HEADER IMMUNE SYSTEM 25-AUG-03 1Q9T OBSLTE 24-AUG-11 1Q9T 3T77 TITLE S25-2- A(2-4)KDO DISACCHARIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: S25-2 FAB (IGG1K) LIGHT CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FAB LIGHT CHAIN KAPPA; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: S25-2 FAB (IGG1K) HEAVY CHAIN; COMPND 7 CHAIN: B; COMPND 8 FRAGMENT: FAB HEAVY CHAIN G1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS ANTIGEN-BINDING FRAGMENT, FAB, ANTI-CARBOHYDRATE, ANTI-LPS, ANTIBODY, KEYWDS 2 IMMUNOGLOBULIN, KDO, PROTEIN-CARBOHYDRATE COMPLEX, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE,S.V.EVANS REVDAT 3 24-AUG-11 1Q9T 1 OBSLTE VERSN REVDAT 2 24-FEB-09 1Q9T 1 VERSN REVDAT 1 27-JAN-04 1Q9T 0 JRNL AUTH H.P.NGUYEN,N.O.SETO,C.R.MACKENZIE,L.BRADE,P.KOSMA,H.BRADE, JRNL AUTH 2 S.V.EVANS JRNL TITL GERMLINE ANTIBODY RECOGNITION OF DISTINCT CARBOHYDRATE JRNL TITL 2 EPITOPES. JRNL REF NAT.STRUCT.BIOL. V. 10 1019 2003 JRNL REFN ISSN 1072-8368 JRNL PMID 14625588 JRNL DOI 10.1038/NSB1014 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.9 REMARK 3 NUMBER OF REFLECTIONS : 47572 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4818 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.74 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.80 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3919 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE : 0.3720 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 431 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 334 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 10.73000 REMARK 3 B22 (A**2) : -6.70000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.23 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.60 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : CNS BULK SOLVENT MODEL USED REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 45.08 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : KDO6.PAR REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : KDO6.TOP REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1Q9T COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-SEP-03. REMARK 100 THE RCSB ID CODE IS RCSB020096. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X8C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.15 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47572 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 19.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS 1.1 REMARK 200 STARTING MODEL: PDB ENTRY 1Q9R, S25-2 A(2-8) KDO DISACCHARIDE REMARK 200 COMPLEX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: KDO DISACCHARIDE, MAGNESIUM CHLORIDE, REMARK 280 ZINC CHLORIDE, ETHYLENE GLYCOL, PEG 4000, TRIS, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.15000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.90000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 65.15000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.90000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -81.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 KDA B 302 O6 KDO B 303 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 212 O HOH B 437 2464 2.13 REMARK 500 OH TYR A 49 OE2 GLU A 212 2465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 51 -44.16 68.78 REMARK 500 SER A 77 60.57 37.35 REMARK 500 ALA A 84 177.68 175.91 REMARK 500 LEU A 94 -138.35 57.46 REMARK 500 ASN A 189 -63.42 -107.16 REMARK 500 ASP B 95 -156.34 -103.71 REMARK 500 HIS B 96 150.98 -36.98 REMARK 500 ARG B 100B 150.44 177.77 REMARK 500 ALA B 127 -21.67 -168.83 REMARK 500 ASN B 131 -162.84 -117.87 REMARK 500 ASP B 212 -121.71 -96.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 371 DISTANCE = 7.79 ANGSTROMS REMARK 525 HOH B 408 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 214 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 397 O REMARK 620 2 PHE A 97 N 95.6 REMARK 620 3 HOH B 338 O 116.6 134.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 215 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 101 OG1 REMARK 620 2 GLN A 6 OE1 83.0 REMARK 620 3 SER A 22 O 119.4 108.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 216 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 137 OD1 REMARK 620 2 ASN A 137 ND2 47.7 REMARK 620 3 HIS B 162 NE2 76.4 117.5 REMARK 620 4 HOH B 306 O 90.9 74.0 83.0 REMARK 620 5 HOH A 276 O 82.6 106.3 88.4 170.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 217 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 1 O REMARK 620 2 ASP A 1 OD2 86.0 REMARK 620 3 HOH A 387 O 76.0 84.9 REMARK 620 4 ASP A 1 N 86.0 87.4 160.9 REMARK 620 5 HOH A 386 O 120.2 153.0 106.6 87.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 218 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 188 NE2 REMARK 620 2 HOH A 301 O 112.8 REMARK 620 3 GLU A 184 OE2 91.2 99.4 REMARK 620 4 GLU B 56 OE2 131.9 93.5 124.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE KDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 214 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 215 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 216 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 217 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 218 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1Q9K RELATED DB: PDB REMARK 900 SAME PROTEIN, BUT HERE LIGANDED WITH A(2-4) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9L RELATED DB: PDB REMARK 900 SAME PROTEIN, BUT HERE LIGANDED WITH A(2-4) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9Q RELATED DB: PDB REMARK 900 SAME PROTEIN, BUT HERE LIGANDED WITH A(2-4) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9R RELATED DB: PDB REMARK 900 SAME PROTEIN, BUT HERE LIGANDED WITH A(2-4) KDO DISACCHARIDE REMARK 900 RELATED ID: 1Q9O RELATED DB: PDB REMARK 900 RELATED AB S45-18 HAS MORE MUTATIONS FROM GERMLINE THAN REMARK 900 DOES S25-2 REMARK 900 RELATED ID: 1Q9V RELATED DB: PDB REMARK 900 AB S25-2 LIGANDED WITH KDO MONOSACCHARIDE REMARK 900 RELATED ID: 1Q9W RELATED DB: PDB REMARK 900 S45-18 FAB PENTASACCHARIDE BISPHOSPHATE COMPLEX REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE OF THE PROTEIN WAS NOT DEPOSITED REMARK 999 INTO ANY SEQUENCE DATABASE. DBREF 1Q9T A 1 213 PDB 1Q9T 1Q9T 1 213 DBREF 1Q9T B 1 213 PDB 1Q9T 1Q9T 1 213 SEQRES 1 A 219 ASP ILE VAL MET SER GLN SER PRO SER SER LEU ALA VAL SEQRES 2 A 219 SER ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 A 219 GLN SER LEU LEU ASN SER ARG THR ARG LYS ASN TYR LEU SEQRES 4 A 219 ALA TRP TYR GLN GLN LYS PRO GLY GLN SER PRO LYS LEU SEQRES 5 A 219 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 A 219 ASP ARG PHE THR GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 A 219 LEU THR ILE THR SER VAL GLN ALA GLU ASP LEU ALA VAL SEQRES 8 A 219 TYR TYR CYS LYS GLN SER TYR ASN LEU ARG THR PHE GLY SEQRES 9 A 219 GLY GLY THR LYS LEU GLU ILE LYS ARG ALA ASP ALA ALA SEQRES 10 A 219 PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU SEQRES 11 A 219 THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN SEQRES 12 A 219 PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP SEQRES 13 A 219 GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR SEQRES 14 A 219 ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SER SEQRES 15 A 219 THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SEQRES 16 A 219 SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER SEQRES 17 A 219 PRO ILE VAL LYS SER PHE ASN ARG ASN GLU CYS SEQRES 1 B 224 GLU VAL LYS LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 224 SER GLY GLY SER LEU ARG LEU SER CYS ALA THR SER GLY SEQRES 3 B 224 PHE THR PHE THR ASP TYR TYR MET SER TRP VAL ARG GLN SEQRES 4 B 224 PRO PRO GLY LYS ALA LEU GLU TRP LEU GLY PHE ILE ARG SEQRES 5 B 224 ASN LYS ALA ASN GLY TYR THR THR GLU TYR SER PRO SER SEQRES 6 B 224 VAL LYS GLY ARG PHE THR ILE SER ARG ASP ASN SER GLN SEQRES 7 B 224 SER ILE LEU TYR LEU GLN MET ASN THR LEU ARG ALA GLU SEQRES 8 B 224 ASP SER ALA THR TYR TYR CYS ALA ARG ASP HIS ASP GLY SEQRES 9 B 224 TYR TYR GLU ARG PHE SER TYR TRP GLY GLN GLY THR LEU SEQRES 10 B 224 VAL THR VAL SER ALA ALA LYS THR THR PRO PRO SER VAL SEQRES 11 B 224 TYR PRO LEU ALA PRO GLY SER ALA ALA GLN THR ASN SER SEQRES 12 B 224 MET VAL THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO SEQRES 13 B 224 GLU PRO VAL THR VAL THR TRP ASN SER GLY SER LEU SER SEQRES 14 B 224 SER GLY VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP SEQRES 15 B 224 LEU TYR THR LEU SER SER SER VAL THR VAL PRO SER SER SEQRES 16 B 224 THR TRP PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS SEQRES 17 B 224 PRO ALA SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO SEQRES 18 B 224 ARG ASP CYS HET KDA B 302 19 HET KDO B 303 15 HET MG A 214 1 HET MG A 215 1 HET MG A 216 1 HET MG A 217 1 HET ZN A 218 1 HETNAM KDA (3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID)-2-O-ALLYL HETNAM KDO 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID HETNAM MG MAGNESIUM ION HETNAM ZN ZINC ION FORMUL 3 KDA C11 H18 O8 FORMUL 3 KDO C8 H14 O8 FORMUL 4 MG 4(MG 2+) FORMUL 8 ZN ZN 2+ FORMUL 9 HOH *334(H2 O) HELIX 1 1 GLN A 79 LEU A 83 5 5 HELIX 2 2 SER A 120 THR A 125 1 6 HELIX 3 3 LYS A 182 GLU A 186 1 5 HELIX 4 4 ASN A 211 CYS A 213 5 3 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASN B 52A GLY B 52E 5 5 HELIX 7 7 ARG B 83 SER B 87 5 5 HELIX 8 8 SER B 154 SER B 156 5 3 HELIX 9 9 PRO B 198 SER B 201 5 4 SHEET 1 A 4 MET A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 SER A 25 -1 O LYS A 24 N SER A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N THR A 63 O THR A 74 SHEET 1 B 6 SER A 10 SER A 14 0 SHEET 2 B 6 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 B 6 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 B 6 LEU A 33 GLN A 38 -1 N TYR A 36 O TYR A 87 SHEET 5 B 6 LYS A 45 TYR A 49 -1 O LEU A 47 N TRP A 35 SHEET 6 B 6 THR A 53 ARG A 54 -1 O THR A 53 N TYR A 49 SHEET 1 C 4 SER A 10 SER A 14 0 SHEET 2 C 4 THR A 101 LYS A 106 1 O GLU A 104 N LEU A 11 SHEET 3 C 4 ALA A 84 GLN A 90 -1 N ALA A 84 O LEU A 103 SHEET 4 C 4 THR A 96 PHE A 97 -1 O THR A 96 N GLN A 90 SHEET 1 D 2 LEU A 30 ASN A 30A 0 SHEET 2 D 2 LYS A 30F ASN A 31 -1 O LYS A 30F N ASN A 30A SHEET 1 E 4 THR A 113 PHE A 117 0 SHEET 2 E 4 GLY A 128 PHE A 138 -1 O ASN A 136 N THR A 113 SHEET 3 E 4 TYR A 172 THR A 181 -1 O LEU A 178 N VAL A 131 SHEET 4 E 4 VAL A 158 TRP A 162 -1 N LEU A 159 O THR A 177 SHEET 1 F 4 SER A 152 ARG A 154 0 SHEET 2 F 4 ASN A 144 ILE A 149 -1 N ILE A 149 O SER A 152 SHEET 3 F 4 SER A 190 THR A 196 -1 O THR A 196 N ASN A 144 SHEET 4 F 4 ILE A 204 ASN A 209 -1 O ILE A 204 N ALA A 195 SHEET 1 G 4 LYS B 3 SER B 7 0 SHEET 2 G 4 LEU B 18 SER B 25 -1 O SER B 25 N LYS B 3 SHEET 3 G 4 ILE B 75 MET B 80 -1 O LEU B 76 N CYS B 22 SHEET 4 G 4 PHE B 65 ASP B 70 -1 N THR B 66 O GLN B 79 SHEET 1 H 6 LEU B 11 VAL B 12 0 SHEET 2 H 6 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 H 6 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 107 SHEET 4 H 6 MET B 34 GLN B 39 -1 N VAL B 37 O TYR B 91 SHEET 5 H 6 GLU B 46 ILE B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 H 6 THR B 55 TYR B 57 -1 O GLU B 56 N PHE B 50 SHEET 1 I 4 LEU B 11 VAL B 12 0 SHEET 2 I 4 THR B 105 VAL B 109 1 O THR B 108 N VAL B 12 SHEET 3 I 4 ALA B 88 ARG B 94 -1 N ALA B 88 O VAL B 107 SHEET 4 I 4 TYR B 100E TRP B 101 -1 O TYR B 100E N ARG B 94 SHEET 1 J 4 SER B 118 LEU B 122 0 SHEET 2 J 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 J 4 LEU B 172 PRO B 182 -1 O LEU B 175 N VAL B 140 SHEET 4 J 4 VAL B 161 THR B 163 -1 N HIS B 162 O SER B 178 SHEET 1 K 4 SER B 118 LEU B 122 0 SHEET 2 K 4 MET B 133 TYR B 143 -1 O GLY B 137 N LEU B 122 SHEET 3 K 4 LEU B 172 PRO B 182 -1 O LEU B 175 N VAL B 140 SHEET 4 K 4 VAL B 167 GLN B 169 -1 N GLN B 169 O LEU B 172 SHEET 1 L 3 THR B 149 TRP B 152 0 SHEET 2 L 3 THR B 192 HIS B 197 -1 O ASN B 194 N THR B 151 SHEET 3 L 3 THR B 202 LYS B 207 -1 O VAL B 204 N VAL B 195 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.06 SSBOND 2 CYS A 133 CYS A 193 1555 1555 2.04 SSBOND 3 CYS B 22 CYS B 92 1555 1555 2.03 SSBOND 4 CYS B 138 CYS B 193 1555 1555 2.04 LINK O4 KDA B 302 C2 KDO B 303 1555 1555 1.48 LINK MG MG A 214 O HOH B 397 1555 1555 2.90 LINK MG MG A 214 N PHE A 97 1555 1555 3.14 LINK MG MG A 214 O HOH B 338 1555 1555 2.76 LINK MG MG A 215 OG1 THR A 101 1555 1555 2.83 LINK MG MG A 215 OE1 GLN A 6 1555 1555 2.89 LINK MG MG A 215 O SER A 22 1555 1555 2.88 LINK MG MG A 216 OD1 ASN A 137 1555 1555 2.29 LINK MG MG A 216 ND2 ASN A 137 1555 1555 3.02 LINK MG MG A 216 NE2 HIS B 162 1555 1555 2.36 LINK MG MG A 216 O HOH B 306 1555 1555 1.99 LINK MG MG A 216 O HOH A 276 1555 1555 2.92 LINK MG MG A 217 O ASP A 1 1555 1555 2.14 LINK MG MG A 217 OD2 ASP A 1 1555 1555 1.93 LINK MG MG A 217 O HOH A 387 1555 1555 1.90 LINK MG MG A 217 N ASP A 1 1555 1555 1.92 LINK MG MG A 217 O HOH A 386 1555 1555 1.82 LINK ZN ZN A 218 NE2 HIS A 188 1555 1555 1.87 LINK ZN ZN A 218 O HOH A 301 1555 1555 2.24 LINK ZN ZN A 218 OE2 GLU A 184 1555 1555 2.02 LINK ZN ZN A 218 OE2 GLU B 56 1555 2564 2.03 CISPEP 1 SER A 7 PRO A 8 0 -0.72 CISPEP 2 TYR A 139 PRO A 140 0 -0.05 CISPEP 3 PHE B 144 PRO B 145 0 -0.60 CISPEP 4 GLU B 146 PRO B 147 0 0.16 CISPEP 5 TRP B 186 PRO B 187 0 0.35 SITE 1 AC1 7 ARG A 30C ASN A 156 THR A 181 TYR B 33 SITE 2 AC1 7 ASN B 52D KDO B 303 HOH B 456 SITE 1 AC2 14 TYR A 32 SER A 91 TYR A 92 ARG A 95 SITE 2 AC2 14 HOH A 219 TYR B 33 PHE B 50 ARG B 52 SITE 3 AC2 14 GLU B 100A KDA B 302 HOH B 304 HOH B 305 SITE 4 AC2 14 HOH B 441 HOH B 442 SITE 1 AC3 6 THR A 96 PHE A 97 GLU B 46 TRP B 47 SITE 2 AC3 6 HOH B 338 HOH B 397 SITE 1 AC4 6 GLN A 6 SER A 7 MET A 21 SER A 22 SITE 2 AC4 6 TRP A 35 THR A 101 SITE 1 AC5 4 ASN A 137 HOH A 276 HIS B 162 HOH B 306 SITE 1 AC6 3 ASP A 1 HOH A 386 HOH A 387 SITE 1 AC7 4 GLU A 184 HIS A 188 HOH A 301 GLU B 56 CRYST1 45.900 81.800 130.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021786 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007675 0.00000