HEADER LIGASE 25-AUG-03 1Q9J TITLE STRUCTURE OF POLYKETIDE SYNTHASE ASSOCIATED PROTEIN 5 FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYKETIDE SYNTHASE ASSOCIATED PROTEIN 5; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PAPA5; PROBABLE PAPA5 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: PAPA5; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET T7; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSMT3 (MODIFIED PET28B) KEYWDS POLYKETIDE SYNTHASE ASSOCIATED PROTEIN; CONJUGATING ENZYME PAPA5; KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 4 GENOMICS, NYSGXRC, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR J.BUGLINO,K.C.ONWUEME,L.E.QUADRI,C.D.LIMA,S.K.BURLEY,NEW YORK SGX AUTHOR 2 RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 14-FEB-24 1Q9J 1 REMARK REVDAT 5 03-FEB-21 1Q9J 1 AUTHOR REVDAT 4 24-FEB-09 1Q9J 1 VERSN REVDAT 3 25-JAN-05 1Q9J 1 AUTHOR KEYWDS REMARK REVDAT 2 27-JUL-04 1Q9J 1 JRNL REMARK REVDAT 1 25-MAY-04 1Q9J 0 JRNL AUTH J.BUGLINO,K.C.ONWUEME,J.A.FERRERAS,L.E.QUADRI,C.D.LIMA JRNL TITL CRYSTAL STRUCTURE OF PAPA5, A PHTHIOCEROL DIMYCOCEROSYL JRNL TITL 2 TRANSFERASE FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF J.BIOL.CHEM. V. 279 30634 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15123643 JRNL DOI 10.1074/JBC.M404011200 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.7 REMARK 3 NUMBER OF REFLECTIONS : 33906 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.236 REMARK 3 FREE R VALUE : 0.295 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1669 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.92 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 77.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4418 REMARK 3 BIN R VALUE (WORKING SET) : 0.3640 REMARK 3 BIN FREE R VALUE : 0.4050 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.60 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 211 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.028 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5999 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 70.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.65000 REMARK 3 B22 (A**2) : 5.65000 REMARK 3 B33 (A**2) : -11.31000 REMARK 3 B12 (A**2) : 12.19000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.59 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.00 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.900 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.660 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.530 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.310 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.30 REMARK 3 BSOL : 41.15 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 1Q9J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020086. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-NOV-02; 27-MAR-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 5. REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : NSLS; NSLS REMARK 200 BEAMLINE : X9A; X4A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798; 0.9798 REMARK 200 MONOCHROMATOR : SI 111; SI 111 REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34892 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.750 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5-10% PEG 4000, 0.2M AMMONIUM ACETATE, REMARK 280 5% GLYCEROL, 0.02M DTT, 0.1M SODIUM CITRATE PH 5, PH 5., VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 26.84500 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 53.69000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 53.69000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 26.84500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2040 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 82 REMARK 465 THR A 83 REMARK 465 ALA A 84 REMARK 465 ALA A 85 REMARK 465 THR A 86 REMARK 465 ASN A 87 REMARK 465 GLY A 88 REMARK 465 SER A 89 REMARK 465 PRO A 90 REMARK 465 SER A 91 REMARK 465 GLY A 92 REMARK 465 ASN A 93 REMARK 465 GLN A 176 REMARK 465 GLY A 177 REMARK 465 LEU A 178 REMARK 465 SER A 179 REMARK 465 GLY A 180 REMARK 465 GLU A 192 REMARK 465 ILE A 193 REMARK 465 PRO A 194 REMARK 465 ALA A 195 REMARK 465 THR A 196 REMARK 465 GLU A 197 REMARK 465 THR A 198 REMARK 465 PRO A 199 REMARK 465 ALA A 200 REMARK 465 VAL A 201 REMARK 465 LEU A 202 REMARK 465 ALA A 203 REMARK 465 HIS A 204 REMARK 465 TRP A 419 REMARK 465 ILE A 420 REMARK 465 MET A 421 REMARK 465 GLU A 422 REMARK 465 MET B 1 REMARK 465 PHE B 2 REMARK 465 GLY B 82 REMARK 465 THR B 83 REMARK 465 ALA B 84 REMARK 465 ALA B 85 REMARK 465 THR B 86 REMARK 465 ASN B 87 REMARK 465 GLY B 88 REMARK 465 SER B 89 REMARK 465 PRO B 90 REMARK 465 SER B 91 REMARK 465 GLY B 92 REMARK 465 ASN B 93 REMARK 465 GLN B 176 REMARK 465 GLY B 177 REMARK 465 LEU B 178 REMARK 465 SER B 179 REMARK 465 GLY B 180 REMARK 465 TRP B 419 REMARK 465 ILE B 420 REMARK 465 MET B 421 REMARK 465 GLU B 422 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 559 O HOH B 560 1.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 533 O HOH B 556 4555 1.31 REMARK 500 O HOH B 538 O HOH B 545 4555 1.33 REMARK 500 O HOH B 534 O HOH B 570 4555 1.37 REMARK 500 O HOH B 532 O HOH B 554 4555 1.40 REMARK 500 O HOH B 571 O HOH B 571 4555 1.48 REMARK 500 O HOH B 557 O HOH B 567 4555 1.50 REMARK 500 O HOH B 535 O HOH B 571 4555 1.69 REMARK 500 O HOH B 530 O HOH B 558 4555 1.81 REMARK 500 O HOH B 552 O HOH B 567 4555 1.88 REMARK 500 O HOH B 558 O HOH B 566 4555 1.88 REMARK 500 O HOH B 527 O HOH B 538 4555 2.06 REMARK 500 O HOH B 559 O HOH B 559 4555 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 21 51.00 35.08 REMARK 500 PRO A 51 -6.14 -54.90 REMARK 500 ASP A 62 34.17 -75.90 REMARK 500 ASP A 70 -164.51 -119.81 REMARK 500 LEU A 96 140.25 165.03 REMARK 500 VAL A 102 -69.08 -106.03 REMARK 500 ARG A 112 -159.63 -138.69 REMARK 500 GLU A 113 -99.60 -56.13 REMARK 500 ALA A 127 141.68 -176.78 REMARK 500 ILE A 173 112.32 -26.95 REMARK 500 TYR A 189 28.51 48.75 REMARK 500 LEU A 207 133.89 -33.85 REMARK 500 ARG A 231 10.56 -67.05 REMARK 500 HIS A 233 19.22 -158.54 REMARK 500 ASN A 254 27.45 48.36 REMARK 500 HIS A 257 -4.78 56.79 REMARK 500 VAL A 271 -62.74 -94.31 REMARK 500 ALA A 273 -145.31 -47.29 REMARK 500 PRO A 274 118.90 -39.24 REMARK 500 PRO A 275 155.54 -47.40 REMARK 500 TYR A 290 110.81 -171.34 REMARK 500 ALA A 347 39.19 -93.33 REMARK 500 SER A 349 -170.82 -175.50 REMARK 500 PHE A 350 46.73 84.21 REMARK 500 ILE A 372 153.83 -38.50 REMARK 500 ARG B 8 -175.92 -172.71 REMARK 500 HIS B 50 61.93 -119.29 REMARK 500 SER B 55 -172.96 -171.74 REMARK 500 SER B 75 82.89 -174.51 REMARK 500 ASP B 99 100.91 -161.33 REMARK 500 GLN B 100 -12.87 -49.84 REMARK 500 VAL B 102 -72.92 -120.76 REMARK 500 HIS B 106 118.60 -168.68 REMARK 500 ARG B 112 -140.24 -103.45 REMARK 500 GLU B 113 -98.32 -78.63 REMARK 500 ARG B 174 -65.75 -122.72 REMARK 500 ALA B 195 62.27 -65.63 REMARK 500 GLU B 197 99.05 -67.96 REMARK 500 LEU B 202 55.45 -95.68 REMARK 500 PRO B 205 -173.14 -53.40 REMARK 500 LEU B 207 -65.15 -142.09 REMARK 500 SER B 219 151.30 -46.63 REMARK 500 GLU B 232 18.32 -64.36 REMARK 500 HIS B 233 17.10 -152.07 REMARK 500 ARG B 253 98.67 -67.77 REMARK 500 ASN B 254 49.93 -73.41 REMARK 500 PRO B 256 159.43 -45.47 REMARK 500 ASP B 267 96.80 -63.04 REMARK 500 ALA B 273 -102.17 -30.70 REMARK 500 THR B 282 -81.99 -56.39 REMARK 500 REMARK 500 THIS ENTRY HAS 59 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-T760 RELATED DB: TARGETDB DBREF 1Q9J A 1 422 UNP P96208 PAPA5_MYCTU 1 422 DBREF 1Q9J B 1 422 UNP P96208 PAPA5_MYCTU 1 422 SEQRES 1 A 422 MET PHE PRO GLY SER VAL ILE ARG LYS LEU SER HIS SER SEQRES 2 A 422 GLU GLU VAL PHE ALA GLN TYR GLU VAL PHE THR SER MET SEQRES 3 A 422 THR ILE GLN LEU ARG GLY VAL ILE ASP VAL ASP ALA LEU SEQRES 4 A 422 SER ASP ALA PHE ASP ALA LEU LEU GLU THR HIS PRO VAL SEQRES 5 A 422 LEU ALA SER HIS LEU GLU GLN SER SER ASP GLY GLY TRP SEQRES 6 A 422 ASN LEU VAL ALA ASP ASP LEU LEU HIS SER GLY ILE CYS SEQRES 7 A 422 VAL ILE ASP GLY THR ALA ALA THR ASN GLY SER PRO SER SEQRES 8 A 422 GLY ASN ALA GLU LEU ARG LEU ASP GLN SER VAL SER LEU SEQRES 9 A 422 LEU HIS LEU GLN LEU ILE LEU ARG GLU GLY GLY ALA GLU SEQRES 10 A 422 LEU THR LEU TYR LEU HIS HIS CYS MET ALA ASP GLY HIS SEQRES 11 A 422 HIS GLY ALA VAL LEU VAL ASP GLU LEU PHE SER ARG TYR SEQRES 12 A 422 THR ASP ALA VAL THR THR GLY ASP PRO GLY PRO ILE THR SEQRES 13 A 422 PRO GLN PRO THR PRO LEU SER MET GLU ALA VAL LEU ALA SEQRES 14 A 422 GLN ARG GLY ILE ARG LYS GLN GLY LEU SER GLY ALA GLU SEQRES 15 A 422 ARG PHE MET SER VAL MET TYR ALA TYR GLU ILE PRO ALA SEQRES 16 A 422 THR GLU THR PRO ALA VAL LEU ALA HIS PRO GLY LEU PRO SEQRES 17 A 422 GLN ALA VAL PRO VAL THR ARG LEU TRP LEU SER LYS GLN SEQRES 18 A 422 GLN THR SER ASP LEU MET ALA PHE GLY ARG GLU HIS ARG SEQRES 19 A 422 LEU SER LEU ASN ALA VAL VAL ALA ALA ALA ILE LEU LEU SEQRES 20 A 422 THR GLU TRP GLN LEU ARG ASN THR PRO HIS VAL PRO ILE SEQRES 21 A 422 PRO TYR VAL TYR PRO VAL ASP LEU ARG PHE VAL LEU ALA SEQRES 22 A 422 PRO PRO VAL ALA PRO THR GLU ALA THR ASN LEU LEU GLY SEQRES 23 A 422 ALA ALA SER TYR LEU ALA GLU ILE GLY PRO ASN THR ASP SEQRES 24 A 422 ILE VAL ASP LEU ALA SER ASP ILE VAL ALA THR LEU ARG SEQRES 25 A 422 ALA ASP LEU ALA ASN GLY VAL ILE GLN GLN SER GLY LEU SEQRES 26 A 422 HIS PHE GLY THR ALA PHE GLU GLY THR PRO PRO GLY LEU SEQRES 27 A 422 PRO PRO LEU VAL PHE CYS THR ASP ALA THR SER PHE PRO SEQRES 28 A 422 THR MET ARG THR PRO PRO GLY LEU GLU ILE GLU ASP ILE SEQRES 29 A 422 LYS GLY GLN PHE TYR CYS SER ILE SER VAL PRO LEU ASP SEQRES 30 A 422 LEU TYR SER CYS ALA VAL TYR ALA GLY GLN LEU ILE ILE SEQRES 31 A 422 GLU HIS HIS GLY HIS ILE ALA GLU PRO GLY LYS SER LEU SEQRES 32 A 422 GLU ALA ILE ARG SER LEU LEU CYS THR VAL PRO SER GLU SEQRES 33 A 422 TYR GLY TRP ILE MET GLU SEQRES 1 B 422 MET PHE PRO GLY SER VAL ILE ARG LYS LEU SER HIS SER SEQRES 2 B 422 GLU GLU VAL PHE ALA GLN TYR GLU VAL PHE THR SER MET SEQRES 3 B 422 THR ILE GLN LEU ARG GLY VAL ILE ASP VAL ASP ALA LEU SEQRES 4 B 422 SER ASP ALA PHE ASP ALA LEU LEU GLU THR HIS PRO VAL SEQRES 5 B 422 LEU ALA SER HIS LEU GLU GLN SER SER ASP GLY GLY TRP SEQRES 6 B 422 ASN LEU VAL ALA ASP ASP LEU LEU HIS SER GLY ILE CYS SEQRES 7 B 422 VAL ILE ASP GLY THR ALA ALA THR ASN GLY SER PRO SER SEQRES 8 B 422 GLY ASN ALA GLU LEU ARG LEU ASP GLN SER VAL SER LEU SEQRES 9 B 422 LEU HIS LEU GLN LEU ILE LEU ARG GLU GLY GLY ALA GLU SEQRES 10 B 422 LEU THR LEU TYR LEU HIS HIS CYS MET ALA ASP GLY HIS SEQRES 11 B 422 HIS GLY ALA VAL LEU VAL ASP GLU LEU PHE SER ARG TYR SEQRES 12 B 422 THR ASP ALA VAL THR THR GLY ASP PRO GLY PRO ILE THR SEQRES 13 B 422 PRO GLN PRO THR PRO LEU SER MET GLU ALA VAL LEU ALA SEQRES 14 B 422 GLN ARG GLY ILE ARG LYS GLN GLY LEU SER GLY ALA GLU SEQRES 15 B 422 ARG PHE MET SER VAL MET TYR ALA TYR GLU ILE PRO ALA SEQRES 16 B 422 THR GLU THR PRO ALA VAL LEU ALA HIS PRO GLY LEU PRO SEQRES 17 B 422 GLN ALA VAL PRO VAL THR ARG LEU TRP LEU SER LYS GLN SEQRES 18 B 422 GLN THR SER ASP LEU MET ALA PHE GLY ARG GLU HIS ARG SEQRES 19 B 422 LEU SER LEU ASN ALA VAL VAL ALA ALA ALA ILE LEU LEU SEQRES 20 B 422 THR GLU TRP GLN LEU ARG ASN THR PRO HIS VAL PRO ILE SEQRES 21 B 422 PRO TYR VAL TYR PRO VAL ASP LEU ARG PHE VAL LEU ALA SEQRES 22 B 422 PRO PRO VAL ALA PRO THR GLU ALA THR ASN LEU LEU GLY SEQRES 23 B 422 ALA ALA SER TYR LEU ALA GLU ILE GLY PRO ASN THR ASP SEQRES 24 B 422 ILE VAL ASP LEU ALA SER ASP ILE VAL ALA THR LEU ARG SEQRES 25 B 422 ALA ASP LEU ALA ASN GLY VAL ILE GLN GLN SER GLY LEU SEQRES 26 B 422 HIS PHE GLY THR ALA PHE GLU GLY THR PRO PRO GLY LEU SEQRES 27 B 422 PRO PRO LEU VAL PHE CYS THR ASP ALA THR SER PHE PRO SEQRES 28 B 422 THR MET ARG THR PRO PRO GLY LEU GLU ILE GLU ASP ILE SEQRES 29 B 422 LYS GLY GLN PHE TYR CYS SER ILE SER VAL PRO LEU ASP SEQRES 30 B 422 LEU TYR SER CYS ALA VAL TYR ALA GLY GLN LEU ILE ILE SEQRES 31 B 422 GLU HIS HIS GLY HIS ILE ALA GLU PRO GLY LYS SER LEU SEQRES 32 B 422 GLU ALA ILE ARG SER LEU LEU CYS THR VAL PRO SER GLU SEQRES 33 B 422 TYR GLY TRP ILE MET GLU FORMUL 3 HOH *226(H2 O) HELIX 1 1 SER A 11 TYR A 20 1 10 HELIX 2 2 ASP A 35 HIS A 50 1 16 HELIX 3 3 PRO A 51 LEU A 53 5 3 HELIX 4 4 CYS A 125 ALA A 127 5 3 HELIX 5 5 ASP A 128 THR A 149 1 22 HELIX 6 6 SER A 163 ARG A 171 1 9 HELIX 7 7 SER A 219 ARG A 231 1 13 HELIX 8 8 SER A 236 ASN A 254 1 19 HELIX 9 9 ASP A 299 GLY A 318 1 20 HELIX 10 10 GLY A 318 SER A 323 1 6 HELIX 11 11 HIS A 326 GLY A 333 5 8 HELIX 12 12 GLU A 398 VAL A 413 1 16 HELIX 13 13 SER B 11 TYR B 20 1 10 HELIX 14 14 ASP B 35 HIS B 50 1 16 HELIX 15 15 PRO B 51 LEU B 53 5 3 HELIX 16 16 ASP B 128 THR B 149 1 22 HELIX 17 17 SER B 163 ARG B 171 1 9 HELIX 18 18 PHE B 184 MET B 188 5 5 HELIX 19 19 SER B 219 GLU B 232 1 14 HELIX 20 20 SER B 236 ARG B 253 1 18 HELIX 21 21 ARG B 269 VAL B 271 5 3 HELIX 22 22 ASP B 299 ASN B 317 1 19 HELIX 23 23 GLY B 318 GLY B 324 1 7 HELIX 24 24 HIS B 326 GLY B 333 5 8 HELIX 25 25 PRO B 399 TYR B 417 1 19 SHEET 1 A 3 VAL A 6 LYS A 9 0 SHEET 2 A 3 TRP A 65 ALA A 69 -1 O LEU A 67 N ARG A 8 SHEET 3 A 3 SER A 55 GLN A 59 -1 N GLU A 58 O ASN A 66 SHEET 1 B 5 CYS A 78 ILE A 80 0 SHEET 2 B 5 LEU A 105 ILE A 110 1 O LEU A 109 N ILE A 80 SHEET 3 B 5 GLU A 117 HIS A 123 -1 O THR A 119 N GLN A 108 SHEET 4 B 5 PHE A 23 ARG A 31 -1 N THR A 24 O LEU A 122 SHEET 5 B 5 GLU A 360 PHE A 368 -1 O GLU A 362 N GLN A 29 SHEET 1 C 6 VAL A 213 LEU A 216 0 SHEET 2 C 6 GLN A 387 HIS A 393 -1 O HIS A 392 N THR A 214 SHEET 3 C 6 LEU A 378 TYR A 384 -1 N LEU A 378 O HIS A 393 SHEET 4 C 6 VAL A 342 THR A 345 1 N PHE A 343 O TYR A 379 SHEET 5 C 6 ILE A 260 ASP A 267 1 N VAL A 263 O VAL A 342 SHEET 6 C 6 LEU A 285 ALA A 292 -1 O ALA A 292 N ILE A 260 SHEET 1 D 3 VAL B 6 LYS B 9 0 SHEET 2 D 3 TRP B 65 ALA B 69 -1 O LEU B 67 N ARG B 8 SHEET 3 D 3 SER B 55 GLN B 59 -1 N GLU B 58 O ASN B 66 SHEET 1 E 6 CYS B 78 ILE B 80 0 SHEET 2 E 6 LEU B 105 LEU B 111 1 O LEU B 111 N ILE B 80 SHEET 3 E 6 GLY B 115 HIS B 123 -1 O THR B 119 N GLN B 108 SHEET 4 E 6 PHE B 23 GLY B 32 -1 N THR B 24 O LEU B 122 SHEET 5 E 6 LEU B 359 CYS B 370 -1 O TYR B 369 N PHE B 23 SHEET 6 E 6 GLN B 209 ALA B 210 -1 N GLN B 209 O CYS B 370 SHEET 1 F 6 ARG B 215 LEU B 216 0 SHEET 2 F 6 GLN B 387 GLY B 394 -1 O ILE B 390 N LEU B 216 SHEET 3 F 6 ASP B 377 TYR B 384 -1 N TYR B 384 O GLN B 387 SHEET 4 F 6 VAL B 342 THR B 345 1 N THR B 345 O CYS B 381 SHEET 5 F 6 ILE B 260 ASP B 267 1 N VAL B 263 O VAL B 342 SHEET 6 F 6 LEU B 285 ALA B 292 -1 O GLY B 286 N VAL B 266 CRYST1 172.982 172.982 80.535 90.00 90.00 120.00 P 31 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005781 0.003338 0.000000 0.00000 SCALE2 0.000000 0.006675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012417 0.00000