HEADER MEMBRANE PROTEIN/OXIDOREDUCTASE 30-MAR-99 1QAV TITLE UNEXPECTED MODES OF PDZ DOMAIN SCAFFOLDING REVEALED BY STRUCTURE OF TITLE 2 NNOS-SYNTROPHIN COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-1 SYNTROPHIN (RESIDUES 77-171); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: NEURONAL NITRIC OXIDE SYNTHASE (RESIDUES 1-130); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET19B; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 10 ORGANISM_COMMON: NORWAY RAT; SOURCE 11 ORGANISM_TAXID: 10116; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS BETA-FINGER, HETERODIMER, MEMBRANE PROTEIN-OXIDOREDUCTASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.J.HILLIER,K.S.CHRISTOPHERSON,K.E.PREHODA,D.S.BREDT,W.A.LIM REVDAT 5 14-FEB-24 1QAV 1 SEQADV REVDAT 4 13-JUL-11 1QAV 1 HELIX SHEET REVDAT 3 24-FEB-09 1QAV 1 VERSN REVDAT 2 06-MAR-00 1QAV 1 HEADER CRYST1 REVDAT 1 04-MAY-99 1QAV 0 JRNL AUTH B.J.HILLIER,K.S.CHRISTOPHERSON,K.E.PREHODA,D.S.BREDT,W.A.LIM JRNL TITL UNEXPECTED MODES OF PDZ DOMAIN SCAFFOLDING REVEALED BY JRNL TITL 2 STRUCTURE OF NNOS-SYNTROPHIN COMPLEX. JRNL REF SCIENCE V. 284 812 1999 JRNL REFN ISSN 0036-8075 JRNL PMID 10221915 JRNL DOI 10.1126/SCIENCE.284.5415.812 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.3 REMARK 3 NUMBER OF REFLECTIONS : 15162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.208 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1508 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1503 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 148 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.004 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QAV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000009024. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-98; 24-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; ALS REMARK 200 BEAMLINE : BL7-1; 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08; 0.969 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15442 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 31.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 0.08800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, SITTING DROP, PH 8.5, REMARK 280 298K, 25% PEG4000, 0.2M SODIUM ACETATE, 100MM TRIS REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 15.79000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.91500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 17.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.91500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 15.79000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 17.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 103 CG CD CE NZ REMARK 470 LYS A 151 CG CD CE NZ REMARK 470 LYS A 164 CG CD CE NZ REMARK 470 GLN B1012 CG CD OE1 NE2 REMARK 470 LYS B1024 CG CD CE NZ REMARK 470 ASP B1069 CG OD1 OD2 REMARK 470 ARG B1070 CG CD NE CZ NH1 NH2 REMARK 470 ARG B1085 CG CD NE CZ NH1 NH2 REMARK 470 GLU B1101 CG CD OE1 OE2 REMARK 470 ASP B1114 CG OD1 OD2 REMARK 470 THR B1116 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B1014 12.16 -154.14 REMARK 500 ASN B1068 -127.21 55.98 REMARK 500 ASP B1069 41.70 -98.03 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QAV A 75 164 UNP Q61234 SNTA1_MOUSE 75 164 DBREF 1QAV B 1012 1126 UNP P29476 NOS1_RAT 12 126 SEQADV 1QAV GLY A 75 UNP Q61234 LEU 75 CONFLICT SEQADV 1QAV SER A 76 UNP Q61234 LEU 76 CONFLICT SEQRES 1 A 90 GLY SER LEU GLN ARG ARG ARG VAL THR VAL ARG LYS ALA SEQRES 2 A 90 ASP ALA GLY GLY LEU GLY ILE SER ILE LYS GLY GLY ARG SEQRES 3 A 90 GLU ASN LYS MET PRO ILE LEU ILE SER LYS ILE PHE LYS SEQRES 4 A 90 GLY LEU ALA ALA ASP GLN THR GLU ALA LEU PHE VAL GLY SEQRES 5 A 90 ASP ALA ILE LEU SER VAL ASN GLY GLU ASP LEU SER SER SEQRES 6 A 90 ALA THR HIS ASP GLU ALA VAL GLN ALA LEU LYS LYS THR SEQRES 7 A 90 GLY LYS GLU VAL VAL LEU GLU VAL LYS TYR MET LYS SEQRES 1 B 115 GLN PRO ASN VAL ILE SER VAL ARG LEU PHE LYS ARG LYS SEQRES 2 B 115 VAL GLY GLY LEU GLY PHE LEU VAL LYS GLU ARG VAL SER SEQRES 3 B 115 LYS PRO PRO VAL ILE ILE SER ASP LEU ILE ARG GLY GLY SEQRES 4 B 115 ALA ALA GLU GLN SER GLY LEU ILE GLN ALA GLY ASP ILE SEQRES 5 B 115 ILE LEU ALA VAL ASN ASP ARG PRO LEU VAL ASP LEU SER SEQRES 6 B 115 TYR ASP SER ALA LEU GLU VAL LEU ARG GLY ILE ALA SER SEQRES 7 B 115 GLU THR HIS VAL VAL LEU ILE LEU ARG GLY PRO GLU GLY SEQRES 8 B 115 PHE THR THR HIS LEU GLU THR THR PHE THR GLY ASP GLY SEQRES 9 B 115 THR PRO LYS THR ILE ARG VAL THR GLN PRO LEU FORMUL 3 HOH *148(H2 O) HELIX 1 1 ARG A 100 LYS A 103 5 4 HELIX 2 2 LEU A 115 THR A 120 1 6 HELIX 3 3 THR A 141 LYS A 151 1 11 HELIX 4 4 GLY B 1050 GLY B 1056 1 7 HELIX 5 5 SER B 1076 GLY B 1086 1 11 SHEET 1 A 4 ARG A 80 ARG A 85 0 SHEET 2 A 4 GLU A 155 TYR A 162 -1 O VAL A 156 N VAL A 84 SHEET 3 A 4 ASP A 127 VAL A 132 -1 N LEU A 130 O GLU A 159 SHEET 4 A 4 GLU A 135 ASP A 136 -1 O GLU A 135 N VAL A 132 SHEET 1 B 4 MET A 104 ILE A 111 0 SHEET 2 B 4 ILE A 94 GLY A 99 -1 N LYS A 97 O LEU A 107 SHEET 3 B 4 PHE B1103 PHE B1111 -1 O PHE B1111 N ILE A 94 SHEET 4 B 4 LYS B1118 PRO B1125 -1 O GLN B1124 N THR B1104 SHEET 1 C 4 VAL B1015 LYS B1022 0 SHEET 2 C 4 THR B1091 ARG B1098 -1 O VAL B1093 N LEU B1020 SHEET 3 C 4 ILE B1063 VAL B1067 -1 N LEU B1065 O ILE B1096 SHEET 4 C 4 ARG B1070 PRO B1071 -1 O ARG B1070 N VAL B1067 SHEET 1 D 2 PHE B1030 GLU B1034 0 SHEET 2 D 2 VAL B1041 LEU B1046 -1 O SER B1044 N LEU B1031 CISPEP 1 LYS B 1038 PRO B 1039 0 -0.41 CRYST1 31.580 34.310 187.830 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.031666 0.000000 0.000000 0.00000 SCALE2 0.000000 0.029146 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005324 0.00000