-RAY DIFFRACTION' ? r_angle_other_deg 1.008 3.000 ? 3466 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 6.325 5.000 ? 178 'X-RAY DIFFRACTION' ? r_chiral_restr 0.132 0.200 ? 234 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.014 0.020 ? 1726 'X-RAY DIFFRACTION' ? r_gen_planes_other 0.019 0.020 ? 355 'X-RAY DIFFRACTION' ? r_nbd_refined 0.501 0.200 ? 413 'X-RAY DIFFRACTION' ? r_nbd_other 0.252 0.200 ? 1635 'X-RAY DIFFRACTION' ? r_nbtor_other 0.086 0.200 ? 933 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.249 0.200 ? 239 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.301 0.200 ? 13 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 0.385 0.200 ? 66 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.290 0.200 ? 26 'X-RAY DIFFRACTION' ? r_mcbond_it 1.730 1.500 ? 962 'X-RAY DIFFRACTION' ? r_mcangle_it 2.586 2.000 ? 1534 'X-RAY DIFFRACTION' ? r_scbond_it 3.304 3.000 ? 697 'X-RAY DIFFRACTION' ? r_scangle_it 4.797 4.500 ? 689 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 1.947 2.000 ? 1659 'X-RAY DIFFRACTION' ? r_sphericity_free 5.480 2.000 ? 327 'X-RAY DIFFRACTION' ? r_sphericity_bonded 3.822 2.000 ? 1627 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.402 _refine_ls_shell.d_res_low 1.439 _refine_ls_shell.number_reflns_R_work 573 _refine_ls_shell.R_factor_R_work 0.093 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.133 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 35 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1Q92 _struct.title 'Crystal structure of human mitochondrial deoxyribonucleotidase in complex with the inhibitor PMcP-U' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1Q92 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'alpha-beta rossman fold, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 17 ? PHE A 30 ? ASP A 48 PHE A 61 1 ? 14 HELX_P HELX_P2 2 ALA A 37 ? ARG A 41 ? ALA A 68 ARG A 72 5 ? 5 HELX_P HELX_P3 3 TRP A 45 ? ARG A 54 ? TRP A 76 ARG A 85 1 ? 10 HELX_P HELX_P4 4 GLY A 56 ? GLU A 66 ? GLY A 87 GLU A 97 1 ? 11 HELX_P HELX_P5 5 GLY A 79 ? LEU A 90 ? GLY A 110 LEU A 121 1 ? 12 HELX_P HELX_P6 6 TYR A 107 ? GLY A 121 ? TYR A 138 GLY A 152 1 ? 15 HELX_P HELX_P7 7 PRO A 122 ? GLU A 126 ? PRO A 153 GLU A 157 5 ? 5 HELX_P HELX_P8 8 ASP A 186 ? SER A 193 ? ASP A 217 SER A 224 1 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A ASP 10 OD2 ? ? ? 1_555 B MG . MG ? ? A ASP 41 A MG 1003 1_555 ? ? ? ? ? ? ? 2.028 ? ? metalc2 metalc ? ? A ASP 12 O ? ? ? 1_555 B MG . MG ? ? A ASP 43 A MG 1003 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc3 metalc ? ? A ASP 145 OD1 ? ? ? 1_555 B MG . MG ? ? A ASP 176 A MG 1003 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1003 A HOH 2008 1_555 ? ? ? ? ? ? ? 2.134 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1003 A HOH 2011 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1003 A HOH 2135 1_555 ? ? ? ? ? ? ? 2.071 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id PRO _struct_mon_prot_cis.label_seq_id 175 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id PRO _struct_mon_prot_cis.auth_seq_id 206 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 176 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 207 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 5.93 # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 128 ? LEU A 130 ? ILE A 159 LEU A 161 A 2 THR A 93 ? THR A 99 ? THR A 124 THR A 130 A 3 LEU A 5 ? VAL A 9 ? LEU A 36 VAL A 40 A 4 LEU A 141 ? ASP A 144 ? LEU A 172 ASP A 175 A 5 GLU A 159 ? PHE A 163 ? GLU A 190 PHE A 194 A 6 ARG A 178 ? LEU A 180 ? ARG A 209 LEU A 211 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 129 ? O VAL A 160 N ILE A 97 ? N ILE A 128 A 2 3 O ASP A 94 ? O ASP A 125 N LEU A 5 ? N LEU A 36 A 3 4 N LEU A 8 ? N LEU A 39 O LEU A 141 ? O LEU A 172 A 4 5 N LEU A 142 ? N LEU A 173 O VAL A 161 ? O VAL A 192 A 5 6 N LEU A 162 ? N LEU A 193 O ARG A 178 ? O ARG A 209 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 1003 ? 6 'BINDING SITE FOR RESIDUE MG A 1003' AC2 Software A DRM 1001 ? 19 'BINDING SITE FOR RESIDUE DRM A 1001' AC3 Software A GOL 2001 ? 9 'BINDING SITE FOR RESIDUE GOL A 2001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 10 ? ASP A 41 . ? 1_555 ? 2 AC1 6 ASP A 12 ? ASP A 43 . ? 1_555 ? 3 AC1 6 ASP A 145 ? ASP A 176 . ? 1_555 ? 4 AC1 6 HOH E . ? HOH A 2008 . ? 1_555 ? 5 AC1 6 HOH E . ? HOH A 2011 . ? 1_555 ? 6 AC1 6 HOH E . ? HOH A 2135 . ? 1_555 ? 7 AC2 19 ASP A 10 ? ASP A 41 . ? 1_555 ? 8 AC2 19 ASP A 12 ? ASP A 43 . ? 1_555 ? 9 AC2 19 PHE A 18 ? PHE A 49 . ? 1_555 ? 10 AC2 19 PHE A 44 ? PHE A 75 . ? 1_555 ? 11 AC2 19 TRP A 45 ? TRP A 76 . ? 1_555 ? 12 AC2 19 VAL A 46 ? VAL A 77 . ? 1_555 ? 13 AC2 19 SER A 100 ? SER A 131 . ? 1_555 ? 14 AC2 19 ILE A 102 ? ILE A 133 . ? 1_555 ? 15 AC2 19 LYS A 134 ? LYS A 165 . ? 1_555 ? 16 AC2 19 ARG A 146 ? ARG A 177 . ? 1_555 ? 17 AC2 19 HOH E . ? HOH A 2008 . ? 1_555 ? 18 AC2 19 HOH E . ? HOH A 2011 . ? 1_555 ? 19 AC2 19 HOH E . ? HOH A 2015 . ? 1_555 ? 20 AC2 19 HOH E . ? HOH A 2022 . ? 1_555 ? 21 AC2 19 HOH E . ? HOH A 2047 . ? 1_555 ? 22 AC2 19 HOH E . ? HOH A 2135 . ? 1_555 ? 23 AC2 19 HOH E . ? HOH A 2151 . ? 1_555 ? 24 AC2 19 HOH E . ? HOH A 2232 . ? 1_555 ? 25 AC2 19 HOH E . ? HOH A 2245 . ? 8_665 ? 26 AC3 9 ARG A 42 ? ARG A 73 . ? 1_555 ? 27 AC3 9 GLY A 43 ? GLY A 74 . ? 1_555 ? 28 AC3 9 HIS A 167 ? HIS A 198 . ? 1_555 ? 29 AC3 9 ASN A 168 ? ASN A 199 . ? 1_555 ? 30 AC3 9 GLN A 169 ? GLN A 200 . ? 1_555 ? 31 AC3 9 HIS A 170 ? HIS A 201 . ? 1_555 ? 32 AC3 9 LEU A 171 ? LEU A 202 . ? 1_555 ? 33 AC3 9 HOH E . ? HOH A 2302 . ? 5_545 ? 34 AC3 9 HOH E . ? HOH A 2304 . ? 1_555 ? # _database_PDB_matrix.entry_id 1Q92 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1Q92 _atom_sites.fract_transf_matrix[1][1] 0.013558 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013558 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009436 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 32 ? ? ? A . n A 1 2 GLY 2 33 33 GLY GLY A . n A 1 3 ARG 3 34 34 ARG ARG A . n A 1 4 ALA 4 35 35 ALA ALA A . n A 1 5 LEU 5 36 36 LEU LEU A . n A 1 6 ARG 6 37 37 ARG ARG A . n A 1 7 VAL 7 38 38 VAL VAL A . n A 1 8 LEU 8 39 39 LEU LEU A . n A 1 9 VAL 9 40 40 VAL VAL A . n A 1 10 ASP 10 41 41 ASP ASP A . n A 1 11 MET 11 42 42 MET MET A . n A 1 12 ASP 12 43 43 ASP ASP A . n A 1 13 GLY 13 44 44 GLY GLY A . n A 1 14 VAL 14 45 45 VAL VAL A . n A 1 15 LEU 15 46 46 LEU LEU A . n A 1 16 ALA 16 47 47 ALA ALA A . n A 1 17 ASP 17 48 48 ASP ASP A . n A 1 18 PHE 18 49 49 PHE PHE A . n A 1 19 GLU 19 50 50 GLU GLU A . n A 1 20 GLY 20 51 51 GLY GLY A . n A 1 21 GLY 21 52 52 GLY GLY A . n A 1 22 PHE 22 53 53 PHE PHE A . n A 1 23 LEU 23 54 54 LEU LEU A . n A 1 24 ARG 24 55 55 ARG ARG A . n A 1 25 LYS 25 56 56 LYS LYS A . n A 1 26 PHE 26 57 57 PHE PHE A . n A 1 27 ARG 27 58 58 ARG ARG A . n A 1 28 ALA 28 59 59 ALA ALA A . n A 1 29 ARG 29 60 60 ARG ARG A . n A 1 30 PHE 30 61 61 PHE PHE A . n A 1 31 PRO 31 62 62 PRO PRO A . n A 1 32 ASP 32 63 63 ASP ASP A . n A 1 33 GLN 33 64 64 GLN GLN A . n A 1 34 PRO 34 65 65 PRO PRO A . n A 1 35 PHE 35 66 66 PHE PHE A . n A 1 36 ILE 36 67 67 ILE ILE A . n A 1 37 ALA 37 68 68 ALA ALA A . n A 1 38 LEU 38 69 69 LEU LEU A . n A 1 39 GLU 39 70 70 GLU GLU A . n A 1 40 ASP 40 71 71 ASP ASP A . n A 1 41 ARG 41 72 72 ARG ARG A . n A 1 42 ARG 42 73 73 ARG ARG A . n A 1 43 GLY 43 74 74 GLY GLY A . n A 1 44 PHE 44 75 75 PHE PHE A . n A 1 45 TRP 45 76 76 TRP TRP A . n A 1 46 VAL 46 77 77 VAL VAL A . n A 1 47 SER 47 78 78 SER SER A . n A 1 48 GLU 48 79 79 GLU GLU A . n A 1 49 GLN 49 80 80 GLN GLN A . n A 1 50 TYR 50 81 81 TYR TYR A . n A 1 51 GLY 51 82 82 GLY GLY A . n A 1 52 ARG 52 83 83 ARG ARG A . n A 1 53 LEU 53 84 84 LEU LEU A . n A 1 54 ARG 54 85 85 ARG ARG A . n A 1 55 PRO 55 86 86 PRO PRO A . n A 1 56 GLY 56 87 87 GLY GLY A . n A 1 57 LEU 57 88 88 LEU LEU A . n A 1 58 SER 58 89 89 SER SER A . n A 1 59 GLU 59 90 90 GLU GLU A . n A 1 60 LYS 60 91 91 LYS LYS A . n A 1 61 ALA 61 92 92 ALA ALA A . n A 1 62 ILE 62 93 93 ILE ILE A . n A 1 63 SER 63 94 94 SER SER A . n A 1 64 ILE 64 95 95 ILE ILE A . n A 1 65 TRP 65 96 96 TRP TRP A . n A 1 66 GLU 66 97 97 GLU GLU A . n A 1 67 SER 67 98 98 SER SER A . n A 1 68 LYS 68 99 99 LYS LYS A . n A 1 69 ASN 69 100 100 ASN ASN A . n A 1 70 PHE 70 101 101 PHE PHE A . n A 1 71 PHE 71 102 102 PHE PHE A . n A 1 72 PHE 72 103 103 PHE PHE A . n A 1 73 GLU 73 104 104 GLU GLU A . n A 1 74 LEU 74 105 105 LEU LEU A . n A 1 75 GLU 75 106 106 GLU GLU A . n A 1 76 PRO 76 107 107 PRO PRO A . n A 1 77 LEU 77 108 108 LEU LEU A . n A 1 78 PRO 78 109 109 PRO PRO A . n A 1 79 GLY 79 110 110 GLY GLY A . n A 1 80 ALA 80 111 111 ALA ALA A . n A 1 81 VAL 81 112 112 VAL VAL A . n A 1 82 GLU 82 113 113 GLU GLU A . n A 1 83 ALA 83 114 114 ALA ALA A . n A 1 84 VAL 84 115 115 VAL VAL A . n A 1 85 LYS 85 116 116 LYS LYS A . n A 1 86 GLU 86 117 117 GLU GLU A . n A 1 87 MET 87 118 118 MET MET A . n A 1 88 ALA 88 119 119 ALA ALA A . n A 1 89 SER 89 120 120 SER SER A . n A 1 90 LEU 90 121 121 LEU LEU A . n A 1 91 GLN 91 122 122 GLN GLN A . n A 1 92 ASN 92 123 123 ASN ASN A . n A 1 93 THR 93 124 124 THR THR A . n A 1 94 ASP 94 125 125 ASP ASP A . n A 1 95 VAL 95 126 126 VAL VAL A . n A 1 96 PHE 96 127 127 PHE PHE A . n A 1 97 ILE 97 128 128 ILE ILE A . n A 1 98 CYS 98 129 129 CYS CYS A . n A 1 99 THR 99 130 130 THR THR A . n A 1 100 SER 100 131 131 SER SER A . n A 1 101 PRO 101 132 132 PRO PRO A . n A 1 102 ILE 102 133 133 ILE ILE A . n A 1 103 LYS 103 134 134 LYS LYS A . n A 1 104 MET 104 135 135 MET MET A . n A 1 105 PHE 105 136 136 PHE PHE A . n A 1 106 LYS 106 137 137 LYS LYS A . n A 1 107 TYR 107 138 138 TYR TYR A . n A 1 108 CYS 108 139 139 CYS CYS A . n A 1 109 PRO 109 140 140 PRO PRO A . n A 1 110 TYR 110 141 141 TYR TYR A . n A 1 111 GLU 111 142 142 GLU GLU A . n A 1 112 LYS 112 143 143 LYS LYS A . n A 1 113 TYR 113 144 144 TYR TYR A . n A 1 114 ALA 114 145 145 ALA ALA A . n A 1 115 TRP 115 146 146 TRP TRP A . n A 1 116 VAL 116 147 147 VAL VAL A . n A 1 117 GLU 117 148 148 GLU GLU A . n A 1 118 LYS 118 149 149 LYS LYS A . n A 1 119 TYR 119 150 150 TYR TYR A . n A 1 120 PHE 120 151 151 PHE PHE A . n A 1 121 GLY 121 152 152 GLY GLY A . n A 1 122 PRO 122 153 153 PRO PRO A . n A 1 123 ASP 123 154 154 ASP ASP A . n A 1 124 PHE 124 155 155 PHE PHE A . n A 1 125 LEU 125 156 156 LEU LEU A . n A 1 126 GLU 126 157 157 GLU GLU A . n A 1 127 GLN 127 158 158 GLN GLN A . n A 1 128 ILE 128 159 159 ILE ILE A . n A 1 129 VAL 129 160 160 VAL VAL A . n A 1 130 LEU 130 161 161 LEU LEU A . n A 1 131 THR 131 162 162 THR THR A . n A 1 132 ARG 132 163 163 ARG ARG A . n A 1 133 ASP 133 164 164 ASP ASP A . n A 1 134 LYS 134 165 165 LYS LYS A . n A 1 135 THR 135 166 166 THR THR A . n A 1 136 VAL 136 167 167 VAL VAL A . n A 1 137 VAL 137 168 168 VAL VAL A . n A 1 138 SER 138 169 169 SER SER A . n A 1 139 ALA 139 170 170 ALA ALA A . n A 1 140 ASP 140 171 171 ASP ASP A . n A 1 141 LEU 141 172 172 LEU LEU A . n A 1 142 LEU 142 173 173 LEU LEU A . n A 1 143 ILE 143 174 174 ILE ILE A . n A 1 144 ASP 144 175 175 ASP ASP A . n A 1 145 ASP 145 176 176 ASP ASP A . n A 1 146 ARG 146 177 177 ARG ARG A . n A 1 147 PRO 147 178 178 PRO PRO A . n A 1 148 ASP 148 179 179 ASP ASP A . n A 1 149 ILE 149 180 180 ILE ILE A . n A 1 150 THR 150 181 181 THR THR A . n A 1 151 GLY 151 182 182 GLY GLY A . n A 1 152 ALA 152 183 183 ALA ALA A . n A 1 153 GLU 153 184 184 GLU GLU A . n A 1 154 PRO 154 185 185 PRO PRO A . n A 1 155 THR 155 186 186 THR THR A . n A 1 156 PRO 156 187 187 PRO PRO A . n A 1 157 SER 157 188 188 SER SER A . n A 1 158 TRP 158 189 189 TRP TRP A . n A 1 159 GLU 159 190 190 GLU GLU A . n A 1 160 HIS 160 191 191 HIS HIS A . n A 1 161 VAL 161 192 192 VAL VAL A . n A 1 162 LEU 162 193 193 LEU LEU A . n A 1 163 PHE 163 194 194 PHE PHE A . n A 1 164 THR 164 195 195 THR THR A . n A 1 165 ALA 165 196 196 ALA ALA A . n A 1 166 CYS 166 197 197 CYS CYS A . n A 1 167 HIS 167 198 198 HIS HIS A . n A 1 168 ASN 168 199 199 ASN ASN A . n A 1 169 GLN 169 200 200 GLN GLN A . n A 1 170 HIS 170 201 201 HIS HIS A . n A 1 171 LEU 171 202 202 LEU LEU A . n A 1 172 GLN 172 203 203 GLN GLN A . n A 1 173 LEU 173 204 204 LEU LEU A . n A 1 174 GLN 174 205 205 GLN GLN A . n A 1 175 PRO 175 206 206 PRO PRO A . n A 1 176 PRO 176 207 207 PRO PRO A . n A 1 177 ARG 177 208 208 ARG ARG A . n A 1 178 ARG 178 209 209 ARG ARG A . n A 1 179 ARG 179 210 210 ARG ARG A . n A 1 180 LEU 180 211 211 LEU LEU A . n A 1 181 HIS 181 212 212 HIS HIS A . n A 1 182 SER 182 213 213 SER SER A . n A 1 183 TRP 183 214 214 TRP TRP A . n A 1 184 ALA 184 215 215 ALA ALA A . n A 1 185 ASP 185 216 216 ASP ASP A . n A 1 186 ASP 186 217 217 ASP ASP A . n A 1 187 TRP 187 218 218 TRP TRP A . n A 1 188 LYS 188 219 219 LYS LYS A . n A 1 189 ALA 189 220 220 ALA ALA A . n A 1 190 ILE 190 221 221 ILE ILE A . n A 1 191 LEU 191 222 222 LEU LEU A . n A 1 192 ASP 192 223 223 ASP ASP A . n A 1 193 SER 193 224 224 SER SER A . n A 1 194 LYS 194 225 225 LYS LYS A . n A 1 195 ARG 195 226 226 ARG ARG A . n A 1 196 PRO 196 227 227 PRO PRO A . n A 1 197 CYS 197 228 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 1003 3 MG MG A . C 3 DRM 1 1001 1 DRM DRG A . D 4 GOL 1 2001 1 GOL GOL A . E 5 HOH 1 2002 1 HOH HOH A . E 5 HOH 2 2003 2 HOH HOH A . E 5 HOH 3 2004 3 HOH HOH A . E 5 HOH 4 2005 4 HOH HOH A . E 5 HOH 5 2006 5 HOH HOH A . E 5 HOH 6 2007 6 HOH HOH A . E 5 HOH 7 2008 7 HOH HOH A . E 5 HOH 8 2009 8 HOH HOH A . E 5 HOH 9 2010 9 HOH HOH A . E 5 HOH 10 2011 10 HOH HOH A . E 5 HOH 11 2012 11 HOH HOH A . E 5 HOH 12 2013 12 HOH HOH A . E 5 HOH 13 2014 13 HOH HOH A . E 5 HOH 14 2015 14 HOH HOH A . E 5 HOH 15 2016 15 HOH HOH A . E 5 HOH 16 2017 16 HOH HOH A . E 5 HOH 17 2018 17 HOH HOH A . E 5 HOH 18 2019 18 HOH HOH A . E 5 HOH 19 2020 19 HOH HOH A . E 5 HOH 20 2021 20 HOH HOH A . E 5 HOH 21 2022 21 HOH HOH A . E 5 HOH 22 2023 22 HOH HOH A . E 5 HOH 23 2024 23 HOH HOH A . E 5 HOH 24 2025 24 HOH HOH A . E 5 HOH 25 2026 25 HOH HOH A . E 5 HOH 26 2027 26 HOH HOH A . E 5 HOH 27 2028 27 HOH HOH A . E 5 HOH 28 2029 28 HOH HOH A . E 5 HOH 29 2030 29 HOH HOH A . E 5 HOH 30 2031 30 HOH HOH A . E 5 HOH 31 2032 31 HOH HOH A . E 5 HOH 32 2033 32 HOH HOH A . E 5 HOH 33 2034 33 HOH HOH A . E 5 HOH 34 2035 34 HOH HOH A . E 5 HOH 35 2036 35 HOH HOH A . E 5 HOH 36 2037 36 HOH HOH A . E 5 HOH 37 2038 37 HOH HOH A . E 5 HOH 38 2039 39 HOH HOH A . E 5 HOH 39 2040 40 HOH HOH A . E 5 HOH 40 2041 41 HOH HOH A . E 5 HOH 41 2042 42 HOH HOH A . E 5 HOH 42 2043 43 HOH HOH A . E 5 HOH 43 2044 44 HOH HOH A . E 5 HOH 44 2045 45 HOH HOH A . E 5 HOH 45 2046 46 HOH HOH A . E 5 HOH 46 2047 47 HOH HOH A . E 5 HOH 47 2048 48 HOH HOH A . E 5 HOH 48 2049 49 HOH HOH A . E 5 HOH 49 2050 51 HOH HOH A . E 5 HOH 50 2051 52 HOH HOH A . E 5 HOH 51 2052 53 HOH HOH A . E 5 HOH 52 2053 54 HOH HOH A . E 5 HOH 53 2054 55 HOH HOH A . E 5 HOH 54 2055 56 HOH HOH A . E 5 HOH 55 2056 57 HOH HOH A . E 5 HOH 56 2057 58 HOH HOH A . E 5 HOH 57 2058 59 HOH HOH A . E 5 HOH 58 2059 60 HOH HOH A . E 5 HOH 59 2060 62 HOH HOH A . E 5 HOH 60 2061 63 HOH HOH A . E 5 HOH 61 2062 64 HOH HOH A . E 5 HOH 62 2063 65 HOH HOH A . E 5 HOH 63 2064 66 HOH HOH A . E 5 HOH 64 2065 67 HOH HOH A . E 5 HOH 65 2066 68 HOH HOH A . E 5 HOH 66 2067 69 HOH HOH A . E 5 HOH 67 2068 71 HOH HOH A . E 5 HOH 68 2069 72 HOH HOH A . E 5 HOH 69 2070 73 HOH HOH A . E 5 HOH 70 2071 74 HOH HOH A . E 5 HOH 71 2072 75 HOH HOH A . E 5 HOH 72 2073 76 HOH HOH A . E 5 HOH 73 2074 77 HOH HOH A . E 5 HOH 74 2075 78 HOH HOH A . E 5 HOH 75 2076 79 HOH HOH A . E 5 HOH 76 2077 80 HOH HOH A . E 5 HOH 77 2078 81 HOH HOH A . E 5 HOH 78 2079 82 HOH HOH A . E 5 HOH 79 2080 83 HOH HOH A . E 5 HOH 80 2081 84 HOH HOH A . E 5 HOH 81 2082 85 HOH HOH A . E 5 HOH 82 2083 86 HOH HOH A . E 5 HOH 83 2084 87 HOH HOH A . E 5 HOH 84 2085 88 HOH HOH A . E 5 HOH 85 2086 89 HOH HOH A . E 5 HOH 86 2087 90 HOH HOH A . E 5 HOH 87 2088 91 HOH HOH A . E 5 HOH 88 2089 92 HOH HOH A . E 5 HOH 89 2090 95 HOH HOH A . E 5 HOH 90 2091 96 HOH HOH A . E 5 HOH 91 2092 97 HOH HOH A . E 5 HOH 92 2093 98 HOH HOH A . E 5 HOH 93 2094 99 HOH HOH A . E 5 HOH 94 2095 100 HOH HOH A . E 5 HOH 95 2096 101 HOH HOH A . E 5 HOH 96 2097 102 HOH HOH A . E 5 HOH 97 2098 103 HOH HOH A . E 5 HOH 98 2099 104 HOH HOH A . E 5 HOH 99 2100 105 HOH HOH A . E 5 HOH 100 2101 106 HOH HOH A . E 5 HOH 101 2102 107 HOH HOH A . E 5 HOH 102 2103 108 HOH HOH A . E 5 HOH 103 2104 109 HOH HOH A . E 5 HOH 104 2105 112 HOH HOH A . E 5 HOH 105 2106 113 HOH HOH A . E 5 HOH 106 2107 114 HOH HOH A . E 5 HOH 107 2108 115 HOH HOH A . E 5 HOH 108 2109 116 HOH HOH A . E 5 HOH 109 2110 117 HOH HOH A . E 5 HOH 110 2111 118 HOH HOH A . E 5 HOH 111 2112 119 HOH HOH A . E 5 HOH 112 2113 120 HOH HOH A . E 5 HOH 113 2114 121 HOH HOH A . E 5 HOH 114 2115 122 HOH HOH A . E 5 HOH 115 2116 123 HOH HOH A . E 5 HOH 116 2117 124 HOH HOH A . E 5 HOH 117 2118 125 HOH HOH A . E 5 HOH 118 2119 126 HOH HOH A . E 5 HOH 119 2120 127 HOH HOH A . E 5 HOH 120 2121 128 HOH HOH A . E 5 HOH 121 2122 129 HOH HOH A . E 5 HOH 122 2123 130 HOH HOH A . E 5 HOH 123 2124 131 HOH HOH A . E 5 HOH 124 2125 132 HOH HOH A . E 5 HOH 125 2126 133 HOH HOH A . E 5 HOH 126 2127 134 HOH HOH A . E 5 HOH 127 2128 135 HOH HOH A . E 5 HOH 128 2129 136 HOH HOH A . E 5 HOH 129 2130 137 HOH HOH A . E 5 HOH 130 2131 138 HOH HOH A . E 5 HOH 131 2132 139 HOH HOH A . E 5 HOH 132 2133 140 HOH HOH A . E 5 HOH 133 2134 141 HOH HOH A . E 5 HOH 134 2135 142 HOH HOH A . E 5 HOH 135 2136 144 HOH HOH A . E 5 HOH 136 2137 145 HOH HOH A . E 5 HOH 137 2138 146 HOH HOH A . E 5 HOH 138 2139 147 HOH HOH A . E 5 HOH 139 2140 148 HOH HOH A . E 5 HOH 140 2141 149 HOH HOH A . E 5 HOH 141 2142 151 HOH HOH A . E 5 HOH 142 2143 152 HOH HOH A . E 5 HOH 143 2144 153 HOH HOH A . E 5 HOH 144 2145 154 HOH HOH A . E 5 HOH 145 2146 156 HOH HOH A . E 5 HOH 146 2147 157 HOH HOH A . E 5 HOH 147 2148 158 HOH HOH A . E 5 HOH 148 2149 160 HOH HOH A . E 5 HOH 149 2150 161 HOH HOH A . E 5 HOH 150 2151 162 HOH HOH A . E 5 HOH 151 2152 163 HOH HOH A . E 5 HOH 152 2153 164 HOH HOH A . E 5 HOH 153 2154 165 HOH HOH A . E 5 HOH 154 2155 166 HOH HOH A . E 5 HOH 155 2156 167 HOH HOH A . E 5 HOH 156 2157 168 HOH HOH A . E 5 HOH 157 2158 169 HOH HOH A . E 5 HOH 158 2159 170 HOH HOH A . E 5 HOH 159 2160 171 HOH HOH A . E 5 HOH 160 2161 172 HOH HOH A . E 5 HOH 161 2162 173 HOH HOH A . E 5 HOH 162 2163 174 HOH HOH A . E 5 HOH 163 2164 175 HOH HOH A . E 5 HOH 164 2165 176 HOH HOH A . E 5 HOH 165 2166 177 HOH HOH A . E 5 HOH 166 2167 178 HOH HOH A . E 5 HOH 167 2168 179 HOH HOH A . E 5 HOH 168 2169 180 HOH HOH A . E 5 HOH 169 2170 181 HOH HOH A . E 5 HOH 170 2171 182 HOH HOH A . E 5 HOH 171 2172 183 HOH HOH A . E 5 HOH 172 2173 184 HOH HOH A . E 5 HOH 173 2174 185 HOH HOH A . E 5 HOH 174 2175 186 HOH HOH A . E 5 HOH 175 2176 187 HOH HOH A . E 5 HOH 176 2177 188 HOH HOH A . E 5 HOH 177 2178 189 HOH HOH A . E 5 HOH 178 2179 190 HOH HOH A . E 5 HOH 179 2180 191 HOH HOH A . E 5 HOH 180 2181 192 HOH HOH A . E 5 HOH 181 2182 193 HOH HOH A . E 5 HOH 182 2183 194 HOH HOH A . E 5 HOH 183 2184 195 HOH HOH A . E 5 HOH 184 2185 196 HOH HOH A . E 5 HOH 185 2186 197 HOH HOH A . E 5 HOH 186 2187 198 HOH HOH A . E 5 HOH 187 2188 199 HOH HOH A . E 5 HOH 188 2189 200 HOH HOH A . E 5 HOH 189 2190 201 HOH HOH A . E 5 HOH 190 2191 202 HOH HOH A . E 5 HOH 191 2192 203 HOH HOH A . E 5 HOH 192 2193 204 HOH HOH A . E 5 HOH 193 2194 205 HOH HOH A . E 5 HOH 194 2195 206 HOH HOH A . E 5 HOH 195 2196 207 HOH HOH A . E 5 HOH 196 2197 208 HOH HOH A . E 5 HOH 197 2198 209 HOH HOH A . E 5 HOH 198 2199 210 HOH HOH A . E 5 HOH 199 2200 211 HOH HOH A . E 5 HOH 200 2201 212 HOH HOH A . E 5 HOH 201 2202 213 HOH HOH A . E 5 HOH 202 2203 214 HOH HOH A . E 5 HOH 203 2204 215 HOH HOH A . E 5 HOH 204 2205 216 HOH HOH A . E 5 HOH 205 2206 217 HOH HOH A . E 5 HOH 206 2207 218 HOH HOH A . E 5 HOH 207 2208 219 HOH HOH A . E 5 HOH 208 2209 220 HOH HOH A . E 5 HOH 209 2210 221 HOH HOH A . E 5 HOH 210 2211 222 HOH HOH A . E 5 HOH 211 2212 223 HOH HOH A . E 5 HOH 212 2213 224 HOH HOH A . E 5 HOH 213 2214 225 HOH HOH A . E 5 HOH 214 2215 226 HOH HOH A . E 5 HOH 215 2216 227 HOH HOH A . E 5 HOH 216 2217 228 HOH HOH A . E 5 HOH 217 2218 229 HOH HOH A . E 5 HOH 218 2219 230 HOH HOH A . E 5 HOH 219 2220 231 HOH HOH A . E 5 HOH 220 2221 232 HOH HOH A . E 5 HOH 221 2222 233 HOH HOH A . E 5 HOH 222 2223 234 HOH HOH A . E 5 HOH 223 2224 235 HOH HOH A . E 5 HOH 224 2225 236 HOH HOH A . E 5 HOH 225 2226 237 HOH HOH A . E 5 HOH 226 2227 238 HOH HOH A . E 5 HOH 227 2228 239 HOH HOH A . E 5 HOH 228 2229 240 HOH HOH A . E 5 HOH 229 2230 241 HOH HOH A . E 5 HOH 230 2231 242 HOH HOH A . E 5 HOH 231 2232 245 HOH HOH A . E 5 HOH 232 2233 246 HOH HOH A . E 5 HOH 233 2234 247 HOH HOH A . E 5 HOH 234 2235 248 HOH HOH A . E 5 HOH 235 2236 249 HOH HOH A . E 5 HOH 236 2237 250 HOH HOH A . E 5 HOH 237 2238 251 HOH HOH A . E 5 HOH 238 2239 252 HOH HOH A . E 5 HOH 239 2240 253 HOH HOH A . E 5 HOH 240 2241 254 HOH HOH A . E 5 HOH 241 2242 255 HOH HOH A . E 5 HOH 242 2243 256 HOH HOH A . E 5 HOH 243 2244 257 HOH HOH A . E 5 HOH 244 2245 258 HOH HOH A . E 5 HOH 245 2246 259 HOH HOH A . E 5 HOH 246 2247 260 HOH HOH A . E 5 HOH 247 2248 261 HOH HOH A . E 5 HOH 248 2249 262 HOH HOH A . E 5 HOH 249 2250 263 HOH HOH A . E 5 HOH 250 2251 264 HOH HOH A . E 5 HOH 251 2252 265 HOH HOH A . E 5 HOH 252 2253 266 HOH HOH A . E 5 HOH 253 2254 267 HOH HOH A . E 5 HOH 254 2255 268 HOH HOH A . E 5 HOH 255 2256 269 HOH HOH A . E 5 HOH 256 2257 270 HOH HOH A . E 5 HOH 257 2258 271 HOH HOH A . E 5 HOH 258 2259 272 HOH HOH A . E 5 HOH 259 2260 273 HOH HOH A . E 5 HOH 260 2261 274 HOH HOH A . E 5 HOH 261 2262 275 HOH HOH A . E 5 HOH 262 2263 276 HOH HOH A . E 5 HOH 263 2264 277 HOH HOH A . E 5 HOH 264 2265 278 HOH HOH A . E 5 HOH 265 2266 279 HOH HOH A . E 5 HOH 266 2267 280 HOH HOH A . E 5 HOH 267 2268 281 HOH HOH A . E 5 HOH 268 2269 282 HOH HOH A . E 5 HOH 269 2270 283 HOH HOH A . E 5 HOH 270 2271 284 HOH HOH A . E 5 HOH 271 2272 285 HOH HOH A . E 5 HOH 272 2273 286 HOH HOH A . E 5 HOH 273 2274 287 HOH HOH A . E 5 HOH 274 2275 288 HOH HOH A . E 5 HOH 275 2276 289 HOH HOH A . E 5 HOH 276 2277 290 HOH HOH A . E 5 HOH 277 2278 291 HOH HOH A . E 5 HOH 278 2279 292 HOH HOH A . E 5 HOH 279 2280 293 HOH HOH A . E 5 HOH 280 2281 294 HOH HOH A . E 5 HOH 281 2282 295 HOH HOH A . E 5 HOH 282 2283 296 HOH HOH A . E 5 HOH 283 2284 297 HOH HOH A . E 5 HOH 284 2285 298 HOH HOH A . E 5 HOH 285 2286 299 HOH HOH A . E 5 HOH 286 2287 300 HOH HOH A . E 5 HOH 287 2288 301 HOH HOH A . E 5 HOH 288 2289 303 HOH HOH A . E 5 HOH 289 2290 304 HOH HOH A . E 5 HOH 290 2291 305 HOH HOH A . E 5 HOH 291 2292 306 HOH HOH A . E 5 HOH 292 2293 307 HOH HOH A . E 5 HOH 293 2294 308 HOH HOH A . E 5 HOH 294 2295 309 HOH HOH A . E 5 HOH 295 2296 310 HOH HOH A . E 5 HOH 296 2297 311 HOH HOH A . E 5 HOH 297 2298 312 HOH HOH A . E 5 HOH 298 2299 313 HOH HOH A . E 5 HOH 299 2300 314 HOH HOH A . E 5 HOH 300 2301 315 HOH HOH A . E 5 HOH 301 2302 316 HOH HOH A . E 5 HOH 302 2303 317 HOH HOH A . E 5 HOH 303 2304 318 HOH HOH A . E 5 HOH 304 2305 319 HOH HOH A . E 5 HOH 305 2306 320 HOH HOH A . E 5 HOH 306 2307 321 HOH HOH A . E 5 HOH 307 2308 322 HOH HOH A . E 5 HOH 308 2309 323 HOH HOH A . E 5 HOH 309 2310 324 HOH HOH A . E 5 HOH 310 2311 325 HOH HOH A . E 5 HOH 311 2312 326 HOH HOH A . E 5 HOH 312 2313 327 HOH HOH A . E 5 HOH 313 2314 328 HOH HOH A . E 5 HOH 314 2315 329 HOH HOH A . E 5 HOH 315 2316 330 HOH HOH A . E 5 HOH 316 2317 331 HOH HOH A . E 5 HOH 317 2318 332 HOH HOH A . E 5 HOH 318 2319 333 HOH HOH A . E 5 HOH 319 2320 334 HOH HOH A . E 5 HOH 320 2321 335 HOH HOH A . E 5 HOH 321 2322 336 HOH HOH A . E 5 HOH 322 2323 337 HOH HOH A . E 5 HOH 323 2324 338 HOH HOH A . E 5 HOH 324 2325 339 HOH HOH A . E 5 HOH 325 2326 340 HOH HOH A . E 5 HOH 326 2327 341 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OD2 ? A ASP 10 ? A ASP 41 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? A ASP 12 ? A ASP 43 ? 1_555 89.1 ? 2 OD2 ? A ASP 10 ? A ASP 41 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 86.2 ? 3 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 91.3 ? 4 OD2 ? A ASP 10 ? A ASP 41 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_555 89.3 ? 5 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_555 178.2 ? 6 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_555 89.3 ? 7 OD2 ? A ASP 10 ? A ASP 41 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2011 ? 1_555 90.4 ? 8 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2011 ? 1_555 92.7 ? 9 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2011 ? 1_555 174.7 ? 10 O ? E HOH . ? A HOH 2008 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2011 ? 1_555 86.7 ? 11 OD2 ? A ASP 10 ? A ASP 41 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2135 ? 1_555 172.6 ? 12 O ? A ASP 12 ? A ASP 43 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2135 ? 1_555 88.2 ? 13 OD1 ? A ASP 145 ? A ASP 176 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2135 ? 1_555 87.0 ? 14 O ? E HOH . ? A HOH 2008 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2135 ? 1_555 93.5 ? 15 O ? E HOH . ? A HOH 2011 ? 1_555 MG ? B MG . ? A MG 1003 ? 1_555 O ? E HOH . ? A HOH 2135 ? 1_555 96.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-04-20 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' chem_comp_atom 3 4 'Structure model' chem_comp_bond 4 4 'Structure model' database_2 5 4 'Structure model' pdbx_initial_refinement_model 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.pdbx_synonyms' 2 4 'Structure model' '_database_2.pdbx_DOI' 3 4 'Structure model' '_database_2.pdbx_database_accession' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.value' 7 4 'Structure model' '_struct_conn.pdbx_dist_value' 8 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 9 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 19 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.24 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 2107 ? ? O A HOH 2225 ? ? 2.03 2 1 N A GLY 33 ? ? O A HOH 2149 ? ? 2.14 3 1 O A HOH 2266 ? ? O A HOH 2291 ? ? 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 2139 ? ? 1_555 O A HOH 2253 ? ? 3_554 2.01 2 1 O A HOH 2088 ? ? 1_555 O A HOH 2098 ? ? 4_455 2.11 3 1 O A HOH 2130 ? ? 1_555 O A HOH 2295 ? ? 5_555 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LEU _pdbx_validate_rmsd_bond.auth_seq_id_1 108 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 PRO _pdbx_validate_rmsd_bond.auth_seq_id_2 109 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.457 _pdbx_validate_rmsd_bond.bond_target_value 1.338 _pdbx_validate_rmsd_bond.bond_deviation 0.119 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 37 ? ? CZ A ARG 37 ? ? NH1 A ARG 37 ? ? 128.08 120.30 7.78 0.50 N 2 1 NE A ARG 37 ? ? CZ A ARG 37 ? ? NH2 A ARG 37 ? ? 112.48 120.30 -7.82 0.50 N 3 1 NE A ARG 55 ? ? CZ A ARG 55 ? ? NH1 A ARG 55 ? ? 123.64 120.30 3.34 0.50 N 4 1 CB A ASP 63 ? ? CG A ASP 63 ? ? OD2 A ASP 63 ? ? 124.87 118.30 6.57 0.90 N 5 1 O A GLY 82 ? ? C A GLY 82 ? ? N A ARG 83 ? ? 112.51 122.70 -10.19 1.60 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 42 ? ? -96.48 -70.72 2 1 VAL A 45 ? ? -128.86 -54.21 3 1 PHE A 61 ? ? -116.55 59.96 4 1 ARG A 85 ? ? -171.27 135.46 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LEU _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 69 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.01 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 32 ? A GLY 1 2 1 Y 1 A CYS 228 ? A CYS 197 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DRM OP2 O N N 88 DRM P P N N 89 DRM OP1 O N N 90 DRM OP3 O N N 91 DRM "C6'" C N N 92 DRM "O5'" O N N 93 DRM "C5'" C N R 94 DRM "C4'" C N N 95 DRM "C3'" C N N 96 DRM "C2'" C N N 97 DRM "C1'" C N R 98 DRM N1 N N N 99 DRM C6 C N N 100 DRM C5 C N N 101 DRM C4 C N N 102 DRM O4 O N N 103 DRM N3 N N N 104 DRM C2 C N N 105 DRM O2 O N N 106 DRM HOP2 H N N 107 DRM HOP3 H N N 108 DRM "H6'1" H N N 109 DRM "H6'2" H N N 110 DRM "H5'" H N N 111 DRM "H4'1" H N N 112 DRM "H4'2" H N N 113 DRM "H3'1" H N N 114 DRM "H3'2" H N N 115 DRM "H2'" H N N 116 DRM "H2''" H N N 117 DRM "H1'" H N N 118 DRM H6 H N N 119 DRM H5 H N N 120 DRM H3 H N N 121 GLN N N N N 122 GLN CA C N S 123 GLN C C N N 124 GLN O O N N 125 GLN CB C N N 126 GLN CG C N N 127 GLN CD C N N 128 GLN OE1 O N N 129 GLN NE2 N N N 130 GLN OXT O N N 131 GLN H H N N 132 GLN H2 H N N 133 GLN HA H N N 134 GLN HB2 H N N 135 GLN HB3 H N N 136 GLN HG2 H N N 137 GLN HG3 H N N 138 GLN HE21 H N N 139 GLN HE22 H N N 140 GLN HXT H N N 141 GLU N N N N 142 GLU CA C N S 143 GLU C C N N 144 GLU O O N N 145 GLU CB C N N 146 GLU CG C N N 147 GLU CD C N N 148 GLU OE1 O N N 149 GLU OE2 O N N 150 GLU OXT O N N 151 GLU H H N N 152 GLU H2 H N N 153 GLU HA H N N 154 GLU HB2 H N N 155 GLU HB3 H N N 156 GLU HG2 H N N 157 GLU HG3 H N N 158 GLU HE2 H N N 159 GLU HXT H N N 160 GLY N N N N 161 GLY CA C N N 162 GLY C C N N 163 GLY O O N N 164 GLY OXT O N N 165 GLY H H N N 166 GLY H2 H N N 167 GLY HA2 H N N 168 GLY HA3 H N N 169 GLY HXT H N N 170 GOL C1 C N N 171 GOL O1 O N N 172 GOL C2 C N N 173 GOL O2 O N N 174 GOL C3 C N N 175 GOL O3 O N N 176 GOL H11 H N N 177 GOL H12 H N N 178 GOL HO1 H N N 179 GOL H2 H N N 180 GOL HO2 H N N 181 GOL H31 H N N 182 GOL H32 H N N 183 GOL HO3 H N N 184 HIS N N N N 185 HIS CA C N S 186 HIS C C N N 187 HIS O O N N 188 HIS CB C N N 189 HIS CG C Y N 190 HIS ND1 N Y N 191 HIS CD2 C Y N 192 HIS CE1 C Y N 193 HIS NE2 N Y N 194 HIS OXT O N N 195 HIS H H N N 196 HIS H2 H N N 197 HIS HA H N N 198 HIS HB2 H N N 199 HIS HB3 H N N 200 HIS HD1 H N N 201 HIS HD2 H N N 202 HIS HE1 H N N 203 HIS HE2 H N N 204 HIS HXT H N N 205 HOH O O N N 206 HOH H1 H N N 207 HOH H2 H N N 208 ILE N N N N 209 ILE CA C N S 210 ILE C C N N 211 ILE O O N N 212 ILE CB C N S 213 ILE CG1 C N N 214 ILE CG2 C N N 215 ILE CD1 C N N 216 ILE OXT O N N 217 ILE H H N N 218 ILE H2 H N N 219 ILE HA H N N 220 ILE HB H N N 221 ILE HG12 H N N 222 ILE HG13 H N N 223 ILE HG21 H N N 224 ILE HG22 H N N 225 ILE HG23 H N N 226 ILE HD11 H N N 227 ILE HD12 H N N 228 ILE HD13 H N N 229 ILE HXT H N N 230 LEU N N N N 231 LEU CA C N S 232 LEU C C N N 233 LEU O O N N 234 LEU CB C N N 235 LEU CG C N N 236 LEU CD1 C N N 237 LEU CD2 C N N 238 LEU OXT O N N 239 LEU H H N N 240 LEU H2 H N N 241 LEU HA H N N 242 LEU HB2 H N N 243 LEU HB3 H N N 244 LEU HG H N N 245 LEU HD11 H N N 246 LEU HD12 H N N 247 LEU HD13 H N N 248 LEU HD21 H N N 249 LEU HD22 H N N 250 LEU HD23 H N N 251 LEU HXT H N N 252 LYS N N N N 253 LYS CA C N S 254 LYS C C N N 255 LYS O O N N 256 LYS CB C N N 257 LYS CG C N N 258 LYS CD C N N 259 LYS CE C N N 260 LYS NZ N N N 261 LYS OXT O N N 262 LYS H H N N 263 LYS H2 H N N 264 LYS HA H N N 265 LYS HB2 H N N 266 LYS HB3 H N N 267 LYS HG2 H N N 268 LYS HG3 H N N 269 LYS HD2 H N N 270 LYS HD3 H N N 271 LYS HE2 H N N 272 LYS HE3 H N N 273 LYS HZ1 H N N 274 LYS HZ2 H N N 275 LYS HZ3 H N N 276 LYS HXT H N N 277 MET N N N N 278 MET CA C N S 279 MET C C N N 280 MET O O N N 281 MET CB C N N 282 MET CG C N N 283 MET SD S N N 284 MET CE C N N 285 MET OXT O N N 286 MET H H N N 287 MET H2 H N N 288 MET HA H N N 289 MET HB2 H N N 290 MET HB3 H N N 291 MET HG2 H N N 292 MET HG3 H N N 293 MET HE1 H N N 294 MET HE2 H N N 295 MET HE3 H N N 296 MET HXT H N N 297 MG MG MG N N 298 PHE N N N N 299 PHE CA C N S 300 PHE C C N N 301 PHE O O N N 302 PHE CB C N N 303 PHE CG C Y N 304 PHE CD1 C Y N 305 PHE CD2 C Y N 306 PHE CE1 C Y N 307 PHE CE2 C Y N 308 PHE CZ C Y N 309 PHE OXT O N N 310 PHE H H N N 311 PHE H2 H N N 312 PHE HA H N N 313 PHE HB2 H N N 314 PHE HB3 H N N 315 PHE HD1 H N N 316 PHE HD2 H N N 317 PHE HE1 H N N 318 PHE HE2 H N N 319 PHE HZ H N N 320 PHE HXT H N N 321 PRO N N N N 322 PRO CA C N S 323 PRO C C N N 324 PRO O O N N 325 PRO CB C N N 326 PRO CG C N N 327 PRO CD C N N 328 PRO OXT O N N 329 PRO H H N N 330 PRO HA H N N 331 PRO HB2 H N N 332 PRO HB3 H N N 333 PRO HG2 H N N 334 PRO HG3 H N N 335 PRO HD2 H N N 336 PRO HD3 H N N 337 PRO HXT H N N 338 SER N N N N 339 SER CA C N S 340 SER C C N N 341 SER O O N N 342 SER CB C N N 343 SER OG O N N 344 SER OXT O N N 345 SER H H N N 346 SER H2 H N N 347 SER HA H N N 348 SER HB2 H N N 349 SER HB3 H N N 350 SER HG H N N 351 SER HXT H N N 352 THR N N N N 353 THR CA C N S 354 THR C C N N 355 THR O O N N 356 THR CB C N R 357 THR OG1 O N N 358 THR CG2 C N N 359 THR OXT O N N 360 THR H H N N 361 THR H2 H N N 362 THR HA H N N 363 THR HB H N N 364 THR HG1 H N N 365 THR HG21 H N N 366 THR HG22 H N N 367 THR HG23 H N N 368 THR HXT H N N 369 TRP N N N N 370 TRP CA C N S 371 TRP C C N N 372 TRP O O N N 373 TRP CB C N N 374 TRP CG C Y N 375 TRP CD1 C Y N 376 TRP CD2 C Y N 377 TRP NE1 N Y N 378 TRP CE2 C Y N 379 TRP CE3 C Y N 380 TRP CZ2 C Y N 381 TRP CZ3 C Y N 382 TRP CH2 C Y N 383 TRP OXT O N N 384 TRP H H N N 385 TRP H2 H N N 386 TRP HA H N N 387 TRP HB2 H N N 388 TRP HB3 H N N 389 TRP HD1 H N N 390 TRP HE1 H N N 391 TRP HE3 H N N 392 TRP HZ2 H N N 393 TRP HZ3 H N N 394 TRP HH2 H N N 395 TRP HXT H N N 396 TYR N N N N 397 TYR CA C N S 398 TYR C C N N 399 TYR O O N N 400 TYR CB C N N 401 TYR CG C Y N 402 TYR CD1 C Y N 403 TYR CD2 C Y N 404 TYR CE1 C Y N 405 TYR CE2 C Y N 406 TYR CZ C Y N 407 TYR OH O N N 408 TYR OXT O N N 409 TYR H H N N 410 TYR H2 H N N 411 TYR HA H N N 412 TYR HB2 H N N 413 TYR HB3 H N N 414 TYR HD1 H N N 415 TYR HD2 H N N 416 TYR HE1 H N N 417 TYR HE2 H N N 418 TYR HH H N N 419 TYR HXT H N N 420 VAL N N N N 421 VAL CA C N S 422 VAL C C N N 423 VAL O O N N 424 VAL CB C N N 425 VAL CG1 C N N 426 VAL CG2 C N N 427 VAL OXT O N N 428 VAL H H N N 429 VAL H2 H N N 430 VAL HA H N N 431 VAL HB H N N 432 VAL HG11 H N N 433 VAL HG12 H N N 434 VAL HG13 H N N 435 VAL HG21 H N N 436 VAL HG22 H N N 437 VAL HG23 H N N 438 VAL HXT H N N 439 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DRM OP2 P sing N N 83 DRM OP2 HOP2 sing N N 84 DRM P OP1 doub N N 85 DRM P OP3 sing N N 86 DRM P "C6'" sing N N 87 DRM OP3 HOP3 sing N N 88 DRM "C6'" "O5'" sing N N 89 DRM "C6'" "H6'1" sing N N 90 DRM "C6'" "H6'2" sing N N 91 DRM "O5'" "C5'" sing N N 92 DRM "C5'" "C4'" sing N N 93 DRM "C5'" "C1'" sing N N 94 DRM "C5'" "H5'" sing N N 95 DRM "C4'" "C3'" sing N N 96 DRM "C4'" "H4'1" sing N N 97 DRM "C4'" "H4'2" sing N N 98 DRM "C3'" "C2'" sing N N 99 DRM "C3'" "H3'1" sing N N 100 DRM "C3'" "H3'2" sing N N 101 DRM "C2'" "C1'" sing N N 102 DRM "C2'" "H2'" sing N N 103 DRM "C2'" "H2''" sing N N 104 DRM "C1'" N1 sing N N 105 DRM "C1'" "H1'" sing N N 106 DRM N1 C6 sing N N 107 DRM N1 C2 sing N N 108 DRM C6 C5 doub N N 109 DRM C6 H6 sing N N 110 DRM C5 C4 sing N N 111 DRM C5 H5 sing N N 112 DRM C4 O4 doub N N 113 DRM C4 N3 sing N N 114 DRM N3 C2 sing N N 115 DRM N3 H3 sing N N 116 DRM C2 O2 doub N N 117 GLN N CA sing N N 118 GLN N H sing N N 119 GLN N H2 sing N N 120 GLN CA C sing N N 121 GLN CA CB sing N N 122 GLN CA HA sing N N 123 GLN C O doub N N 124 GLN C OXT sing N N 125 GLN CB CG sing N N 126 GLN CB HB2 sing N N 127 GLN CB HB3 sing N N 128 GLN CG CD sing N N 129 GLN CG HG2 sing N N 130 GLN CG HG3 sing N N 131 GLN CD OE1 doub N N 132 GLN CD NE2 sing N N 133 GLN NE2 HE21 sing N N 134 GLN NE2 HE22 sing N N 135 GLN OXT HXT sing N N 136 GLU N CA sing N N 137 GLU N H sing N N 138 GLU N H2 sing N N 139 GLU CA C sing N N 140 GLU CA CB sing N N 141 GLU CA HA sing N N 142 GLU C O doub N N 143 GLU C OXT sing N N 144 GLU CB CG sing N N 145 GLU CB HB2 sing N N 146 GLU CB HB3 sing N N 147 GLU CG CD sing N N 148 GLU CG HG2 sing N N 149 GLU CG HG3 sing N N 150 GLU CD OE1 doub N N 151 GLU CD OE2 sing N N 152 GLU OE2 HE2 sing N N 153 GLU OXT HXT sing N N 154 GLY N CA sing N N 155 GLY N H sing N N 156 GLY N H2 sing N N 157 GLY CA C sing N N 158 GLY CA HA2 sing N N 159 GLY CA HA3 sing N N 160 GLY C O doub N N 161 GLY C OXT sing N N 162 GLY OXT HXT sing N N 163 GOL C1 O1 sing N N 164 GOL C1 C2 sing N N 165 GOL C1 H11 sing N N 166 GOL C1 H12 sing N N 167 GOL O1 HO1 sing N N 168 GOL C2 O2 sing N N 169 GOL C2 C3 sing N N 170 GOL C2 H2 sing N N 171 GOL O2 HO2 sing N N 172 GOL C3 O3 sing N N 173 GOL C3 H31 sing N N 174 GOL C3 H32 sing N N 175 GOL O3 HO3 sing N N 176 HIS N CA sing N N 177 HIS N H sing N N 178 HIS N H2 sing N N 179 HIS CA C sing N N 180 HIS CA CB sing N N 181 HIS CA HA sing N N 182 HIS C O doub N N 183 HIS C OXT sing N N 184 HIS CB CG sing N N 185 HIS CB HB2 sing N N 186 HIS CB HB3 sing N N 187 HIS CG ND1 sing Y N 188 HIS CG CD2 doub Y N 189 HIS ND1 CE1 doub Y N 190 HIS ND1 HD1 sing N N 191 HIS CD2 NE2 sing Y N 192 HIS CD2 HD2 sing N N 193 HIS CE1 NE2 sing Y N 194 HIS CE1 HE1 sing N N 195 HIS NE2 HE2 sing N N 196 HIS OXT HXT sing N N 197 HOH O H1 sing N N 198 HOH O H2 sing N N 199 ILE N CA sing N N 200 ILE N H sing N N 201 ILE N H2 sing N N 202 ILE CA C sing N N 203 ILE CA CB sing N N 204 ILE CA HA sing N N 205 ILE C O doub N N 206 ILE C OXT sing N N 207 ILE CB CG1 sing N N 208 ILE CB CG2 sing N N 209 ILE CB HB sing N N 210 ILE CG1 CD1 sing N N 211 ILE CG1 HG12 sing N N 212 ILE CG1 HG13 sing N N 213 ILE CG2 HG21 sing N N 214 ILE CG2 HG22 sing N N 215 ILE CG2 HG23 sing N N 216 ILE CD1 HD11 sing N N 217 ILE CD1 HD12 sing N N 218 ILE CD1 HD13 sing N N 219 ILE OXT HXT sing N N 220 LEU N CA sing N N 221 LEU N H sing N N 222 LEU N H2 sing N N 223 LEU CA C sing N N 224 LEU CA CB sing N N 225 LEU CA HA sing N N 226 LEU C O doub N N 227 LEU C OXT sing N N 228 LEU CB CG sing N N 229 LEU CB HB2 sing N N 230 LEU CB HB3 sing N N 231 LEU CG CD1 sing N N 232 LEU CG CD2 sing N N 233 LEU CG HG sing N N 234 LEU CD1 HD11 sing N N 235 LEU CD1 HD12 sing N N 236 LEU CD1 HD13 sing N N 237 LEU CD2 HD21 sing N N 238 LEU CD2 HD22 sing N N 239 LEU CD2 HD23 sing N N 240 LEU OXT HXT sing N N 241 LYS N CA sing N N 242 LYS N H sing N N 243 LYS N H2 sing N N 244 LYS CA C sing N N 245 LYS CA CB sing N N 246 LYS CA HA sing N N 247 LYS C O doub N N 248 LYS C OXT sing N N 249 LYS CB CG sing N N 250 LYS CB HB2 sing N N 251 LYS CB HB3 sing N N 252 LYS CG CD sing N N 253 LYS CG HG2 sing N N 254 LYS CG HG3 sing N N 255 LYS CD CE sing N N 256 LYS CD HD2 sing N N 257 LYS CD HD3 sing N N 258 LYS CE NZ sing N N 259 LYS CE HE2 sing N N 260 LYS CE HE3 sing N N 261 LYS NZ HZ1 sing N N 262 LYS NZ HZ2 sing N N 263 LYS NZ HZ3 sing N N 264 LYS OXT HXT sing N N 265 MET N CA sing N N 266 MET N H sing N N 267 MET N H2 sing N N 268 MET CA C sing N N 269 MET CA CB sing N N 270 MET CA HA sing N N 271 MET C O doub N N 272 MET C OXT sing N N 273 MET CB CG sing N N 274 MET CB HB2 sing N N 275 MET CB HB3 sing N N 276 MET CG SD sing N N 277 MET CG HG2 sing N N 278 MET CG HG3 sing N N 279 MET SD CE sing N N 280 MET CE HE1 sing N N 281 MET CE HE2 sing N N 282 MET CE HE3 sing N N 283 MET OXT HXT sing N N 284 PHE N CA sing N N 285 PHE N H sing N N 286 PHE N H2 sing N N 287 PHE CA C sing N N 288 PHE CA CB sing N N 289 PHE CA HA sing N N 290 PHE C O doub N N 291 PHE C OXT sing N N 292 PHE CB CG sing N N 293 PHE CB HB2 sing N N 294 PHE CB HB3 sing N N 295 PHE CG CD1 doub Y N 296 PHE CG CD2 sing Y N 297 PHE CD1 CE1 sing Y N 298 PHE CD1 HD1 sing N N 299 PHE CD2 CE2 doub Y N 300 PHE CD2 HD2 sing N N 301 PHE CE1 CZ doub Y N 302 PHE CE1 HE1 sing N N 303 PHE CE2 CZ sing Y N 304 PHE CE2 HE2 sing N N 305 PHE CZ HZ sing N N 306 PHE OXT HXT sing N N 307 PRO N CA sing N N 308 PRO N CD sing N N 309 PRO N H sing N N 310 PRO CA C sing N N 311 PRO CA CB sing N N 312 PRO CA HA sing N N 313 PRO C O doub N N 314 PRO C OXT sing N N 315 PRO CB CG sing N N 316 PRO CB HB2 sing N N 317 PRO CB HB3 sing N N 318 PRO CG CD sing N N 319 PRO CG HG2 sing N N 320 PRO CG HG3 sing N N 321 PRO CD HD2 sing N N 322 PRO CD HD3 sing N N 323 PRO OXT HXT sing N N 324 SER N CA sing N N 325 SER N H sing N N 326 SER N H2 sing N N 327 SER CA C sing N N 328 SER CA CB sing N N 329 SER CA HA sing N N 330 SER C O doub N N 331 SER C OXT sing N N 332 SER CB OG sing N N 333 SER CB HB2 sing N N 334 SER CB HB3 sing N N 335 SER OG HG sing N N 336 SER OXT HXT sing N N 337 THR N CA sing N N 338 THR N H sing N N 339 THR N H2 sing N N 340 THR CA C sing N N 341 THR CA CB sing N N 342 THR CA HA sing N N 343 THR C O doub N N 344 THR C OXT sing N N 345 THR CB OG1 sing N N 346 THR CB CG2 sing N N 347 THR CB HB sing N N 348 THR OG1 HG1 sing N N 349 THR CG2 HG21 sing N N 350 THR CG2 HG22 sing N N 351 THR CG2 HG23 sing N N 352 THR OXT HXT sing N N 353 TRP N CA sing N N 354 TRP N H sing N N 355 TRP N H2 sing N N 356 TRP CA C sing N N 357 TRP CA CB sing N N 358 TRP CA HA sing N N 359 TRP C O doub N N 360 TRP C OXT sing N N 361 TRP CB CG sing N N 362 TRP CB HB2 sing N N 363 TRP CB HB3 sing N N 364 TRP CG CD1 doub Y N 365 TRP CG CD2 sing Y N 366 TRP CD1 NE1 sing Y N 367 TRP CD1 HD1 sing N N 368 TRP CD2 CE2 doub Y N 369 TRP CD2 CE3 sing Y N 370 TRP NE1 CE2 sing Y N 371 TRP NE1 HE1 sing N N 372 TRP CE2 CZ2 sing Y N 373 TRP CE3 CZ3 doub Y N 374 TRP CE3 HE3 sing N N 375 TRP CZ2 CH2 doub Y N 376 TRP CZ2 HZ2 sing N N 377 TRP CZ3 CH2 sing Y N 378 TRP CZ3 HZ3 sing N N 379 TRP CH2 HH2 sing N N 380 TRP OXT HXT sing N N 381 TYR N CA sing N N 382 TYR N H sing N N 383 TYR N H2 sing N N 384 TYR CA C sing N N 385 TYR CA CB sing N N 386 TYR CA HA sing N N 387 TYR C O doub N N 388 TYR C OXT sing N N 389 TYR CB CG sing N N 390 TYR CB HB2 sing N N 391 TYR CB HB3 sing N N 392 TYR CG CD1 doub Y N 393 TYR CG CD2 sing Y N 394 TYR CD1 CE1 sing Y N 395 TYR CD1 HD1 sing N N 396 TYR CD2 CE2 doub Y N 397 TYR CD2 HD2 sing N N 398 TYR CE1 CZ doub Y N 399 TYR CE1 HE1 sing N N 400 TYR CE2 CZ sing Y N 401 TYR CE2 HE2 sing N N 402 TYR CZ OH sing N N 403 TYR OH HH sing N N 404 TYR OXT HXT sing N N 405 VAL N CA sing N N 406 VAL N H sing N N 407 VAL N H2 sing N N 408 VAL CA C sing N N 409 VAL CA CB sing N N 410 VAL CA HA sing N N 411 VAL C O doub N N 412 VAL C OXT sing N N 413 VAL CB CG1 sing N N 414 VAL CB CG2 sing N N 415 VAL CB HB sing N N 416 VAL CG1 HG11 sing N N 417 VAL CG1 HG12 sing N N 418 VAL CG1 HG13 sing N N 419 VAL CG2 HG21 sing N N 420 VAL CG2 HG22 sing N N 421 VAL CG2 HG23 sing N N 422 VAL OXT HXT sing N N 423 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 '{[(1R,2S)-2-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)CYCLOPENTYL]OXY}METHYLPHOSPHONIC ACID' DRM 4 GLYCEROL GOL 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1MH9 _pdbx_initial_refinement_model.details 'PDB entry 1MH9' #