data_1QBP # _entry.id 1QBP # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1QBP pdb_00001qbp 10.2210/pdb1qbp/pdb NDB AR0025 ? ? RCSB RCSB009050 ? ? WWPDB D_1000009050 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-11-26 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1QBP _pdbx_database_status.recvd_initial_deposition_date 1999-04-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Anderson, A.C.' 1 ;O'Neil, R.H. ; 2 'Filman, D.J.' 3 'Frederick, C.A.' 4 # _citation.id primary _citation.title 'Crystal structure of a brominated RNA helix with four mismatched base pairs: An investigation into RNA conformational variability.' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 12577 _citation.page_last 12585 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10504226 _citation.pdbx_database_id_DOI 10.1021/bi9904508 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Anderson, A.C.' 1 ? primary ;O'Neil, R.H. ; 2 ? primary 'Filman, D.J.' 3 ? primary 'Frederick, C.A.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*GP*(CBV)P*(CBV)P*AP*GP*UP*UP*CP*GP*CP*UP*GP*GP*C)-3'" 4918.642 6 ? ? ? ? 2 water nat water 18.015 110 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'UG(CBV)(CBV)AGUUCGCUGGC' _entity_poly.pdbx_seq_one_letter_code_can UGCCAGUUCGCUGGC _entity_poly.pdbx_strand_id A,B,C,D,E,F _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 G n 1 3 CBV n 1 4 CBV n 1 5 A n 1 6 G n 1 7 U n 1 8 U n 1 9 C n 1 10 G n 1 11 C n 1 12 U n 1 13 G n 1 14 G n 1 15 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'SYNTHESIZED BY THE SOLID-PHASE PHOSPHORAMIDITE METHOD' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBV 'RNA linking' n ;5-BROMOCYTIDINE 5'-(DIHYDROGEN PHOSPHATE) ; ? 'C9 H13 Br N3 O8 P' 402.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 1 1 U U A . n A 1 2 G 2 2 2 G G A . n A 1 3 CBV 3 3 3 CBV +C A . n A 1 4 CBV 4 4 4 CBV +C A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 C 9 9 9 C C A . n A 1 10 G 10 10 10 G G A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 G 13 13 13 G G A . n A 1 14 G 14 14 14 G G A . n A 1 15 C 15 15 15 C C A . n B 1 1 U 1 16 16 U U B . n B 1 2 G 2 17 17 G G B . n B 1 3 CBV 3 18 18 CBV +C B . n B 1 4 CBV 4 19 19 CBV +C B . n B 1 5 A 5 20 20 A A B . n B 1 6 G 6 21 21 G G B . n B 1 7 U 7 22 22 U U B . n B 1 8 U 8 23 23 U U B . n B 1 9 C 9 24 24 C C B . n B 1 10 G 10 25 25 G G B . n B 1 11 C 11 26 26 C C B . n B 1 12 U 12 27 27 U U B . n B 1 13 G 13 28 28 G G B . n B 1 14 G 14 29 29 G G B . n B 1 15 C 15 30 30 C C B . n C 1 1 U 1 31 31 U U C . n C 1 2 G 2 32 32 G G C . n C 1 3 CBV 3 33 33 CBV +C C . n C 1 4 CBV 4 34 34 CBV +C C . n C 1 5 A 5 35 35 A A C . n C 1 6 G 6 36 36 G G C . n C 1 7 U 7 37 37 U U C . n C 1 8 U 8 38 38 U U C . n C 1 9 C 9 39 39 C C C . n C 1 10 G 10 40 40 G G C . n C 1 11 C 11 41 41 C C C . n C 1 12 U 12 42 42 U U C . n C 1 13 G 13 43 43 G G C . n C 1 14 G 14 44 44 G G C . n C 1 15 C 15 45 45 C C C . n D 1 1 U 1 46 46 U U D . n D 1 2 G 2 47 47 G G D . n D 1 3 CBV 3 48 48 CBV +C D . n D 1 4 CBV 4 49 49 CBV +C D . n D 1 5 A 5 50 50 A A D . n D 1 6 G 6 51 51 G G D . n D 1 7 U 7 52 52 U U D . n D 1 8 U 8 53 53 U U D . n D 1 9 C 9 54 54 C C D . n D 1 10 G 10 55 55 G G D . n D 1 11 C 11 56 56 C C D . n D 1 12 U 12 57 57 U U D . n D 1 13 G 13 58 58 G G D . n D 1 14 G 14 59 59 G G D . n D 1 15 C 15 60 60 C C D . n E 1 1 U 1 61 61 U U E . n E 1 2 G 2 62 62 G G E . n E 1 3 CBV 3 63 63 CBV +C E . n E 1 4 CBV 4 64 64 CBV +C E . n E 1 5 A 5 65 65 A A E . n E 1 6 G 6 66 66 G G E . n E 1 7 U 7 67 67 U U E . n E 1 8 U 8 68 68 U U E . n E 1 9 C 9 69 69 C C E . n E 1 10 G 10 70 70 G G E . n E 1 11 C 11 71 71 C C E . n E 1 12 U 12 72 72 U U E . n E 1 13 G 13 73 73 G G E . n E 1 14 G 14 74 74 G G E . n E 1 15 C 15 75 75 C C E . n F 1 1 U 1 76 76 U U F . n F 1 2 G 2 77 77 G G F . n F 1 3 CBV 3 78 78 CBV +C F . n F 1 4 CBV 4 79 79 CBV +C F . n F 1 5 A 5 80 80 A A F . n F 1 6 G 6 81 81 G G F . n F 1 7 U 7 82 82 U U F . n F 1 8 U 8 83 83 U U F . n F 1 9 C 9 84 84 C C F . n F 1 10 G 10 85 85 G G F . n F 1 11 C 11 86 86 C C F . n F 1 12 U 12 87 87 U U F . n F 1 13 G 13 88 88 G G F . n F 1 14 G 14 89 89 G G F . n F 1 15 C 15 90 90 C C F . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 HOH 1 2018 2018 HOH WAT A . G 2 HOH 2 2035 2035 HOH WAT A . G 2 HOH 3 2037 2037 HOH WAT A . G 2 HOH 4 2093 2093 HOH WAT A . G 2 HOH 5 2095 2095 HOH WAT A . G 2 HOH 6 4001 4001 HOH WAT A . G 2 HOH 7 5005 5005 HOH WAT A . G 2 HOH 8 5016 5016 HOH WAT A . G 2 HOH 9 5021 5021 HOH WAT A . G 2 HOH 10 6005 6005 HOH WAT A . G 2 HOH 11 6096 6096 HOH WAT A . G 2 HOH 12 6138 6138 HOH WAT A . G 2 HOH 13 6167 6167 HOH WAT A . G 2 HOH 14 6202 6202 HOH WAT A . G 2 HOH 15 7105 7105 HOH WAT A . G 2 HOH 16 7113 7113 HOH WAT A . G 2 HOH 17 7114 7114 HOH WAT A . G 2 HOH 18 7119 7119 HOH WAT A . G 2 HOH 19 7203 7203 HOH WAT A . G 2 HOH 20 7205 7205 HOH WAT A . G 2 HOH 21 7212 7212 HOH WAT A . G 2 HOH 22 7223 7223 HOH WAT A . G 2 HOH 23 7319 7319 HOH WAT A . G 2 HOH 24 7505 7505 HOH WAT A . G 2 HOH 25 7506 7506 HOH WAT A . H 2 HOH 1 4008 4008 HOH WAT B . H 2 HOH 2 4009 4009 HOH WAT B . H 2 HOH 3 5000 5000 HOH WAT B . H 2 HOH 4 5006 5006 HOH WAT B . H 2 HOH 5 5010 5010 HOH WAT B . H 2 HOH 6 5012 5012 HOH WAT B . H 2 HOH 7 5020 5020 HOH WAT B . H 2 HOH 8 6166 6166 HOH WAT B . H 2 HOH 9 6170 6170 HOH WAT B . H 2 HOH 10 6197 6197 HOH WAT B . H 2 HOH 11 6200 6200 HOH WAT B . H 2 HOH 12 6220 6220 HOH WAT B . H 2 HOH 13 6271 6271 HOH WAT B . H 2 HOH 14 7010 7010 HOH WAT B . H 2 HOH 15 7109 7109 HOH WAT B . H 2 HOH 16 7202 7202 HOH WAT B . H 2 HOH 17 7213 7213 HOH WAT B . H 2 HOH 18 7222 7222 HOH WAT B . H 2 HOH 19 7226 7226 HOH WAT B . H 2 HOH 20 7310 7310 HOH WAT B . H 2 HOH 21 7320 7320 HOH WAT B . H 2 HOH 22 7343 7343 HOH WAT B . I 2 HOH 1 1009 1009 HOH WAT C . I 2 HOH 2 2048 2048 HOH WAT C . I 2 HOH 3 2056 2056 HOH WAT C . I 2 HOH 4 2152 2152 HOH WAT C . I 2 HOH 5 2192 2192 HOH WAT C . I 2 HOH 6 3003 3003 HOH WAT C . I 2 HOH 7 3004 3004 HOH WAT C . I 2 HOH 8 4005 4005 HOH WAT C . I 2 HOH 9 4012 4012 HOH WAT C . I 2 HOH 10 5001 5001 HOH WAT C . I 2 HOH 11 5011 5011 HOH WAT C . I 2 HOH 12 5024 5024 HOH WAT C . I 2 HOH 13 6007 6007 HOH WAT C . I 2 HOH 14 6020 6020 HOH WAT C . I 2 HOH 15 6048 6048 HOH WAT C . I 2 HOH 16 6131 6131 HOH WAT C . I 2 HOH 17 6273 6273 HOH WAT C . I 2 HOH 18 6329 6329 HOH WAT C . I 2 HOH 19 7008 7008 HOH WAT C . I 2 HOH 20 7101 7101 HOH WAT C . I 2 HOH 21 7116 7116 HOH WAT C . I 2 HOH 22 7201 7201 HOH WAT C . I 2 HOH 23 7208 7208 HOH WAT C . I 2 HOH 24 7239 7239 HOH WAT C . I 2 HOH 25 7316 7316 HOH WAT C . I 2 HOH 26 7329 7329 HOH WAT C . I 2 HOH 27 7335 7335 HOH WAT C . I 2 HOH 28 7336 7336 HOH WAT C . I 2 HOH 29 7337 7337 HOH WAT C . I 2 HOH 30 7338 7338 HOH WAT C . I 2 HOH 31 7408 7408 HOH WAT C . I 2 HOH 32 7411 7411 HOH WAT C . J 2 HOH 1 2020 2020 HOH WAT D . J 2 HOH 2 2033 2033 HOH WAT D . J 2 HOH 3 2051 2051 HOH WAT D . J 2 HOH 4 2145 2145 HOH WAT D . J 2 HOH 5 2162 2162 HOH WAT D . J 2 HOH 6 2176 2176 HOH WAT D . J 2 HOH 7 3005 3005 HOH WAT D . J 2 HOH 8 4000 4000 HOH WAT D . J 2 HOH 9 4002 4002 HOH WAT D . J 2 HOH 10 4007 4007 HOH WAT D . J 2 HOH 11 5023 5023 HOH WAT D . J 2 HOH 12 6050 6050 HOH WAT D . J 2 HOH 13 6085 6085 HOH WAT D . J 2 HOH 14 6194 6194 HOH WAT D . J 2 HOH 15 6225 6225 HOH WAT D . J 2 HOH 16 7103 7103 HOH WAT D . J 2 HOH 17 7115 7115 HOH WAT D . J 2 HOH 18 7120 7120 HOH WAT D . J 2 HOH 19 7123 7123 HOH WAT D . J 2 HOH 20 7327 7327 HOH WAT D . J 2 HOH 21 7328 7328 HOH WAT D . J 2 HOH 22 7342 7342 HOH WAT D . J 2 HOH 23 7513 7513 HOH WAT D . K 2 HOH 1 2133 2133 HOH WAT E . K 2 HOH 2 3000 3000 HOH WAT E . K 2 HOH 3 3002 3002 HOH WAT E . K 2 HOH 4 7003 7003 HOH WAT E . K 2 HOH 5 7306 7306 HOH WAT E . K 2 HOH 6 7345 7345 HOH WAT E . L 2 HOH 1 7314 7314 HOH WAT F . L 2 HOH 2 7315 7315 HOH WAT F . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A U 1 ? "O5'" ? A U 1 "O5'" 2 1 Y 1 A U 1 ? "C5'" ? A U 1 "C5'" 3 1 Y 1 A U 1 ? "C4'" ? A U 1 "C4'" 4 1 Y 1 A U 1 ? "O4'" ? A U 1 "O4'" 5 1 Y 1 A U 1 ? "C3'" ? A U 1 "C3'" 6 1 Y 1 A U 1 ? "C2'" ? A U 1 "C2'" 7 1 Y 1 A U 1 ? "O2'" ? A U 1 "O2'" 8 1 Y 1 A U 1 ? "C1'" ? A U 1 "C1'" 9 1 Y 1 A U 1 ? N1 ? A U 1 N1 10 1 Y 1 A U 1 ? C2 ? A U 1 C2 11 1 Y 1 A U 1 ? O2 ? A U 1 O2 12 1 Y 1 A U 1 ? N3 ? A U 1 N3 13 1 Y 1 A U 1 ? C4 ? A U 1 C4 14 1 Y 1 A U 1 ? O4 ? A U 1 O4 15 1 Y 1 A U 1 ? C5 ? A U 1 C5 16 1 Y 1 A U 1 ? C6 ? A U 1 C6 17 1 Y 1 B U 16 ? "O5'" ? B U 1 "O5'" 18 1 Y 1 B U 16 ? "C5'" ? B U 1 "C5'" 19 1 Y 1 B U 16 ? "C4'" ? B U 1 "C4'" 20 1 Y 1 B U 16 ? "O4'" ? B U 1 "O4'" 21 1 Y 1 B U 16 ? "C3'" ? B U 1 "C3'" 22 1 Y 1 B U 16 ? "C2'" ? B U 1 "C2'" 23 1 Y 1 B U 16 ? "O2'" ? B U 1 "O2'" 24 1 Y 1 B U 16 ? "C1'" ? B U 1 "C1'" 25 1 Y 1 B U 16 ? N1 ? B U 1 N1 26 1 Y 1 B U 16 ? C2 ? B U 1 C2 27 1 Y 1 B U 16 ? O2 ? B U 1 O2 28 1 Y 1 B U 16 ? N3 ? B U 1 N3 29 1 Y 1 B U 16 ? C4 ? B U 1 C4 30 1 Y 1 B U 16 ? O4 ? B U 1 O4 31 1 Y 1 B U 16 ? C5 ? B U 1 C5 32 1 Y 1 B U 16 ? C6 ? B U 1 C6 33 1 Y 1 C U 31 ? "O5'" ? C U 1 "O5'" 34 1 Y 1 C U 31 ? "C5'" ? C U 1 "C5'" 35 1 Y 1 C U 31 ? "C4'" ? C U 1 "C4'" 36 1 Y 1 C U 31 ? "O4'" ? C U 1 "O4'" 37 1 Y 1 C U 31 ? "C3'" ? C U 1 "C3'" 38 1 Y 1 C U 31 ? "C2'" ? C U 1 "C2'" 39 1 Y 1 C U 31 ? "O2'" ? C U 1 "O2'" 40 1 Y 1 C U 31 ? "C1'" ? C U 1 "C1'" 41 1 Y 1 C U 31 ? N1 ? C U 1 N1 42 1 Y 1 C U 31 ? C2 ? C U 1 C2 43 1 Y 1 C U 31 ? O2 ? C U 1 O2 44 1 Y 1 C U 31 ? N3 ? C U 1 N3 45 1 Y 1 C U 31 ? C4 ? C U 1 C4 46 1 Y 1 C U 31 ? O4 ? C U 1 O4 47 1 Y 1 C U 31 ? C5 ? C U 1 C5 48 1 Y 1 C U 31 ? C6 ? C U 1 C6 49 1 Y 1 D U 46 ? "O5'" ? D U 1 "O5'" 50 1 Y 1 D U 46 ? "C5'" ? D U 1 "C5'" 51 1 Y 1 D U 46 ? "C4'" ? D U 1 "C4'" 52 1 Y 1 D U 46 ? "O4'" ? D U 1 "O4'" 53 1 Y 1 D U 46 ? "C3'" ? D U 1 "C3'" 54 1 Y 1 D U 46 ? "C2'" ? D U 1 "C2'" 55 1 Y 1 D U 46 ? "O2'" ? D U 1 "O2'" 56 1 Y 1 D U 46 ? "C1'" ? D U 1 "C1'" 57 1 Y 1 D U 46 ? N1 ? D U 1 N1 58 1 Y 1 D U 46 ? C2 ? D U 1 C2 59 1 Y 1 D U 46 ? O2 ? D U 1 O2 60 1 Y 1 D U 46 ? N3 ? D U 1 N3 61 1 Y 1 D U 46 ? C4 ? D U 1 C4 62 1 Y 1 D U 46 ? O4 ? D U 1 O4 63 1 Y 1 D U 46 ? C5 ? D U 1 C5 64 1 Y 1 D U 46 ? C6 ? D U 1 C6 65 1 Y 1 E U 61 ? "O5'" ? E U 1 "O5'" 66 1 Y 1 E U 61 ? "C5'" ? E U 1 "C5'" 67 1 Y 1 E U 61 ? "C4'" ? E U 1 "C4'" 68 1 Y 1 E U 61 ? "O4'" ? E U 1 "O4'" 69 1 Y 1 E U 61 ? "C3'" ? E U 1 "C3'" 70 1 Y 1 E U 61 ? "C2'" ? E U 1 "C2'" 71 1 Y 1 E U 61 ? "O2'" ? E U 1 "O2'" 72 1 Y 1 E U 61 ? "C1'" ? E U 1 "C1'" 73 1 Y 1 E U 61 ? N1 ? E U 1 N1 74 1 Y 1 E U 61 ? C2 ? E U 1 C2 75 1 Y 1 E U 61 ? O2 ? E U 1 O2 76 1 Y 1 E U 61 ? N3 ? E U 1 N3 77 1 Y 1 E U 61 ? C4 ? E U 1 C4 78 1 Y 1 E U 61 ? O4 ? E U 1 O4 79 1 Y 1 E U 61 ? C5 ? E U 1 C5 80 1 Y 1 E U 61 ? C6 ? E U 1 C6 81 1 Y 1 F U 76 ? "O5'" ? F U 1 "O5'" 82 1 Y 1 F U 76 ? "C5'" ? F U 1 "C5'" 83 1 Y 1 F U 76 ? "C4'" ? F U 1 "C4'" 84 1 Y 1 F U 76 ? "O4'" ? F U 1 "O4'" 85 1 Y 1 F U 76 ? "C3'" ? F U 1 "C3'" 86 1 Y 1 F U 76 ? "C2'" ? F U 1 "C2'" 87 1 Y 1 F U 76 ? "O2'" ? F U 1 "O2'" 88 1 Y 1 F U 76 ? "C1'" ? F U 1 "C1'" 89 1 Y 1 F U 76 ? N1 ? F U 1 N1 90 1 Y 1 F U 76 ? C2 ? F U 1 C2 91 1 Y 1 F U 76 ? O2 ? F U 1 O2 92 1 Y 1 F U 76 ? N3 ? F U 1 N3 93 1 Y 1 F U 76 ? C4 ? F U 1 C4 94 1 Y 1 F U 76 ? O4 ? F U 1 O4 95 1 Y 1 F U 76 ? C5 ? F U 1 C5 96 1 Y 1 F U 76 ? C6 ? F U 1 C6 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 TRUNCATE 'data reduction' . ? 2 MLPHARE phasing . ? 3 X-PLOR refinement 3.851 ? 4 CCP4 'data scaling' '(TRUNCATE)' ? 5 # _cell.entry_id 1QBP _cell.length_a 104.450 _cell.length_b 24.270 _cell.length_c 104.450 _cell.angle_alpha 90.00 _cell.angle_beta 118.76 _cell.angle_gamma 90.00 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QBP _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 1QBP _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.45 _exptl_crystal.density_Matthews 2.03 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;25 MM SODIUM CACODYLATE, 45 MM MGCL2, 60 MM SPERMINE, 6.7 % MPD, RESERVOIR 40 % MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 292K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'SODIUM CACODYLATE' ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type FUJI _diffrn_detector.pdbx_collection_date 1996-02-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92036 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL1-5' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL1-5 _diffrn_source.pdbx_wavelength 0.92036 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QBP _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 2.1 _reflns.number_obs 11919 _reflns.number_all 11984 _reflns.percent_possible_obs 99.0 _reflns.pdbx_Rmerge_I_obs 0.06 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 11.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1QBP _refine.ls_number_reflns_obs 11919 _refine.ls_number_reflns_all 12344 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 999.0 _refine.ls_d_res_high 2.1 _refine.ls_percent_reflns_obs 97 _refine.ls_R_factor_obs 0.217 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.217 _refine.ls_R_factor_R_free 0.253 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 1192 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1800 _refine_hist.pdbx_number_atoms_ligand 12 _refine_hist.number_atoms_solvent 110 _refine_hist.number_atoms_total 1922 _refine_hist.d_res_high 2.1 _refine_hist.d_res_low 999.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.010 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d 1.21 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1QBP _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1QBP _struct.title 'CRYSTAL STRUCTURE OF A BROMINATED RNA HELIX WITH FOUR MISMATCHED BASE PAIRS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QBP _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'BROMINATED CYTOSINE, MISMATCHED BASE PAIRS, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 1 ? F N N 1 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1QBP _struct_ref.pdbx_db_accession 1QBP _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1QBP A 1 ? 15 ? 1QBP 1 ? 15 ? 1 15 2 1 1QBP B 1 ? 15 ? 1QBP 16 ? 30 ? 16 30 3 1 1QBP C 1 ? 15 ? 1QBP 31 ? 45 ? 31 45 4 1 1QBP D 1 ? 15 ? 1QBP 46 ? 60 ? 46 60 5 1 1QBP E 1 ? 15 ? 1QBP 61 ? 75 ? 61 75 6 1 1QBP F 1 ? 15 ? 1QBP 76 ? 90 ? 76 90 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 3 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,G,H 2 1 C,D,I,J 3 1 E,F,K,L # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 2 "O3'" ? ? ? 1_555 A CBV 3 P ? ? A G 2 A CBV 3 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale2 covale one ? A CBV 3 "O3'" ? ? ? 1_555 A CBV 4 P ? ? A CBV 3 A CBV 4 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale3 covale one ? A CBV 4 "O3'" ? ? ? 1_555 A A 5 P ? ? A CBV 4 A A 5 1_555 ? ? ? ? ? ? ? 1.594 ? ? covale4 covale both ? B G 2 "O3'" ? ? ? 1_555 B CBV 3 P ? ? B G 17 B CBV 18 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale5 covale one ? B CBV 3 "O3'" ? ? ? 1_555 B CBV 4 P ? ? B CBV 18 B CBV 19 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale6 covale one ? B CBV 4 "O3'" ? ? ? 1_555 B A 5 P ? ? B CBV 19 B A 20 1_555 ? ? ? ? ? ? ? 1.601 ? ? covale7 covale both ? C G 2 "O3'" ? ? ? 1_555 C CBV 3 P ? ? C G 32 C CBV 33 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale8 covale one ? C CBV 3 "O3'" ? ? ? 1_555 C CBV 4 P ? ? C CBV 33 C CBV 34 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale9 covale one ? C CBV 4 "O3'" ? ? ? 1_555 C A 5 P ? ? C CBV 34 C A 35 1_555 ? ? ? ? ? ? ? 1.597 ? ? covale10 covale both ? D G 2 "O3'" ? ? ? 1_555 D CBV 3 P ? ? D G 47 D CBV 48 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale11 covale one ? D CBV 3 "O3'" ? ? ? 1_555 D CBV 4 P ? ? D CBV 48 D CBV 49 1_555 ? ? ? ? ? ? ? 1.589 ? ? covale12 covale one ? D CBV 4 "O3'" ? ? ? 1_555 D A 5 P ? ? D CBV 49 D A 50 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale13 covale both ? E G 2 "O3'" ? ? ? 1_555 E CBV 3 P ? ? E G 62 E CBV 63 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale14 covale one ? E CBV 3 "O3'" ? ? ? 1_555 E CBV 4 P ? ? E CBV 63 E CBV 64 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale15 covale one ? E CBV 4 "O3'" ? ? ? 1_555 E A 5 P ? ? E CBV 64 E A 65 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale16 covale both ? F G 2 "O3'" ? ? ? 1_555 F CBV 3 P ? ? F G 77 F CBV 78 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale17 covale one ? F CBV 3 "O3'" ? ? ? 1_555 F CBV 4 P ? ? F CBV 78 F CBV 79 1_555 ? ? ? ? ? ? ? 1.625 ? ? covale18 covale one ? F CBV 4 "O3'" ? ? ? 1_555 F A 5 P ? ? F CBV 79 F A 80 1_555 ? ? ? ? ? ? ? 1.613 ? ? hydrog1 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 2 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 2 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 2 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A CBV 3 N3 ? ? ? 1_555 B G 14 N1 ? ? A CBV 3 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A CBV 3 N4 ? ? ? 1_555 B G 14 O6 ? ? A CBV 3 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A CBV 3 O2 ? ? ? 1_555 B G 14 N2 ? ? A CBV 3 B G 29 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A CBV 4 N3 ? ? ? 1_555 B G 13 N1 ? ? A CBV 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A CBV 4 N4 ? ? ? 1_555 B G 13 O6 ? ? A CBV 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A CBV 4 O2 ? ? ? 1_555 B G 13 N2 ? ? A CBV 4 B G 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 5 N1 ? ? ? 1_555 B U 12 N3 ? ? A A 5 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 5 N6 ? ? ? 1_555 B U 12 O4 ? ? A A 5 B U 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 6 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 6 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 6 B C 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A U 7 N3 ? ? ? 1_555 B G 10 O6 ? ? A U 7 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog16 hydrog ? ? A U 7 O2 ? ? ? 1_555 B G 10 N1 ? ? A U 7 B G 25 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 8 O4 ? ? ? 1_555 B C 9 N4 ? ? A U 8 B C 24 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog18 hydrog ? ? A C 9 N4 ? ? ? 1_555 B U 8 O4 ? ? A C 9 B U 23 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog19 hydrog ? ? A G 10 N1 ? ? ? 1_555 B U 7 O2 ? ? A G 10 B U 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 10 O6 ? ? ? 1_555 B U 7 N3 ? ? A G 10 B U 22 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog21 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 6 N1 ? ? A C 11 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 6 O6 ? ? A C 11 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 6 N2 ? ? A C 11 B G 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A U 12 N3 ? ? ? 1_555 B A 5 N1 ? ? A U 12 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 12 O4 ? ? ? 1_555 B A 5 N6 ? ? A U 12 B A 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N1 ? ? ? 1_555 B CBV 4 N3 ? ? A G 13 B CBV 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 N2 ? ? ? 1_555 B CBV 4 O2 ? ? A G 13 B CBV 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 13 O6 ? ? ? 1_555 B CBV 4 N4 ? ? A G 13 B CBV 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 N1 ? ? ? 1_555 B CBV 3 N3 ? ? A G 14 B CBV 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 N2 ? ? ? 1_555 B CBV 3 O2 ? ? A G 14 B CBV 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A G 14 O6 ? ? ? 1_555 B CBV 3 N4 ? ? A G 14 B CBV 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 N3 ? ? ? 1_555 B G 2 N1 ? ? A C 15 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 15 N4 ? ? ? 1_555 B G 2 O6 ? ? A C 15 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 15 O2 ? ? ? 1_555 B G 2 N2 ? ? A C 15 B G 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 32 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 32 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 32 D C 60 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? C CBV 3 N3 ? ? ? 1_555 D G 14 N1 ? ? C CBV 33 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? C CBV 3 N4 ? ? ? 1_555 D G 14 O6 ? ? C CBV 33 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? C CBV 3 O2 ? ? ? 1_555 D G 14 N2 ? ? C CBV 33 D G 59 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? C CBV 4 N3 ? ? ? 1_555 D G 13 N1 ? ? C CBV 34 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? C CBV 4 N4 ? ? ? 1_555 D G 13 O6 ? ? C CBV 34 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? C CBV 4 O2 ? ? ? 1_555 D G 13 N2 ? ? C CBV 34 D G 58 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C A 5 N1 ? ? ? 1_555 D U 12 N3 ? ? C A 35 D U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C A 5 N6 ? ? ? 1_555 D U 12 O4 ? ? C A 35 D U 57 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 36 D C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 6 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 36 D C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 6 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 36 D C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C U 7 N3 ? ? ? 1_555 D G 10 O6 ? ? C U 37 D G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog50 hydrog ? ? C U 7 O2 ? ? ? 1_555 D G 10 N1 ? ? C U 37 D G 55 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? C U 8 O4 ? ? ? 1_555 D C 9 N4 ? ? C U 38 D C 54 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog52 hydrog ? ? C C 9 N4 ? ? ? 1_555 D U 8 O4 ? ? C C 39 D U 53 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog53 hydrog ? ? C G 10 N1 ? ? ? 1_555 D U 7 O2 ? ? C G 40 D U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog54 hydrog ? ? C G 10 O6 ? ? ? 1_555 D U 7 N3 ? ? C G 40 D U 52 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog55 hydrog ? ? C C 11 N3 ? ? ? 1_555 D G 6 N1 ? ? C C 41 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C C 11 N4 ? ? ? 1_555 D G 6 O6 ? ? C C 41 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C C 11 O2 ? ? ? 1_555 D G 6 N2 ? ? C C 41 D G 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? C U 12 N3 ? ? ? 1_555 D A 5 N1 ? ? C U 42 D A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C U 12 O4 ? ? ? 1_555 D A 5 N6 ? ? C U 42 D A 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C G 13 N1 ? ? ? 1_555 D CBV 4 N3 ? ? C G 43 D CBV 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C G 13 N2 ? ? ? 1_555 D CBV 4 O2 ? ? C G 43 D CBV 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C G 13 O6 ? ? ? 1_555 D CBV 4 N4 ? ? C G 43 D CBV 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 14 N1 ? ? ? 1_555 D CBV 3 N3 ? ? C G 44 D CBV 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 14 N2 ? ? ? 1_555 D CBV 3 O2 ? ? C G 44 D CBV 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 14 O6 ? ? ? 1_555 D CBV 3 N4 ? ? C G 44 D CBV 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C C 15 N3 ? ? ? 1_555 D G 2 N1 ? ? C C 45 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? C C 15 N4 ? ? ? 1_555 D G 2 O6 ? ? C C 45 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? C C 15 O2 ? ? ? 1_555 D G 2 N2 ? ? C C 45 D G 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? E G 2 N1 ? ? ? 1_555 F C 15 N3 ? ? E G 62 F C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? E G 2 N2 ? ? ? 1_555 F C 15 O2 ? ? E G 62 F C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? E G 2 O6 ? ? ? 1_555 F C 15 N4 ? ? E G 62 F C 90 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? E CBV 3 N3 ? ? ? 1_555 F G 14 N1 ? ? E CBV 63 F G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? E CBV 3 N4 ? ? ? 1_555 F G 14 O6 ? ? E CBV 63 F G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? E CBV 3 O2 ? ? ? 1_555 F G 14 N2 ? ? E CBV 63 F G 89 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? E CBV 4 N3 ? ? ? 1_555 F G 13 N1 ? ? E CBV 64 F G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? E CBV 4 N4 ? ? ? 1_555 F G 13 O6 ? ? E CBV 64 F G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? E CBV 4 O2 ? ? ? 1_555 F G 13 N2 ? ? E CBV 64 F G 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? E A 5 N1 ? ? ? 1_555 F U 12 N3 ? ? E A 65 F U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? E A 5 N6 ? ? ? 1_555 F U 12 O4 ? ? E A 65 F U 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? E G 6 N1 ? ? ? 1_555 F C 11 N3 ? ? E G 66 F C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? E G 6 N2 ? ? ? 1_555 F C 11 O2 ? ? E G 66 F C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? E G 6 O6 ? ? ? 1_555 F C 11 N4 ? ? E G 66 F C 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? E U 7 N3 ? ? ? 1_555 F G 10 O6 ? ? E U 67 F G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog84 hydrog ? ? E U 7 O2 ? ? ? 1_555 F G 10 N1 ? ? E U 67 F G 85 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog85 hydrog ? ? E U 8 O4 ? ? ? 1_555 F C 9 N4 ? ? E U 68 F C 84 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog86 hydrog ? ? E C 9 N4 ? ? ? 1_555 F U 8 O4 ? ? E C 69 F U 83 1_555 ? ? ? ? ? ? 'C-U MISPAIR' ? ? ? hydrog87 hydrog ? ? E G 10 N1 ? ? ? 1_555 F U 7 O2 ? ? E G 70 F U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog88 hydrog ? ? E G 10 O6 ? ? ? 1_555 F U 7 N3 ? ? E G 70 F U 82 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog89 hydrog ? ? E C 11 N3 ? ? ? 1_555 F G 6 N1 ? ? E C 71 F G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? E C 11 N4 ? ? ? 1_555 F G 6 O6 ? ? E C 71 F G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? E C 11 O2 ? ? ? 1_555 F G 6 N2 ? ? E C 71 F G 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? E U 12 N3 ? ? ? 1_555 F A 5 N1 ? ? E U 72 F A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? E U 12 O4 ? ? ? 1_555 F A 5 N6 ? ? E U 72 F A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog94 hydrog ? ? E G 13 N1 ? ? ? 1_555 F CBV 4 N3 ? ? E G 73 F CBV 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog95 hydrog ? ? E G 13 N2 ? ? ? 1_555 F CBV 4 O2 ? ? E G 73 F CBV 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog96 hydrog ? ? E G 13 O6 ? ? ? 1_555 F CBV 4 N4 ? ? E G 73 F CBV 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog97 hydrog ? ? E G 14 N1 ? ? ? 1_555 F CBV 3 N3 ? ? E G 74 F CBV 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog98 hydrog ? ? E G 14 N2 ? ? ? 1_555 F CBV 3 O2 ? ? E G 74 F CBV 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog99 hydrog ? ? E G 14 O6 ? ? ? 1_555 F CBV 3 N4 ? ? E G 74 F CBV 78 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog100 hydrog ? ? E C 15 N3 ? ? ? 1_555 F G 2 N1 ? ? E C 75 F G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog101 hydrog ? ? E C 15 N4 ? ? ? 1_555 F G 2 O6 ? ? E C 75 F G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog102 hydrog ? ? E C 15 O2 ? ? ? 1_555 F G 2 N2 ? ? E C 75 F G 77 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBV 3 A CBV 3 ? C ? 2 A CBV 4 A CBV 4 ? C ? 3 B CBV 3 B CBV 18 ? C ? 4 B CBV 4 B CBV 19 ? C ? 5 C CBV 3 C CBV 33 ? C ? 6 C CBV 4 C CBV 34 ? C ? 7 D CBV 3 D CBV 48 ? C ? 8 D CBV 4 D CBV 49 ? C ? 9 E CBV 3 E CBV 63 ? C ? 10 E CBV 4 E CBV 64 ? C ? 11 F CBV 3 F CBV 78 ? C ? 12 F CBV 4 F CBV 79 ? C ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CBV O3P O N N 73 CBV P P N N 74 CBV O1P O N N 75 CBV O2P O N N 76 CBV "O5'" O N N 77 CBV "C5'" C N N 78 CBV "C4'" C N R 79 CBV "O4'" O N N 80 CBV "C3'" C N S 81 CBV "O3'" O N N 82 CBV "C2'" C N R 83 CBV "O2'" O N N 84 CBV "C1'" C N R 85 CBV N1 N N N 86 CBV C2 C N N 87 CBV O2 O N N 88 CBV N3 N N N 89 CBV C4 C N N 90 CBV N4 N N N 91 CBV C5 C N N 92 CBV C6 C N N 93 CBV BR BR N N 94 CBV HO3P H N N 95 CBV HO1P H N N 96 CBV "H5'1" H N N 97 CBV "H5'2" H N N 98 CBV "H4'" H N N 99 CBV "H3'" H N N 100 CBV "HO3'" H N N 101 CBV "H2'" H N N 102 CBV "HO2'" H N N 103 CBV "H1'" H N N 104 CBV HN41 H N N 105 CBV HN42 H N N 106 CBV H6 H N N 107 G OP3 O N N 108 G P P N N 109 G OP1 O N N 110 G OP2 O N N 111 G "O5'" O N N 112 G "C5'" C N N 113 G "C4'" C N R 114 G "O4'" O N N 115 G "C3'" C N S 116 G "O3'" O N N 117 G "C2'" C N R 118 G "O2'" O N N 119 G "C1'" C N R 120 G N9 N Y N 121 G C8 C Y N 122 G N7 N Y N 123 G C5 C Y N 124 G C6 C N N 125 G O6 O N N 126 G N1 N N N 127 G C2 C N N 128 G N2 N N N 129 G N3 N N N 130 G C4 C Y N 131 G HOP3 H N N 132 G HOP2 H N N 133 G "H5'" H N N 134 G "H5''" H N N 135 G "H4'" H N N 136 G "H3'" H N N 137 G "HO3'" H N N 138 G "H2'" H N N 139 G "HO2'" H N N 140 G "H1'" H N N 141 G H8 H N N 142 G H1 H N N 143 G H21 H N N 144 G H22 H N N 145 HOH O O N N 146 HOH H1 H N N 147 HOH H2 H N N 148 U OP3 O N N 149 U P P N N 150 U OP1 O N N 151 U OP2 O N N 152 U "O5'" O N N 153 U "C5'" C N N 154 U "C4'" C N R 155 U "O4'" O N N 156 U "C3'" C N S 157 U "O3'" O N N 158 U "C2'" C N R 159 U "O2'" O N N 160 U "C1'" C N R 161 U N1 N N N 162 U C2 C N N 163 U O2 O N N 164 U N3 N N N 165 U C4 C N N 166 U O4 O N N 167 U C5 C N N 168 U C6 C N N 169 U HOP3 H N N 170 U HOP2 H N N 171 U "H5'" H N N 172 U "H5''" H N N 173 U "H4'" H N N 174 U "H3'" H N N 175 U "HO3'" H N N 176 U "H2'" H N N 177 U "HO2'" H N N 178 U "H1'" H N N 179 U H3 H N N 180 U H5 H N N 181 U H6 H N N 182 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBV O3P P sing N N 76 CBV O3P HO3P sing N N 77 CBV P O1P sing N N 78 CBV P O2P doub N N 79 CBV P "O5'" sing N N 80 CBV O1P HO1P sing N N 81 CBV "O5'" "C5'" sing N N 82 CBV "C5'" "C4'" sing N N 83 CBV "C5'" "H5'1" sing N N 84 CBV "C5'" "H5'2" sing N N 85 CBV "C4'" "O4'" sing N N 86 CBV "C4'" "C3'" sing N N 87 CBV "C4'" "H4'" sing N N 88 CBV "O4'" "C1'" sing N N 89 CBV "C3'" "O3'" sing N N 90 CBV "C3'" "C2'" sing N N 91 CBV "C3'" "H3'" sing N N 92 CBV "O3'" "HO3'" sing N N 93 CBV "C2'" "O2'" sing N N 94 CBV "C2'" "C1'" sing N N 95 CBV "C2'" "H2'" sing N N 96 CBV "O2'" "HO2'" sing N N 97 CBV "C1'" N1 sing N N 98 CBV "C1'" "H1'" sing N N 99 CBV N1 C2 sing N N 100 CBV N1 C6 sing N N 101 CBV C2 O2 doub N N 102 CBV C2 N3 sing N N 103 CBV N3 C4 doub N N 104 CBV C4 N4 sing N N 105 CBV C4 C5 sing N N 106 CBV N4 HN41 sing N N 107 CBV N4 HN42 sing N N 108 CBV C5 C6 doub N N 109 CBV C5 BR sing N N 110 CBV C6 H6 sing N N 111 G OP3 P sing N N 112 G OP3 HOP3 sing N N 113 G P OP1 doub N N 114 G P OP2 sing N N 115 G P "O5'" sing N N 116 G OP2 HOP2 sing N N 117 G "O5'" "C5'" sing N N 118 G "C5'" "C4'" sing N N 119 G "C5'" "H5'" sing N N 120 G "C5'" "H5''" sing N N 121 G "C4'" "O4'" sing N N 122 G "C4'" "C3'" sing N N 123 G "C4'" "H4'" sing N N 124 G "O4'" "C1'" sing N N 125 G "C3'" "O3'" sing N N 126 G "C3'" "C2'" sing N N 127 G "C3'" "H3'" sing N N 128 G "O3'" "HO3'" sing N N 129 G "C2'" "O2'" sing N N 130 G "C2'" "C1'" sing N N 131 G "C2'" "H2'" sing N N 132 G "O2'" "HO2'" sing N N 133 G "C1'" N9 sing N N 134 G "C1'" "H1'" sing N N 135 G N9 C8 sing Y N 136 G N9 C4 sing Y N 137 G C8 N7 doub Y N 138 G C8 H8 sing N N 139 G N7 C5 sing Y N 140 G C5 C6 sing N N 141 G C5 C4 doub Y N 142 G C6 O6 doub N N 143 G C6 N1 sing N N 144 G N1 C2 sing N N 145 G N1 H1 sing N N 146 G C2 N2 sing N N 147 G C2 N3 doub N N 148 G N2 H21 sing N N 149 G N2 H22 sing N N 150 G N3 C4 sing N N 151 HOH O H1 sing N N 152 HOH O H2 sing N N 153 U OP3 P sing N N 154 U OP3 HOP3 sing N N 155 U P OP1 doub N N 156 U P OP2 sing N N 157 U P "O5'" sing N N 158 U OP2 HOP2 sing N N 159 U "O5'" "C5'" sing N N 160 U "C5'" "C4'" sing N N 161 U "C5'" "H5'" sing N N 162 U "C5'" "H5''" sing N N 163 U "C4'" "O4'" sing N N 164 U "C4'" "C3'" sing N N 165 U "C4'" "H4'" sing N N 166 U "O4'" "C1'" sing N N 167 U "C3'" "O3'" sing N N 168 U "C3'" "C2'" sing N N 169 U "C3'" "H3'" sing N N 170 U "O3'" "HO3'" sing N N 171 U "C2'" "O2'" sing N N 172 U "C2'" "C1'" sing N N 173 U "C2'" "H2'" sing N N 174 U "O2'" "HO2'" sing N N 175 U "C1'" N1 sing N N 176 U "C1'" "H1'" sing N N 177 U N1 C2 sing N N 178 U N1 C6 sing N N 179 U C2 O2 doub N N 180 U C2 N3 sing N N 181 U N3 C4 sing N N 182 U N3 H3 sing N N 183 U C4 O4 doub N N 184 U C4 C5 sing N N 185 U C5 C6 doub N N 186 U C5 H5 sing N N 187 U C6 H6 sing N N 188 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1QBP 'double helix' 1QBP 'a-form double helix' 1QBP 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 2 1_555 B C 15 1_555 -0.367 -0.202 -0.262 -1.529 -11.099 5.652 1 A_G2:C30_B A 2 ? B 30 ? 19 1 1 A CBV 3 1_555 B G 14 1_555 0.040 -0.110 0.266 2.366 -13.398 0.456 2 A_CBV3:G29_B A 3 ? B 29 ? 19 1 1 A CBV 4 1_555 B G 13 1_555 0.139 -0.300 0.048 5.660 -10.596 2.409 3 A_CBV4:G28_B A 4 ? B 28 ? 19 1 1 A A 5 1_555 B U 12 1_555 0.242 -0.099 0.116 -0.304 -8.228 -2.821 4 A_A5:U27_B A 5 ? B 27 ? 20 1 1 A G 6 1_555 B C 11 1_555 -0.250 -0.270 0.014 0.005 -19.994 2.642 5 A_G6:C26_B A 6 ? B 26 ? 19 1 1 A U 7 1_555 B G 10 1_555 2.459 -0.558 0.015 0.145 -13.846 -0.367 6 A_U7:G25_B A 7 ? B 25 ? 28 ? 1 A U 8 1_555 B C 9 1_555 -0.677 0.431 -0.161 -8.408 -0.387 -40.221 7 A_U8:C24_B A 8 ? B 24 ? ? ? 1 A C 9 1_555 B U 8 1_555 0.420 0.444 0.438 -0.001 5.859 -39.831 8 A_C9:U23_B A 9 ? B 23 ? ? ? 1 A G 10 1_555 B U 7 1_555 -2.064 -0.513 -0.143 -3.102 -8.657 -1.644 9 A_G10:U22_B A 10 ? B 22 ? 28 1 1 A C 11 1_555 B G 6 1_555 0.524 -0.299 -0.041 2.905 -15.770 0.650 10 A_C11:G21_B A 11 ? B 21 ? 19 1 1 A U 12 1_555 B A 5 1_555 -0.239 -0.130 -0.169 2.105 -11.599 1.802 11 A_U12:A20_B A 12 ? B 20 ? 20 1 1 A G 13 1_555 B CBV 4 1_555 -0.298 -0.054 -0.228 -3.502 -12.916 2.532 12 A_G13:CBV19_B A 13 ? B 19 ? 19 1 1 A G 14 1_555 B CBV 3 1_555 -0.357 -0.162 -0.114 -6.558 -12.810 5.259 13 A_G14:CBV18_B A 14 ? B 18 ? 19 1 1 A C 15 1_555 B G 2 1_555 0.314 -0.210 0.114 -4.279 -8.026 1.404 14 A_C15:G17_B A 15 ? B 17 ? 19 1 1 D G 2 1_555 C C 15 1_555 -0.506 -0.197 0.210 4.827 -10.943 -2.515 15 D_G47:C45_C D 47 ? C 45 ? 19 1 1 D CBV 3 1_555 C G 14 1_555 0.361 -0.377 0.065 5.292 -14.666 2.513 16 D_CBV48:G44_C D 48 ? C 44 ? 19 1 1 D CBV 4 1_555 C G 13 1_555 0.204 -0.254 -0.009 2.377 -12.704 2.091 17 D_CBV49:G43_C D 49 ? C 43 ? 19 1 1 D A 5 1_555 C U 12 1_555 0.309 -0.211 -0.162 -3.135 -10.392 -3.082 18 D_A50:U42_C D 50 ? C 42 ? 20 1 1 D G 6 1_555 C C 11 1_555 -0.477 -0.140 -0.092 -11.261 -15.919 4.849 19 D_G51:C41_C D 51 ? C 41 ? 19 1 1 D U 7 1_555 C G 10 1_555 2.535 -0.745 0.157 1.794 -13.200 -1.290 20 D_U52:G40_C D 52 ? C 40 ? 28 ? 1 D U 8 1_555 C C 9 1_555 -0.077 0.324 0.542 3.252 7.944 -38.976 21 D_U53:C39_C D 53 ? C 39 ? ? ? 1 D C 9 1_555 C U 8 1_555 0.417 0.259 -0.299 14.668 -1.966 -41.263 22 D_C54:U38_C D 54 ? C 38 ? ? ? 1 D G 10 1_555 C U 7 1_555 -2.130 -0.534 0.184 7.026 -11.803 -1.345 23 D_G55:U37_C D 55 ? C 37 ? 28 ? 1 D C 11 1_555 C G 6 1_555 0.650 -0.225 0.038 -4.834 -11.398 0.238 24 D_C56:G36_C D 56 ? C 36 ? 19 1 1 D U 12 1_555 C A 5 1_555 0.301 0.009 0.092 0.918 -12.600 2.912 25 D_U57:A35_C D 57 ? C 35 ? 20 1 1 D G 13 1_555 C CBV 4 1_555 -0.233 -0.404 -0.026 -2.286 -8.417 1.080 26 D_G58:CBV34_C D 58 ? C 34 ? 19 1 1 D G 14 1_555 C CBV 3 1_555 -0.290 -0.296 0.242 0.636 -8.740 -0.264 27 D_G59:CBV33_C D 59 ? C 33 ? 19 1 1 D C 15 1_555 C G 2 1_555 0.314 -0.427 0.367 -7.229 2.622 -0.806 28 D_C60:G32_C D 60 ? C 32 ? 19 1 1 F G 2 1_555 E C 15 1_555 -0.193 -0.436 0.327 6.145 -3.670 1.475 29 F_G77:C75_E F 77 ? E 75 ? 19 1 1 F CBV 3 1_555 E G 14 1_555 0.012 -0.213 -0.314 7.075 -13.517 0.200 30 F_CBV78:G74_E F 78 ? E 74 ? 19 1 1 F CBV 4 1_555 E G 13 1_555 0.545 -0.517 -0.164 4.049 -5.567 4.075 31 F_CBV79:G73_E F 79 ? E 73 ? 19 1 1 F A 5 1_555 E U 12 1_555 0.695 -0.257 0.406 7.206 -7.962 -7.634 32 F_A80:U72_E F 80 ? E 72 ? 20 1 1 F G 6 1_555 E C 11 1_555 0.241 -0.352 0.133 -6.369 -20.351 1.641 33 F_G81:C71_E F 81 ? E 71 ? 19 1 1 F U 7 1_555 E G 10 1_555 1.688 -0.679 0.708 -7.289 -16.934 5.300 34 F_U82:G70_E F 82 ? E 70 ? 28 1 1 F U 8 1_555 E C 9 1_555 -0.475 0.812 0.784 -8.981 7.613 -48.777 35 F_U83:C69_E F 83 ? E 69 ? ? ? 1 F C 9 1_555 E U 8 1_555 0.669 -0.306 0.165 5.007 1.936 -34.857 36 F_C84:U68_E F 84 ? E 68 ? ? ? 1 F G 10 1_555 E U 7 1_555 -2.008 -0.496 -0.035 0.855 -21.459 9.734 37 F_G85:U67_E F 85 ? E 67 ? 28 1 1 F C 11 1_555 E G 6 1_555 0.038 -0.346 -0.399 3.908 -20.867 5.556 38 F_C86:G66_E F 86 ? E 66 ? 19 1 1 F U 12 1_555 E A 5 1_555 -0.226 -0.237 0.199 -1.913 -12.376 2.253 39 F_U87:A65_E F 87 ? E 65 ? 20 1 1 F G 13 1_555 E CBV 4 1_555 -0.340 -0.233 0.170 -6.840 -12.283 0.158 40 F_G88:CBV64_E F 88 ? E 64 ? 19 1 1 F G 14 1_555 E CBV 3 1_555 -0.197 -0.257 0.163 -8.217 -5.011 1.262 41 F_G89:CBV63_E F 89 ? E 63 ? 19 1 1 F C 15 1_555 E G 2 1_555 0.332 -0.194 -0.107 8.902 -4.039 1.552 42 F_C90:G62_E F 90 ? E 62 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 2 1_555 B C 15 1_555 A CBV 3 1_555 B G 14 1_555 -0.709 -1.960 3.174 -7.505 -0.027 32.571 -3.406 -0.004 3.254 -0.047 13.164 33.401 1 AA_G2CBV3:G29C30_BB A 2 ? B 30 ? A 3 ? B 29 ? 1 A CBV 3 1_555 B G 14 1_555 A CBV 4 1_555 B G 13 1_555 -0.333 -1.807 3.144 2.882 3.886 33.171 -3.725 1.016 2.882 6.762 -5.014 33.512 2 AA_CBV3CBV4:G28G29_BB A 3 ? B 29 ? A 4 ? B 28 ? 1 A CBV 4 1_555 B G 13 1_555 A A 5 1_555 B U 12 1_555 -0.349 -1.398 3.284 -1.173 9.481 30.149 -4.227 0.435 2.741 17.678 2.188 31.593 3 AA_CBV4A5:U27G28_BB A 4 ? B 28 ? A 5 ? B 27 ? 1 A A 5 1_555 B U 12 1_555 A G 6 1_555 B C 11 1_555 0.540 -1.458 3.307 3.951 5.212 31.694 -3.526 -0.281 3.078 9.418 -7.140 32.345 4 AA_A5G6:C26U27_BB A 5 ? B 27 ? A 6 ? B 26 ? 1 A G 6 1_555 B C 11 1_555 A U 7 1_555 B G 10 1_555 0.212 -1.471 3.072 0.031 7.129 42.125 -2.667 -0.288 2.798 9.833 -0.042 42.697 5 AA_G6U7:G25C26_BB A 6 ? B 26 ? A 7 ? B 25 ? 1 A U 7 1_555 B G 10 1_555 A U 8 1_555 B C 9 1_555 -3.631 -2.059 3.480 0.188 13.104 21.362 -8.207 8.430 1.885 31.786 -0.455 25.022 6 AA_U7U8:C24G25_BB A 7 ? B 25 ? A 8 ? B 24 ? 1 A U 8 1_555 B C 9 1_555 A C 9 1_555 B U 8 1_555 -0.044 -1.394 3.363 -1.067 6.320 36.670 -3.020 -0.073 3.089 9.951 1.681 37.207 7 AA_U8C9:U23C24_BB A 8 ? B 24 ? A 9 ? B 23 ? 1 A C 9 1_555 B U 8 1_555 A G 10 1_555 B U 7 1_555 4.164 -1.954 3.398 3.617 14.806 19.121 -9.004 -8.779 2.106 37.745 -9.220 24.408 8 AA_C9G10:U22U23_BB A 9 ? B 23 ? A 10 ? B 22 ? 1 A G 10 1_555 B U 7 1_555 A C 11 1_555 B G 6 1_555 -0.087 -1.208 3.102 -1.285 2.207 42.863 -1.856 -0.001 3.041 3.016 1.757 42.936 9 AA_G10C11:G21U22_BB A 10 ? B 22 ? A 11 ? B 21 ? 1 A C 11 1_555 B G 6 1_555 A U 12 1_555 B A 5 1_555 -0.243 -1.699 3.255 0.432 7.957 30.710 -4.473 0.519 2.736 14.715 -0.799 31.703 10 AA_C11U12:A20G21_BB A 11 ? B 21 ? A 12 ? B 20 ? 1 A U 12 1_555 B A 5 1_555 A G 13 1_555 B CBV 4 1_555 -0.447 -1.521 3.304 -2.231 11.135 28.096 -5.012 0.436 2.557 21.841 4.377 30.261 11 AA_U12G13:CBV19A20_BB A 12 ? B 20 ? A 13 ? B 19 ? 1 A G 13 1_555 B CBV 4 1_555 A G 14 1_555 B CBV 3 1_555 0.582 -1.548 3.359 -1.825 8.334 31.274 -4.190 -1.353 2.826 15.110 3.309 32.388 12 AA_G13G14:CBV18CBV19_BB A 13 ? B 19 ? A 14 ? B 18 ? 1 A G 14 1_555 B CBV 3 1_555 A C 15 1_555 B G 2 1_555 0.418 -1.886 3.099 1.827 2.775 36.425 -3.361 -0.433 2.969 4.429 -2.915 36.571 13 AA_G14C15:G17CBV18_BB A 14 ? B 18 ? A 15 ? B 17 ? 1 A C 15 1_555 B G 2 1_555 D G 2 1_555 C C 15 1_555 -0.076 2.180 3.356 0.594 -2.286 97.400 1.490 0.061 3.316 -1.521 -0.396 97.421 14 AD_C15G47:C45G17_CB A 15 ? B 17 ? D 47 ? C 45 ? 1 D G 2 1_555 C C 15 1_555 D CBV 3 1_555 C G 14 1_555 -0.370 -1.923 3.199 -1.877 3.345 38.385 -3.307 0.338 3.042 5.071 2.847 38.569 15 DD_G47CBV48:G44C45_CC D 47 ? C 45 ? D 48 ? C 44 ? 1 D CBV 3 1_555 C G 14 1_555 D CBV 4 1_555 C G 13 1_555 -0.639 -1.543 3.210 -0.120 10.135 30.586 -4.430 1.133 2.583 18.583 0.220 32.183 16 DD_CBV48CBV49:G43G44_CC D 48 ? C 44 ? D 49 ? C 43 ? 1 D CBV 4 1_555 C G 13 1_555 D A 5 1_555 C U 12 1_555 0.047 -1.556 3.318 2.375 8.368 29.462 -4.506 0.356 2.777 16.020 -4.547 30.692 17 DD_CBV49A50:U42G43_CC D 49 ? C 43 ? D 50 ? C 42 ? 1 D A 5 1_555 C U 12 1_555 D G 6 1_555 C C 11 1_555 0.737 -1.814 3.426 -0.332 10.113 29.296 -5.269 -1.442 2.659 19.284 0.633 30.958 18 DD_A50G51:C41U42_CC D 50 ? C 42 ? D 51 ? C 41 ? 1 D G 6 1_555 C C 11 1_555 D U 7 1_555 C G 10 1_555 -0.148 -0.911 2.887 -0.602 0.153 43.314 -1.248 0.149 2.886 0.207 0.815 43.319 19 DD_G51U52:G40C41_CC D 51 ? C 41 ? D 52 ? C 40 ? 1 D U 7 1_555 C G 10 1_555 D U 8 1_555 C C 9 1_555 -4.117 -2.155 3.264 -4.747 10.162 19.718 -9.113 8.785 2.742 27.030 12.628 22.657 20 DD_U52U53:C39G40_CC D 52 ? C 40 ? D 53 ? C 39 ? 1 D U 8 1_555 C C 9 1_555 D C 9 1_555 C U 8 1_555 -0.005 -1.421 3.255 4.761 8.873 35.002 -3.443 0.634 2.799 14.389 -7.721 36.378 21 DD_U53C54:U38C39_CC D 53 ? C 39 ? D 54 ? C 38 ? 1 D C 9 1_555 C U 8 1_555 D G 10 1_555 C U 7 1_555 3.412 -2.294 3.504 -1.790 14.962 26.070 -7.065 -6.897 1.727 30.173 3.609 30.047 22 DD_C54G55:U37U38_CC D 54 ? C 38 ? D 55 ? C 37 ? 1 D G 10 1_555 C U 7 1_555 D C 11 1_555 C G 6 1_555 -0.325 -1.584 3.449 -1.643 7.908 43.054 -2.890 0.277 3.134 10.663 2.216 43.770 23 DD_G55C56:G36U37_CC D 55 ? C 37 ? D 56 ? C 36 ? 1 D C 11 1_555 C G 6 1_555 D U 12 1_555 C A 5 1_555 -0.372 -1.537 3.068 -0.022 6.081 28.793 -4.187 0.728 2.693 12.060 0.045 29.415 24 DD_C56U57:A35G36_CC D 56 ? C 36 ? D 57 ? C 35 ? 1 D U 12 1_555 C A 5 1_555 D G 13 1_555 C CBV 4 1_555 -0.189 -1.493 3.198 -0.711 9.434 28.726 -4.603 0.232 2.592 18.396 1.386 30.212 25 DD_U57G58:CBV34A35_CC D 57 ? C 35 ? D 58 ? C 34 ? 1 D G 13 1_555 C CBV 4 1_555 D G 14 1_555 C CBV 3 1_555 0.657 -2.025 3.014 -1.667 4.306 29.774 -4.664 -1.561 2.661 8.317 3.220 30.122 26 DD_G58G59:CBV33CBV34_CC D 58 ? C 34 ? D 59 ? C 33 ? 1 D G 14 1_555 C CBV 3 1_555 D C 15 1_555 C G 2 1_555 0.210 -2.301 3.625 -0.959 -0.131 34.482 -3.857 -0.519 3.626 -0.222 1.617 34.495 27 DD_G59C60:G32CBV33_CC D 59 ? C 33 ? D 60 ? C 32 ? 1 D C 15 1_555 C G 2 1_555 F G 2 1_555 E C 15 1_555 0.089 1.760 2.923 -0.263 -0.780 86.173 1.303 -0.071 2.910 -0.571 0.193 86.176 28 DF_C60G77:C75G32_EC D 60 ? C 32 ? F 77 ? E 75 ? 1 F G 2 1_555 E C 15 1_555 F CBV 3 1_555 E G 14 1_555 -0.536 -1.958 3.222 0.149 -2.434 30.752 -3.205 1.038 3.361 -4.580 -0.280 30.846 29 FF_G77CBV78:G74C75_EE F 77 ? E 75 ? F 78 ? E 74 ? 1 F CBV 3 1_555 E G 14 1_555 F CBV 4 1_555 E G 13 1_555 -0.532 -2.088 3.361 0.876 4.224 31.645 -4.549 1.123 3.049 7.701 -1.596 31.930 30 FF_CBV78CBV79:G73G74_EE F 78 ? E 74 ? F 79 ? E 73 ? 1 F CBV 4 1_555 E G 13 1_555 F A 5 1_555 E U 12 1_555 -0.338 -1.776 3.065 -1.664 11.179 33.721 -4.312 0.346 2.387 18.632 2.774 35.513 31 FF_CBV79A80:U72G73_EE F 79 ? E 73 ? F 80 ? E 72 ? 1 F A 5 1_555 E U 12 1_555 F G 6 1_555 E C 11 1_555 0.654 -1.711 3.551 5.122 9.851 31.255 -4.704 -0.262 2.958 17.602 -9.153 33.122 32 FF_A80G81:C71U72_EE F 80 ? E 72 ? F 81 ? E 71 ? 1 F G 6 1_555 E C 11 1_555 F U 7 1_555 E G 10 1_555 0.555 -1.203 3.041 -2.067 4.143 31.587 -2.865 -1.348 2.823 7.561 3.772 31.916 33 FF_G81U82:G70C71_EE F 81 ? E 71 ? F 82 ? E 70 ? 1 F U 7 1_555 E G 10 1_555 F U 8 1_555 E C 9 1_555 -4.040 -1.966 3.083 -1.953 10.519 25.998 -6.215 7.926 2.411 22.222 4.126 28.078 34 FF_U82U83:C69G70_EE F 82 ? E 70 ? F 83 ? E 69 ? 1 F U 8 1_555 E C 9 1_555 F C 9 1_555 E U 8 1_555 0.345 -2.263 3.269 1.367 7.880 37.845 -4.325 -0.365 2.771 11.986 -2.080 38.650 35 FF_U83C84:U68C69_EE F 83 ? E 69 ? F 84 ? E 68 ? 1 F C 9 1_555 E U 8 1_555 F G 10 1_555 E U 7 1_555 3.193 -1.850 3.269 3.560 10.659 25.827 -6.195 -5.772 2.714 22.536 -7.526 28.128 36 FF_C84G85:U67U68_EE F 84 ? E 68 ? F 85 ? E 67 ? 1 F G 10 1_555 E U 7 1_555 F C 11 1_555 E G 6 1_555 -0.414 -1.147 3.049 -0.305 9.086 40.519 -2.487 0.555 2.743 12.923 0.434 41.485 37 FF_G85C86:G66U67_EE F 85 ? E 67 ? F 86 ? E 66 ? 1 F C 11 1_555 E G 6 1_555 F U 12 1_555 E A 5 1_555 -0.081 -1.439 3.413 -4.332 10.149 27.127 -4.984 -0.751 2.692 20.589 8.789 29.246 38 FF_C86U87:A65G66_EE F 86 ? E 66 ? F 87 ? E 65 ? 1 F U 12 1_555 E A 5 1_555 F G 13 1_555 E CBV 4 1_555 0.288 -1.589 3.182 -0.169 12.505 29.869 -4.802 -0.543 2.344 23.031 0.311 32.327 39 FF_U87G88:CBV64A65_EE F 87 ? E 65 ? F 88 ? E 64 ? 1 F G 13 1_555 E CBV 4 1_555 F G 14 1_555 E CBV 3 1_555 0.584 -2.083 3.273 0.103 3.729 30.066 -4.711 -1.098 3.001 7.153 -0.198 30.291 40 FF_G88G89:CBV63CBV64_EE F 88 ? E 64 ? F 89 ? E 63 ? 1 F G 14 1_555 E CBV 3 1_555 F C 15 1_555 E G 2 1_555 0.140 -1.845 2.897 3.769 -1.009 35.432 -2.884 0.261 2.946 -1.651 -6.170 35.639 41 FF_G89C90:G62CBV63_EE F 89 ? E 63 ? F 90 ? E 62 ? # _atom_sites.entry_id 1QBP _atom_sites.fract_transf_matrix[1][1] 0.009574 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005255 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041203 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010921 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_