HEADER HYDROLASE 02-AUG-96 1QAS TITLE 1-PHOSPHATIDYLINOSITOL-4,5-BISPHOSPHATE PHOSPHODIESTERASE DELTA 1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOLIPASE C DELTA-1; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PLC-DELTA-1; COMPND 5 EC: 3.1.4.11; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: PHOSHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C DELTA-1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: SEED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS HYDROLASE, LIPID DEGRADATION, TRANSDUCER, CALCIUM-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR J.A.GROBLER,J.H.HURLEY REVDAT 5 03-APR-24 1QAS 1 REMARK REVDAT 4 14-FEB-24 1QAS 1 REMARK REVDAT 3 24-FEB-09 1QAS 1 VERSN REVDAT 2 01-APR-03 1QAS 1 JRNL REVDAT 1 12-FEB-97 1QAS 0 JRNL AUTH J.A.GROBLER,L.O.ESSEN,R.L.WILLIAMS,J.H.HURLEY JRNL TITL C2 DOMAIN CONFORMATIONAL CHANGES IN PHOSPHOLIPASE C-DELTA 1. JRNL REF NAT.STRUCT.BIOL. V. 3 788 1996 JRNL REFN ISSN 1072-8368 JRNL PMID 8784353 JRNL DOI 10.1038/NSB0996-788 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH L.O.ESSEN,O.PERISIC,R.CHEUNG,M.KATAN,R.L.WILLIAMS REMARK 1 TITL CRYSTAL STRUCTURE OF A MAMMALIAN PHOSPHOINOSITIDE-SPECIFIC REMARK 1 TITL 2 PHOSPHOLIPASE C DELTA REMARK 1 REF NATURE V. 380 595 1996 REMARK 1 REFN ISSN 0028-0836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.A.GROBLER,J.H.HURLEY REMARK 1 TITL EXPRESSION, CHARACTERIZATION, AND CRYSTALLIZATION OF THE REMARK 1 TITL 2 CATALYTIC CORE OF RAT PHOSPHATIDYLINOSITIDE-SPECIFIC REMARK 1 TITL 3 PHOSPHOLIPASE C DELTA 1 REMARK 1 REF PROTEIN SCI. V. 5 680 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 40803 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE R REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2173 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.48 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 44.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1877 REMARK 3 BIN R VALUE (WORKING SET) : 0.3180 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 3.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7969 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 266 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.90 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.377 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; 300 REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; 1.0 REMARK 3 GROUP 2 POSITIONAL (A) : NULL ; 300 REMARK 3 GROUP 2 B-FACTOR (A**2) : NULL ; 1.0 REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QAS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175889. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : OCT-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0-6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH2R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47893 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 60.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 86.4 REMARK 200 DATA REDUNDANCY : 1.760 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : 0.06300 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 44.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.42 REMARK 200 R MERGE FOR SHELL (I) : 0.29600 REMARK 200 R SYM FOR SHELL (I) : 0.29600 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: CUBIC PHOSPHOLIPASE C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NEEDLE CLUSTERS WERE FORMED BY MIXING REMARK 280 EQUAL VOLUMES OF PROTEIN SOLUTION (22 MG/ML) WITH A WELL REMARK 280 SOLUTION CONSISTING OF 0.1 M NA MES (PH 6.0), 0.2 M LICL, 20% REMARK 280 GLYCEROL, AND 12-14 % PEG 8000. FRAGMENTS OF THE NEEDLE CLUSTERS REMARK 280 WERE USED TO SEED HANGING DROPS. THE WELL SOLUTION USED FOR THE REMARK 280 SEEDING EXPERIMENTS WAS ADJUSTED TO 0.1M NA MES (PH 6.5), 0.2 M REMARK 280 LICL, 20 % GLYCEROL, AND 6-8 % PEG 8000., CLUSTERS FORMED BY REMARK 280 MIXING - USED AS SEEDS IN HANGING DROPS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 135 REMARK 465 ASP A 136 REMARK 465 GLN A 137 REMARK 465 ARG A 138 REMARK 465 GLN A 139 REMARK 465 LYS A 140 REMARK 465 LEU A 141 REMARK 465 GLN A 142 REMARK 465 HIS A 143 REMARK 465 TRP A 144 REMARK 465 ILE A 145 REMARK 465 HIS A 146 REMARK 465 SER A 147 REMARK 465 CYS A 148 REMARK 465 LEU A 149 REMARK 465 ARG A 150 REMARK 465 LYS A 151 REMARK 465 ALA A 152 REMARK 465 ASP A 153 REMARK 465 LYS A 154 REMARK 465 ASN A 155 REMARK 465 LYS A 156 REMARK 465 ASP A 157 REMARK 465 ASN A 158 REMARK 465 LYS A 159 REMARK 465 MET A 160 REMARK 465 ASN A 161 REMARK 465 PHE A 162 REMARK 465 LYS A 163 REMARK 465 GLU A 164 REMARK 465 LEU A 165 REMARK 465 LYS A 166 REMARK 465 ASP A 167 REMARK 465 PHE A 168 REMARK 465 LEU A 169 REMARK 465 LYS A 170 REMARK 465 GLU A 171 REMARK 465 LEU A 172 REMARK 465 ASN A 173 REMARK 465 ILE A 174 REMARK 465 GLN A 175 REMARK 465 VAL A 176 REMARK 465 ASP A 177 REMARK 465 ASP A 178 REMARK 465 GLY A 179 REMARK 465 TYR A 180 REMARK 465 ALA A 181 REMARK 465 ARG A 182 REMARK 465 LYS A 183 REMARK 465 ILE A 184 REMARK 465 PHE A 185 REMARK 465 ARG A 186 REMARK 465 GLU A 187 REMARK 465 CYS A 188 REMARK 465 ASP A 189 REMARK 465 HIS A 190 REMARK 465 SER A 191 REMARK 465 GLN A 192 REMARK 465 THR A 193 REMARK 465 ASP A 194 REMARK 465 SER A 195 REMARK 465 LEU A 196 REMARK 465 GLU A 197 REMARK 465 ASP A 198 REMARK 465 GLU A 199 REMARK 465 GLU A 200 REMARK 465 ILE A 201 REMARK 465 GLU A 202 REMARK 465 THR A 203 REMARK 465 PHE A 204 REMARK 465 LEU A 445 REMARK 465 LEU A 446 REMARK 465 PRO A 447 REMARK 465 ALA A 448 REMARK 465 GLY A 449 REMARK 465 GLY A 450 REMARK 465 GLU A 451 REMARK 465 ASN A 452 REMARK 465 GLY A 453 REMARK 465 SER A 454 REMARK 465 GLU A 455 REMARK 465 ALA A 456 REMARK 465 THR A 457 REMARK 465 ASP A 458 REMARK 465 VAL A 459 REMARK 465 SER A 460 REMARK 465 ASP A 461 REMARK 465 GLU A 462 REMARK 465 VAL A 463 REMARK 465 GLU A 464 REMARK 465 ALA A 465 REMARK 465 ALA A 466 REMARK 465 GLU A 467 REMARK 465 MET A 468 REMARK 465 GLU A 469 REMARK 465 ASP A 470 REMARK 465 GLU A 471 REMARK 465 ALA A 472 REMARK 465 VAL A 473 REMARK 465 ARG A 474 REMARK 465 SER A 475 REMARK 465 GLN A 476 REMARK 465 VAL A 477 REMARK 465 GLN A 478 REMARK 465 HIS A 479 REMARK 465 LYS A 480 REMARK 465 PRO A 481 REMARK 465 LYS A 482 REMARK 465 GLU A 483 REMARK 465 ASP A 484 REMARK 465 LYS A 485 REMARK 465 LEU A 486 REMARK 465 LYS A 646 REMARK 465 ASN A 647 REMARK 465 LYS A 648 REMARK 465 ASN A 649 REMARK 465 SER A 650 REMARK 465 MET B 135 REMARK 465 ASP B 136 REMARK 465 GLN B 137 REMARK 465 ARG B 138 REMARK 465 GLN B 139 REMARK 465 LYS B 140 REMARK 465 LEU B 141 REMARK 465 GLN B 142 REMARK 465 HIS B 143 REMARK 465 TRP B 144 REMARK 465 ILE B 145 REMARK 465 HIS B 146 REMARK 465 SER B 147 REMARK 465 CYS B 148 REMARK 465 LEU B 149 REMARK 465 ARG B 150 REMARK 465 LYS B 151 REMARK 465 ALA B 152 REMARK 465 ASP B 153 REMARK 465 LYS B 154 REMARK 465 ASN B 155 REMARK 465 LYS B 156 REMARK 465 ASP B 157 REMARK 465 ASN B 158 REMARK 465 LYS B 159 REMARK 465 MET B 160 REMARK 465 ASN B 161 REMARK 465 PHE B 162 REMARK 465 LYS B 163 REMARK 465 GLU B 164 REMARK 465 LEU B 165 REMARK 465 LYS B 166 REMARK 465 ASP B 167 REMARK 465 PHE B 168 REMARK 465 LEU B 169 REMARK 465 LYS B 170 REMARK 465 GLU B 171 REMARK 465 LEU B 172 REMARK 465 ASN B 173 REMARK 465 ILE B 174 REMARK 465 GLN B 175 REMARK 465 VAL B 176 REMARK 465 ASP B 177 REMARK 465 ASP B 178 REMARK 465 GLY B 179 REMARK 465 TYR B 180 REMARK 465 ALA B 181 REMARK 465 ARG B 182 REMARK 465 LYS B 183 REMARK 465 ILE B 184 REMARK 465 PHE B 185 REMARK 465 ARG B 186 REMARK 465 GLU B 187 REMARK 465 CYS B 188 REMARK 465 ASP B 189 REMARK 465 HIS B 190 REMARK 465 SER B 191 REMARK 465 GLN B 192 REMARK 465 THR B 193 REMARK 465 ASP B 194 REMARK 465 SER B 195 REMARK 465 LEU B 196 REMARK 465 GLU B 197 REMARK 465 ASP B 198 REMARK 465 GLU B 199 REMARK 465 GLU B 200 REMARK 465 ILE B 201 REMARK 465 GLU B 202 REMARK 465 THR B 203 REMARK 465 PHE B 204 REMARK 465 TYR B 205 REMARK 465 LEU B 446 REMARK 465 PRO B 447 REMARK 465 ALA B 448 REMARK 465 GLY B 449 REMARK 465 GLY B 450 REMARK 465 GLU B 451 REMARK 465 ASN B 452 REMARK 465 GLY B 453 REMARK 465 SER B 454 REMARK 465 GLU B 455 REMARK 465 ALA B 456 REMARK 465 THR B 457 REMARK 465 ASP B 458 REMARK 465 VAL B 459 REMARK 465 SER B 460 REMARK 465 ASP B 461 REMARK 465 GLU B 462 REMARK 465 VAL B 463 REMARK 465 GLU B 464 REMARK 465 ALA B 465 REMARK 465 ALA B 466 REMARK 465 GLU B 467 REMARK 465 MET B 468 REMARK 465 GLU B 469 REMARK 465 ASP B 470 REMARK 465 GLU B 471 REMARK 465 ALA B 472 REMARK 465 VAL B 473 REMARK 465 ARG B 474 REMARK 465 SER B 475 REMARK 465 GLN B 476 REMARK 465 VAL B 477 REMARK 465 GLN B 478 REMARK 465 HIS B 479 REMARK 465 LYS B 480 REMARK 465 PRO B 481 REMARK 465 LYS B 482 REMARK 465 GLU B 483 REMARK 465 ASP B 484 REMARK 465 GLY B 511 REMARK 465 THR B 512 REMARK 465 SER B 513 REMARK 465 LYS B 646 REMARK 465 ASN B 647 REMARK 465 LYS B 648 REMARK 465 ASN B 649 REMARK 465 SER B 650 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 643 CG CD CE NZ REMARK 470 GLU B 245 CG CD OE1 OE2 REMARK 470 LYS B 485 CG CD CE NZ REMARK 470 LEU B 486 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 331 CD - NE - CZ ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 331 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 GLY A 443 N - CA - C ANGL. DEV. = -16.1 DEGREES REMARK 500 MET B 207 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 331 CD - NE - CZ ANGL. DEV. = 9.3 DEGREES REMARK 500 ARG B 331 NE - CZ - NH1 ANGL. DEV. = 6.0 DEGREES REMARK 500 ARG B 331 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 208 -70.83 -51.46 REMARK 500 THR A 209 -125.59 -86.57 REMARK 500 ARG A 242 45.53 37.22 REMARK 500 ASN A 312 57.22 35.01 REMARK 500 GLU A 317 -122.71 -141.22 REMARK 500 THR A 422 -25.07 -147.43 REMARK 500 PRO A 426 -178.81 -64.38 REMARK 500 SER A 508 -28.42 -178.59 REMARK 500 SER A 509 179.88 70.40 REMARK 500 PRO A 510 21.48 -64.02 REMARK 500 THR A 512 92.76 28.81 REMARK 500 SER A 513 86.97 157.84 REMARK 500 ILE A 574 72.49 -108.75 REMARK 500 ILE A 636 -72.90 -74.33 REMARK 500 LYS A 643 74.10 -151.31 REMARK 500 VAL A 652 -121.60 -153.19 REMARK 500 ASP A 653 82.32 -21.42 REMARK 500 ASN A 677 65.14 38.06 REMARK 500 ASN A 678 98.44 -162.88 REMARK 500 ASN A 681 41.61 -142.40 REMARK 500 SER A 711 -4.99 167.38 REMARK 500 LYS A 712 140.03 71.46 REMARK 500 ASN A 724 6.93 -64.47 REMARK 500 GLU B 245 137.65 -37.21 REMARK 500 ALA B 246 45.05 -87.90 REMARK 500 ASN B 312 54.86 36.46 REMARK 500 GLU B 317 -122.95 -141.90 REMARK 500 THR B 422 -25.19 -147.80 REMARK 500 PRO B 426 -176.39 -63.81 REMARK 500 PHE B 507 -131.54 -88.65 REMARK 500 SER B 508 139.96 101.35 REMARK 500 ILE B 574 78.94 -110.67 REMARK 500 ILE B 636 -74.41 -71.63 REMARK 500 ASN B 677 64.79 37.19 REMARK 500 ASN B 678 98.41 -163.15 REMARK 500 ASN B 681 41.56 -143.66 REMARK 500 SER B 711 -5.40 167.35 REMARK 500 LYS B 712 140.13 72.08 REMARK 500 ASN B 724 5.51 -62.41 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QAS A 135 756 UNP P10688 PLCD1_RAT 135 756 DBREF 1QAS B 135 756 UNP P10688 PLCD1_RAT 135 756 SEQRES 1 A 622 MET ASP GLN ARG GLN LYS LEU GLN HIS TRP ILE HIS SER SEQRES 2 A 622 CYS LEU ARG LYS ALA ASP LYS ASN LYS ASP ASN LYS MET SEQRES 3 A 622 ASN PHE LYS GLU LEU LYS ASP PHE LEU LYS GLU LEU ASN SEQRES 4 A 622 ILE GLN VAL ASP ASP GLY TYR ALA ARG LYS ILE PHE ARG SEQRES 5 A 622 GLU CYS ASP HIS SER GLN THR ASP SER LEU GLU ASP GLU SEQRES 6 A 622 GLU ILE GLU THR PHE TYR LYS MET LEU THR GLN ARG ALA SEQRES 7 A 622 GLU ILE ASP ARG ALA PHE GLU GLU ALA ALA GLY SER ALA SEQRES 8 A 622 GLU THR LEU SER VAL GLU ARG LEU VAL THR PHE LEU GLN SEQRES 9 A 622 HIS GLN GLN ARG GLU GLU GLU ALA GLY PRO ALA LEU ALA SEQRES 10 A 622 LEU SER LEU ILE GLU ARG TYR GLU PRO SER GLU THR ALA SEQRES 11 A 622 LYS ALA GLN ARG GLN MET THR LYS ASP GLY PHE LEU MET SEQRES 12 A 622 TYR LEU LEU SER ALA ASP GLY ASN ALA PHE SER LEU ALA SEQRES 13 A 622 HIS ARG ARG VAL TYR GLN ASP MET ASP GLN PRO LEU SER SEQRES 14 A 622 HIS TYR LEU VAL SER SER SER HIS ASN THR TYR LEU LEU SEQRES 15 A 622 GLU ASP GLN LEU THR GLY PRO SER SER THR GLU ALA TYR SEQRES 16 A 622 ILE ARG ALA LEU CYS LYS GLY CYS ARG CYS LEU GLU LEU SEQRES 17 A 622 ASP CYS TRP ASP GLY PRO ASN GLN GLU PRO ILE ILE TYR SEQRES 18 A 622 HIS GLY TYR THR PHE THR SER LYS ILE LEU PHE CYS ASP SEQRES 19 A 622 VAL LEU ARG ALA ILE ARG ASP TYR ALA PHE LYS ALA SER SEQRES 20 A 622 PRO TYR PRO VAL ILE LEU SER LEU GLU ASN HIS CYS SER SEQRES 21 A 622 LEU GLU GLN GLN ARG VAL MET ALA ARG HIS LEU ARG ALA SEQRES 22 A 622 ILE LEU GLY PRO ILE LEU LEU ASP GLN PRO LEU ASP GLY SEQRES 23 A 622 VAL THR THR SER LEU PRO SER PRO GLU GLN LEU LYS GLY SEQRES 24 A 622 LYS ILE LEU LEU LYS GLY LYS LYS LEU GLY GLY LEU LEU SEQRES 25 A 622 PRO ALA GLY GLY GLU ASN GLY SER GLU ALA THR ASP VAL SEQRES 26 A 622 SER ASP GLU VAL GLU ALA ALA GLU MET GLU ASP GLU ALA SEQRES 27 A 622 VAL ARG SER GLN VAL GLN HIS LYS PRO LYS GLU ASP LYS SEQRES 28 A 622 LEU LYS LEU VAL PRO GLU LEU SER ASP MET ILE ILE TYR SEQRES 29 A 622 CYS LYS SER VAL HIS PHE GLY GLY PHE SER SER PRO GLY SEQRES 30 A 622 THR SER GLY GLN ALA PHE TYR GLU MET ALA SER PHE SER SEQRES 31 A 622 GLU SER ARG ALA LEU ARG LEU LEU GLN GLU SER GLY ASN SEQRES 32 A 622 GLY PHE VAL ARG HIS ASN VAL SER CYS LEU SER ARG ILE SEQRES 33 A 622 TYR PRO ALA GLY TRP ARG THR ASP SER SER ASN TYR SER SEQRES 34 A 622 PRO VAL GLU MET TRP ASN GLY GLY CYS GLN ILE VAL ALA SEQRES 35 A 622 LEU ASN PHE GLN THR PRO GLY PRO GLU MET ASP VAL TYR SEQRES 36 A 622 LEU GLY CYS PHE GLN ASP ASN GLY GLY CYS GLY TYR VAL SEQRES 37 A 622 LEU LYS PRO ALA PHE LEU ARG ASP PRO ASN THR THR PHE SEQRES 38 A 622 ASN SER ARG ALA LEU THR GLN GLY PRO TRP TRP ARG PRO SEQRES 39 A 622 GLU ARG LEU ARG VAL ARG ILE ILE SER GLY GLN GLN LEU SEQRES 40 A 622 PRO LYS VAL ASN LYS ASN LYS ASN SER ILE VAL ASP PRO SEQRES 41 A 622 LYS VAL ILE VAL GLU ILE HIS GLY VAL GLY ARG ASP THR SEQRES 42 A 622 GLY SER ARG GLN THR ALA VAL ILE THR ASN ASN GLY PHE SEQRES 43 A 622 ASN PRO ARG TRP ASP MET GLU PHE GLU PHE GLU VAL THR SEQRES 44 A 622 VAL PRO ASP LEU ALA LEU VAL ARG PHE MET VAL GLU ASP SEQRES 45 A 622 TYR ASP SER SER SER LYS ASN ASP PHE ILE GLY GLN SER SEQRES 46 A 622 THR ILE PRO TRP ASN SER LEU LYS GLN GLY TYR ARG HIS SEQRES 47 A 622 VAL HIS LEU LEU SER LYS ASN GLY ASP GLN HIS PRO SER SEQRES 48 A 622 ALA THR LEU PHE VAL LYS ILE SER ILE GLN ASP SEQRES 1 B 622 MET ASP GLN ARG GLN LYS LEU GLN HIS TRP ILE HIS SER SEQRES 2 B 622 CYS LEU ARG LYS ALA ASP LYS ASN LYS ASP ASN LYS MET SEQRES 3 B 622 ASN PHE LYS GLU LEU LYS ASP PHE LEU LYS GLU LEU ASN SEQRES 4 B 622 ILE GLN VAL ASP ASP GLY TYR ALA ARG LYS ILE PHE ARG SEQRES 5 B 622 GLU CYS ASP HIS SER GLN THR ASP SER LEU GLU ASP GLU SEQRES 6 B 622 GLU ILE GLU THR PHE TYR LYS MET LEU THR GLN ARG ALA SEQRES 7 B 622 GLU ILE ASP ARG ALA PHE GLU GLU ALA ALA GLY SER ALA SEQRES 8 B 622 GLU THR LEU SER VAL GLU ARG LEU VAL THR PHE LEU GLN SEQRES 9 B 622 HIS GLN GLN ARG GLU GLU GLU ALA GLY PRO ALA LEU ALA SEQRES 10 B 622 LEU SER LEU ILE GLU ARG TYR GLU PRO SER GLU THR ALA SEQRES 11 B 622 LYS ALA GLN ARG GLN MET THR LYS ASP GLY PHE LEU MET SEQRES 12 B 622 TYR LEU LEU SER ALA ASP GLY ASN ALA PHE SER LEU ALA SEQRES 13 B 622 HIS ARG ARG VAL TYR GLN ASP MET ASP GLN PRO LEU SER SEQRES 14 B 622 HIS TYR LEU VAL SER SER SER HIS ASN THR TYR LEU LEU SEQRES 15 B 622 GLU ASP GLN LEU THR GLY PRO SER SER THR GLU ALA TYR SEQRES 16 B 622 ILE ARG ALA LEU CYS LYS GLY CYS ARG CYS LEU GLU LEU SEQRES 17 B 622 ASP CYS TRP ASP GLY PRO ASN GLN GLU PRO ILE ILE TYR SEQRES 18 B 622 HIS GLY TYR THR PHE THR SER LYS ILE LEU PHE CYS ASP SEQRES 19 B 622 VAL LEU ARG ALA ILE ARG ASP TYR ALA PHE LYS ALA SER SEQRES 20 B 622 PRO TYR PRO VAL ILE LEU SER LEU GLU ASN HIS CYS SER SEQRES 21 B 622 LEU GLU GLN GLN ARG VAL MET ALA ARG HIS LEU ARG ALA SEQRES 22 B 622 ILE LEU GLY PRO ILE LEU LEU ASP GLN PRO LEU ASP GLY SEQRES 23 B 622 VAL THR THR SER LEU PRO SER PRO GLU GLN LEU LYS GLY SEQRES 24 B 622 LYS ILE LEU LEU LYS GLY LYS LYS LEU GLY GLY LEU LEU SEQRES 25 B 622 PRO ALA GLY GLY GLU ASN GLY SER GLU ALA THR ASP VAL SEQRES 26 B 622 SER ASP GLU VAL GLU ALA ALA GLU MET GLU ASP GLU ALA SEQRES 27 B 622 VAL ARG SER GLN VAL GLN HIS LYS PRO LYS GLU ASP LYS SEQRES 28 B 622 LEU LYS LEU VAL PRO GLU LEU SER ASP MET ILE ILE TYR SEQRES 29 B 622 CYS LYS SER VAL HIS PHE GLY GLY PHE SER SER PRO GLY SEQRES 30 B 622 THR SER GLY GLN ALA PHE TYR GLU MET ALA SER PHE SER SEQRES 31 B 622 GLU SER ARG ALA LEU ARG LEU LEU GLN GLU SER GLY ASN SEQRES 32 B 622 GLY PHE VAL ARG HIS ASN VAL SER CYS LEU SER ARG ILE SEQRES 33 B 622 TYR PRO ALA GLY TRP ARG THR ASP SER SER ASN TYR SER SEQRES 34 B 622 PRO VAL GLU MET TRP ASN GLY GLY CYS GLN ILE VAL ALA SEQRES 35 B 622 LEU ASN PHE GLN THR PRO GLY PRO GLU MET ASP VAL TYR SEQRES 36 B 622 LEU GLY CYS PHE GLN ASP ASN GLY GLY CYS GLY TYR VAL SEQRES 37 B 622 LEU LYS PRO ALA PHE LEU ARG ASP PRO ASN THR THR PHE SEQRES 38 B 622 ASN SER ARG ALA LEU THR GLN GLY PRO TRP TRP ARG PRO SEQRES 39 B 622 GLU ARG LEU ARG VAL ARG ILE ILE SER GLY GLN GLN LEU SEQRES 40 B 622 PRO LYS VAL ASN LYS ASN LYS ASN SER ILE VAL ASP PRO SEQRES 41 B 622 LYS VAL ILE VAL GLU ILE HIS GLY VAL GLY ARG ASP THR SEQRES 42 B 622 GLY SER ARG GLN THR ALA VAL ILE THR ASN ASN GLY PHE SEQRES 43 B 622 ASN PRO ARG TRP ASP MET GLU PHE GLU PHE GLU VAL THR SEQRES 44 B 622 VAL PRO ASP LEU ALA LEU VAL ARG PHE MET VAL GLU ASP SEQRES 45 B 622 TYR ASP SER SER SER LYS ASN ASP PHE ILE GLY GLN SER SEQRES 46 B 622 THR ILE PRO TRP ASN SER LEU LYS GLN GLY TYR ARG HIS SEQRES 47 B 622 VAL HIS LEU LEU SER LYS ASN GLY ASP GLN HIS PRO SER SEQRES 48 B 622 ALA THR LEU PHE VAL LYS ILE SER ILE GLN ASP FORMUL 3 HOH *266(H2 O) HELIX 1 1 ALA A 212 ALA A 222 1 11 HELIX 2 2 VAL A 230 HIS A 239 1 10 HELIX 3 3 PRO A 248 TYR A 258 1 11 HELIX 4 4 GLU A 262 ALA A 266 1 5 HELIX 5 5 LYS A 272 LEU A 280 1 9 HELIX 6 6 LEU A 289 ARG A 292 5 4 HELIX 7 7 LEU A 302 HIS A 304 5 3 HELIX 8 8 THR A 326 CYS A 334 1 9 HELIX 9 9 PRO A 348 GLN A 350 5 3 HELIX 10 10 PHE A 366 TYR A 376 1 11 HELIX 11 11 LEU A 395 ILE A 408 1 14 HELIX 12 12 GLY A 410 ILE A 412 5 3 HELIX 13 13 GLU A 429 LEU A 431 5 3 HELIX 14 14 PRO A 490 MET A 495 1 6 HELIX 15 15 GLU A 525 GLU A 534 1 10 HELIX 16 16 GLY A 536 SER A 545 5 10 HELIX 17 17 VAL A 565 GLY A 570 1 6 HELIX 18 18 PRO A 584 GLN A 594 1 11 HELIX 19 19 ASN A 596 GLY A 598 5 3 HELIX 20 20 ALA A 606 LEU A 608 5 3 HELIX 21 21 PRO A 695 LEU A 697 5 3 HELIX 22 22 TRP A 723 SER A 725 5 3 HELIX 23 23 ALA B 212 ALA B 222 1 11 HELIX 24 24 VAL B 230 HIS B 239 1 10 HELIX 25 25 GLY B 247 TYR B 258 1 12 HELIX 26 26 GLU B 262 ALA B 266 1 5 HELIX 27 27 ASP B 273 LEU B 280 1 8 HELIX 28 28 LEU B 289 ARG B 292 5 4 HELIX 29 29 LEU B 302 HIS B 304 5 3 HELIX 30 30 THR B 326 CYS B 334 1 9 HELIX 31 31 PRO B 348 GLN B 350 5 3 HELIX 32 32 PHE B 366 TYR B 376 1 11 HELIX 33 33 LEU B 395 ILE B 408 1 14 HELIX 34 34 GLY B 410 ILE B 412 5 3 HELIX 35 35 GLU B 429 LEU B 431 5 3 HELIX 36 36 PRO B 490 MET B 495 1 6 HELIX 37 37 GLU B 525 GLU B 534 1 10 HELIX 38 38 GLY B 536 SER B 545 5 10 HELIX 39 39 VAL B 565 GLY B 570 1 6 HELIX 40 40 PRO B 584 GLN B 594 1 11 HELIX 41 41 ASN B 596 GLY B 598 5 3 HELIX 42 42 ALA B 606 LEU B 608 5 3 HELIX 43 43 PRO B 695 LEU B 697 5 3 HELIX 44 44 TRP B 723 SER B 725 5 3 SHEET 1 A 2 TYR A 305 VAL A 307 0 SHEET 2 A 2 TYR A 601 LEU A 603 -1 N VAL A 602 O LEU A 306 SHEET 1 B 3 CYS A 339 CYS A 344 0 SHEET 2 B 3 VAL A 385 ASN A 391 1 N ILE A 386 O LEU A 340 SHEET 3 B 3 ILE A 435 LYS A 438 1 N LEU A 436 O VAL A 385 SHEET 1 C 2 ALA A 521 SER A 524 0 SHEET 2 C 2 SER A 548 TYR A 551 1 N ARG A 549 O ALA A 521 SHEET 1 D 4 MET A 686 VAL A 692 0 SHEET 2 D 4 GLU A 629 GLN A 639 -1 N ILE A 635 O MET A 686 SHEET 3 D 4 THR A 747 GLN A 755 -1 N GLN A 755 O ARG A 630 SHEET 4 D 4 GLY A 729 HIS A 734 -1 N VAL A 733 O LEU A 748 SHEET 1 E 4 GLY A 668 GLN A 671 0 SHEET 2 E 4 PRO A 654 HIS A 661 -1 N ILE A 660 O GLY A 668 SHEET 3 E 4 LEU A 699 ASP A 706 -1 N GLU A 705 O LYS A 655 SHEET 4 E 4 ASP A 714 PRO A 722 -1 N ILE A 721 O VAL A 700 SHEET 1 F 3 TYR B 601 LEU B 603 0 SHEET 2 F 3 TYR B 305 SER B 310 -1 N LEU B 306 O VAL B 602 SHEET 3 F 3 ILE B 574 LEU B 577 1 N VAL B 575 O VAL B 307 SHEET 1 G 3 CYS B 339 CYS B 344 0 SHEET 2 G 3 VAL B 385 ASN B 391 1 N ILE B 386 O LEU B 340 SHEET 3 G 3 ILE B 435 LYS B 438 1 N LEU B 436 O VAL B 385 SHEET 1 H 2 ALA B 521 SER B 524 0 SHEET 2 H 2 SER B 548 TYR B 551 1 N ARG B 549 O ALA B 521 SHEET 1 I 4 MET B 686 VAL B 692 0 SHEET 2 I 4 GLU B 629 GLN B 639 -1 N ILE B 635 O MET B 686 SHEET 3 I 4 THR B 747 GLN B 755 -1 N GLN B 755 O ARG B 630 SHEET 4 I 4 GLY B 729 HIS B 734 -1 N VAL B 733 O LEU B 748 SHEET 1 J 4 GLY B 668 GLN B 671 0 SHEET 2 J 4 PRO B 654 HIS B 661 -1 N ILE B 660 O GLY B 668 SHEET 3 J 4 LEU B 699 ASP B 706 -1 N GLU B 705 O LYS B 655 SHEET 4 J 4 ASP B 714 PRO B 722 -1 N ILE B 721 O VAL B 700 CRYST1 61.100 75.400 86.900 66.90 85.40 89.80 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016367 -0.000057 -0.001408 0.00000 SCALE2 0.000000 0.013263 -0.005674 0.00000 SCALE3 0.000000 0.000000 0.012557 0.00000