HEADER HYDROLASE 25-AUG-03 1Q9P TITLE SOLUTION STRUCTURE OF THE MATURE HIV-1 PROTEASE MONOMER COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 PROTEASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RETROPEPSIN; COMPND 5 EC: 3.4.23.16; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: POL; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HIV-1 PROTEASE, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.ISHIMA,D.A.TORCHIA,S.M.LYNCH,A.M.GRONENBORN,J.M.LOUIS REVDAT 3 27-OCT-21 1Q9P 1 REMARK SEQADV REVDAT 2 11-MAR-08 1Q9P 1 SOURCE DBREF SEQADV VERSN REVDAT 1 02-MAR-04 1Q9P 0 JRNL AUTH R.ISHIMA,D.A.TORCHIA,S.M.LYNCH,A.M.GRONENBORN,J.M.LOUIS JRNL TITL SOLUTION STRUCTURE OF THE MATURE HIV-1 PROTEASE MONOMER: JRNL TITL 2 INSIGHT INTO THE TERTIARY FOLD AND STABILITY OF A PRECURSOR JRNL REF J.BIOL.CHEM. V. 278 43311 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12933791 JRNL DOI 10.1074/JBC.M307549200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 1.0.6 REMARK 3 AUTHORS : BRUKER (XWINNMR), C.D.SCHWIETERS, J.J.KUSZEWSKI, REMARK 3 N.TJANDRA, AND G.M.CLORE (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 862 RESTRAINTS, 752 ARE NOE- REMARK 3 DERIVED REMARK 3 DISTANCE CONSTRAINTS, 47 DIHEDRAL ANGLE RESTRAINTS,30 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS, 63 DIPOLAR COUPLING CONSTRAINTS. REMARK 4 REMARK 4 1Q9P COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-SEP-03. REMARK 100 THE DEPOSITION ID IS D_1000020092. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : 5.8 REMARK 210 IONIC STRENGTH : 20MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5MM HIV-1 PROTEASE U-15N, 13C, REMARK 210 20MM PHOSPHATE BUFFER, 95% H2O, REMARK 210 5%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, X-PLOR 1.0.6 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 140.63 55.87 REMARK 500 1 PRO A 9 151.47 -42.36 REMARK 500 1 LEU A 10 -166.54 -59.82 REMARK 500 1 GLU A 34 154.72 -48.48 REMARK 500 1 PHE A 53 54.15 168.26 REMARK 500 1 GLN A 61 51.48 -144.63 REMARK 500 1 VAL A 82 -142.73 -126.91 REMARK 500 2 GLU A 34 152.21 -49.76 REMARK 500 2 MET A 36 110.00 -27.16 REMARK 500 2 LEU A 38 154.57 -32.10 REMARK 500 2 PRO A 39 -152.68 -57.69 REMARK 500 2 PHE A 53 91.62 -54.74 REMARK 500 2 ASP A 60 -149.80 -113.25 REMARK 500 2 GLN A 61 22.73 35.50 REMARK 500 2 ALA A 67 79.32 -20.41 REMARK 500 2 VAL A 82 -154.80 49.80 REMARK 500 2 ILE A 93 -39.50 61.66 REMARK 500 3 ALA A 28 -137.67 38.15 REMARK 500 3 MET A 36 100.02 39.68 REMARK 500 3 SER A 37 17.78 -146.84 REMARK 500 3 LEU A 38 141.81 179.14 REMARK 500 3 THR A 80 139.93 -39.74 REMARK 500 3 VAL A 82 -159.17 -127.94 REMARK 500 4 LYS A 7 -73.12 -102.95 REMARK 500 4 PRO A 9 -178.04 -44.83 REMARK 500 4 MET A 36 -103.94 -131.13 REMARK 500 4 PHE A 53 34.52 -172.68 REMARK 500 4 GLN A 61 54.91 -141.73 REMARK 500 4 THR A 80 100.96 -38.37 REMARK 500 4 PRO A 81 -4.59 -55.28 REMARK 500 5 GLU A 34 -74.91 -69.04 REMARK 500 5 SER A 37 40.22 163.90 REMARK 500 5 GLN A 61 63.81 -152.92 REMARK 500 5 ALA A 67 -59.75 62.15 REMARK 500 5 PRO A 79 20.05 -70.84 REMARK 500 5 VAL A 82 -150.04 29.97 REMARK 500 6 GLU A 35 -0.10 -51.40 REMARK 500 6 SER A 37 123.51 162.87 REMARK 500 6 LEU A 38 62.15 27.87 REMARK 500 6 ARG A 41 96.09 54.38 REMARK 500 6 PHE A 53 105.19 -48.37 REMARK 500 6 ALA A 67 -58.51 64.49 REMARK 500 6 VAL A 82 -158.17 38.62 REMARK 500 7 MET A 36 136.04 -172.73 REMARK 500 7 SER A 37 -127.33 50.93 REMARK 500 7 LEU A 38 112.99 59.13 REMARK 500 7 PRO A 39 167.49 -44.85 REMARK 500 7 GLN A 61 78.90 -153.76 REMARK 500 7 VAL A 82 -149.40 32.78 REMARK 500 7 ILE A 93 -75.60 -95.37 REMARK 500 REMARK 500 THIS ENTRY HAS 151 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1Q9P A 1 95 UNP P04587 POL_HV1B5 501 595 SEQADV 1Q9P LYS A 7 UNP P04587 GLN 507 ENGINEERED MUTATION SEQADV 1Q9P ILE A 33 UNP P04587 LEU 533 ENGINEERED MUTATION SEQADV 1Q9P ILE A 63 UNP P04587 LEU 563 ENGINEERED MUTATION SEQADV 1Q9P ALA A 67 UNP P04587 CYS 567 ENGINEERED MUTATION SEQADV 1Q9P ALA A 95 UNP P04587 CYS 595 ENGINEERED MUTATION SEQRES 1 A 95 PRO GLN ILE THR LEU TRP LYS ARG PRO LEU VAL THR ILE SEQRES 2 A 95 LYS ILE GLY GLY GLN LEU LYS GLU ALA LEU LEU ASP THR SEQRES 3 A 95 GLY ALA ASP ASP THR VAL ILE GLU GLU MET SER LEU PRO SEQRES 4 A 95 GLY ARG TRP LYS PRO LYS MET ILE GLY GLY ILE GLY GLY SEQRES 5 A 95 PHE ILE LYS VAL ARG GLN TYR ASP GLN ILE ILE ILE GLU SEQRES 6 A 95 ILE ALA GLY HIS LYS ALA ILE GLY THR VAL LEU VAL GLY SEQRES 7 A 95 PRO THR PRO VAL ASN ILE ILE GLY ARG ASN LEU LEU THR SEQRES 8 A 95 GLN ILE GLY ALA HELIX 1 1 GLY A 86 THR A 91 1 6 SHEET 1 A 8 LYS A 43 ILE A 47 0 SHEET 2 A 8 ILE A 54 ILE A 66 -1 O VAL A 56 N LYS A 45 SHEET 3 A 8 HIS A 69 VAL A 77 -1 O ALA A 71 N ILE A 64 SHEET 4 A 8 VAL A 32 ILE A 33 1 N ILE A 33 O LEU A 76 SHEET 5 A 8 ASN A 83 ILE A 85 -1 O ILE A 84 N VAL A 32 SHEET 6 A 8 GLN A 18 LEU A 24 1 N LEU A 23 O ILE A 85 SHEET 7 A 8 THR A 12 ILE A 15 -1 N ILE A 13 O LYS A 20 SHEET 8 A 8 ILE A 54 ILE A 66 -1 O GLU A 65 N LYS A 14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1