data_1QDX # _entry.id 1QDX # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1QDX RCSB RCSB009327 WWPDB D_1000009327 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2000-08-09 _pdbx_database_PDB_obs_spr.pdb_id 1ES1 _pdbx_database_PDB_obs_spr.replace_pdb_id 1QDX _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1QDX _pdbx_database_status.recvd_initial_deposition_date 1999-07-11 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Xue, L.-L.' 1 'Wang, Y.-H.' 2 'Xie, Y.' 3 'Yao, P.' 4 'Wang, W.-H.' 5 'Qian, W.' 6 'Huang, Z.-X.' 7 'Wu, J.' 8 'Xia, Z.-X.' 9 # _citation.id primary _citation.title 'Effect of Mutation at Valine-61 on Three-dimensional Structure, Stability and Redox Potential of Cytochrome b5' _citation.journal_abbrev Biochemistry _citation.journal_volume 38 _citation.page_first 11961 _citation.page_last 11972 _citation.year 1999 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_DOI 10.1021/bi990893b _citation.pdbx_database_id_PubMed ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Xue, L.-L.' 1 primary 'Wang, Y.-H.' 2 primary 'Xie, Y.' 3 primary 'Yao, P.' 4 primary 'Wang, W.-H.' 5 primary 'Qian, W.' 6 primary 'Huang, Z.-X.' 7 primary 'Wu, J.' 8 primary 'Xia, Z.-X.' 9 # _cell.entry_id 1QDX _cell.length_a 70.76 _cell.length_b 40.43 _cell.length_c 39.31 _cell.angle_alpha 90.00 _cell.angle_beta 111.88 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1QDX _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'CYTOCHROME B5' 9514.396 1 ? V61H 'ALA 3 - ARG 84' ? 2 non-polymer syn 'PROTOPORPHYRIN IX CONTAINING FE' 616.487 1 ? ? ? ? 3 water nat water 18.015 69 ? ? ? ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 VAL n 1 3 LYS n 1 4 TYR n 1 5 TYR n 1 6 THR n 1 7 LEU n 1 8 GLU n 1 9 GLU n 1 10 ILE n 1 11 GLN n 1 12 LYS n 1 13 HIS n 1 14 ASN n 1 15 ASN n 1 16 SER n 1 17 LYS n 1 18 SER n 1 19 THR n 1 20 TRP n 1 21 LEU n 1 22 ILE n 1 23 LEU n 1 24 HIS n 1 25 TYR n 1 26 LYS n 1 27 VAL n 1 28 TYR n 1 29 ASP n 1 30 LEU n 1 31 THR n 1 32 LYS n 1 33 PHE n 1 34 LEU n 1 35 GLU n 1 36 GLU n 1 37 HIS n 1 38 PRO n 1 39 GLY n 1 40 GLY n 1 41 GLU n 1 42 GLU n 1 43 VAL n 1 44 LEU n 1 45 ARG n 1 46 GLU n 1 47 GLN n 1 48 ALA n 1 49 GLY n 1 50 GLY n 1 51 ASP n 1 52 ALA n 1 53 THR n 1 54 GLU n 1 55 ASN n 1 56 PHE n 1 57 GLU n 1 58 ASP n 1 59 HIS n 1 60 GLY n 1 61 HIS n 1 62 SER n 1 63 THR n 1 64 ASP n 1 65 ALA n 1 66 ARG n 1 67 GLU n 1 68 LEU n 1 69 SER n 1 70 LYS n 1 71 THR n 1 72 PHE n 1 73 ILE n 1 74 ILE n 1 75 GLY n 1 76 GLU n 1 77 LEU n 1 78 HIS n 1 79 PRO n 1 80 ASP n 1 81 ASP n 1 82 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bovine _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue LIVER _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'BOS TAURUS' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ LIVER _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name SWS _struct_ref.db_code CYB5_BOVIN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1QDX _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 82 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00171 _struct_ref_seq.db_align_beg 8 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 3 _struct_ref_seq.pdbx_auth_seq_align_end 84 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1QDX _struct_ref_seq_dif.mon_id HIS _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 59 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name SWS _struct_ref_seq_dif.pdbx_seq_db_accession_code P00171 _struct_ref_seq_dif.db_mon_id VAL _struct_ref_seq_dif.pdbx_seq_db_seq_num 66 _struct_ref_seq_dif.details ENGINEERED _struct_ref_seq_dif.pdbx_auth_seq_num 61 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HEM non-polymer . 'PROTOPORPHYRIN IX CONTAINING FE' HEME 'C34 H32 Fe N4 O4' 616.487 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1QDX _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.74 _exptl_crystal.density_percent_sol 55.14 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'PHOSPHATE BUFFER' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-04-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1QDX _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 12.0 _reflns.d_resolution_high 2.10 _reflns.number_obs 5579 _reflns.number_all 5579 _reflns.percent_possible_obs 91.7 _reflns.pdbx_Rmerge_I_obs 0.0900000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 10.3 _reflns.B_iso_Wilson_estimate 14.5 _reflns.pdbx_redundancy 1.93 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 79.5 _reflns_shell.Rmerge_I_obs 0.2320000 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy 1.62 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1QDX _refine.ls_number_reflns_obs 5093 _refine.ls_number_reflns_all 5411 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 10.0 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 94.1 _refine.ls_R_factor_obs 0.1910000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1910000 _refine.ls_R_factor_R_free 0.2700000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 577 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'X-PLOR DICTIONARY' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 673 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 43 _refine_hist.number_atoms_solvent 69 _refine_hist.number_atoms_total 785 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 10.0 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.017 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.70 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1QDX _struct.title 'CRYSTAL STRUCTURE OF V61H MUTANT OF CYTOCHROME B5' _struct.pdbx_descriptor 'CYTOCHROME B5' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1QDX _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.text 'PROTEIN MUTANT, OXIDOREDUCTASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 6 ? LYS A 12 ? THR A 8 LYS A 14 1 ? 7 HELX_P HELX_P2 2 THR A 31 ? LEU A 34 ? THR A 33 LEU A 36 5 ? 4 HELX_P HELX_P3 3 GLU A 41 ? GLU A 46 ? GLU A 43 GLU A 48 1 ? 6 HELX_P HELX_P4 4 ALA A 52 ? HIS A 59 ? ALA A 54 HIS A 61 1 ? 8 HELX_P HELX_P5 5 SER A 62 ? LYS A 70 ? SER A 64 LYS A 72 1 ? 9 HELX_P HELX_P6 6 PRO A 79 ? ARG A 82 ? PRO A 81 ARG A 84 5 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 4 ? TYR A 5 ? TYR A 6 TYR A 7 A 2 ILE A 73 ? LEU A 77 ? ILE A 75 LEU A 79 A 3 LYS A 26 ? ASP A 29 ? LYS A 28 ASP A 31 A 4 SER A 18 ? LEU A 23 ? SER A 20 LEU A 25 A 5 ASN A 14 ? ASN A 15 ? ASN A 16 ASN A 17 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 5 ? N TYR A 7 O GLU A 76 ? O GLU A 78 A 2 3 O GLY A 75 ? O GLY A 77 N VAL A 27 ? N VAL A 29 A 3 4 N TYR A 28 ? N TYR A 30 O LEU A 21 ? O LEU A 23 A 4 5 O SER A 18 ? O SER A 20 N ASN A 15 ? N ASN A 17 # _database_PDB_matrix.entry_id 1QDX _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1QDX _atom_sites.fract_transf_matrix[1][1] 0.014132 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024734 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027414 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C FE N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 3 3 ALA ALA A . n A 1 2 VAL 2 4 4 VAL VAL A . n A 1 3 LYS 3 5 5 LYS LYS A . n A 1 4 TYR 4 6 6 TYR TYR A . n A 1 5 TYR 5 7 7 TYR TYR A . n A 1 6 THR 6 8 8 THR THR A . n A 1 7 LEU 7 9 9 LEU LEU A . n A 1 8 GLU 8 10 10 GLU GLU A . n A 1 9 GLU 9 11 11 GLU GLU A . n A 1 10 ILE 10 12 12 ILE ILE A . n A 1 11 GLN 11 13 13 GLN GLN A . n A 1 12 LYS 12 14 14 LYS LYS A . n A 1 13 HIS 13 15 15 HIS HIS A . n A 1 14 ASN 14 16 16 ASN ASN A . n A 1 15 ASN 15 17 17 ASN ASN A . n A 1 16 SER 16 18 18 SER SER A . n A 1 17 LYS 17 19 19 LYS LYS A . n A 1 18 SER 18 20 20 SER SER A . n A 1 19 THR 19 21 21 THR THR A . n A 1 20 TRP 20 22 22 TRP TRP A . n A 1 21 LEU 21 23 23 LEU LEU A . n A 1 22 ILE 22 24 24 ILE ILE A . n A 1 23 LEU 23 25 25 LEU LEU A . n A 1 24 HIS 24 26 26 HIS HIS A . n A 1 25 TYR 25 27 27 TYR TYR A . n A 1 26 LYS 26 28 28 LYS LYS A . n A 1 27 VAL 27 29 29 VAL VAL A . n A 1 28 TYR 28 30 30 TYR TYR A . n A 1 29 ASP 29 31 31 ASP ASP A . n A 1 30 LEU 30 32 32 LEU LEU A . n A 1 31 THR 31 33 33 THR THR A . n A 1 32 LYS 32 34 34 LYS LYS A . n A 1 33 PHE 33 35 35 PHE PHE A . n A 1 34 LEU 34 36 36 LEU LEU A . n A 1 35 GLU 35 37 37 GLU GLU A . n A 1 36 GLU 36 38 38 GLU GLU A . n A 1 37 HIS 37 39 39 HIS HIS A . n A 1 38 PRO 38 40 40 PRO PRO A . n A 1 39 GLY 39 41 41 GLY GLY A . n A 1 40 GLY 40 42 42 GLY GLY A . n A 1 41 GLU 41 43 43 GLU GLU A . n A 1 42 GLU 42 44 44 GLU GLU A . n A 1 43 VAL 43 45 45 VAL VAL A . n A 1 44 LEU 44 46 46 LEU LEU A . n A 1 45 ARG 45 47 47 ARG ARG A . n A 1 46 GLU 46 48 48 GLU GLU A . n A 1 47 GLN 47 49 49 GLN GLN A . n A 1 48 ALA 48 50 50 ALA ALA A . n A 1 49 GLY 49 51 51 GLY GLY A . n A 1 50 GLY 50 52 52 GLY GLY A . n A 1 51 ASP 51 53 53 ASP ASP A . n A 1 52 ALA 52 54 54 ALA ALA A . n A 1 53 THR 53 55 55 THR THR A . n A 1 54 GLU 54 56 56 GLU GLU A . n A 1 55 ASN 55 57 57 ASN ASN A . n A 1 56 PHE 56 58 58 PHE PHE A . n A 1 57 GLU 57 59 59 GLU GLU A . n A 1 58 ASP 58 60 60 ASP ASP A . n A 1 59 HIS 59 61 61 HIS HIS A . n A 1 60 GLY 60 62 62 GLY GLY A . n A 1 61 HIS 61 63 63 HIS HIS A . n A 1 62 SER 62 64 64 SER SER A . n A 1 63 THR 63 65 65 THR THR A . n A 1 64 ASP 64 66 66 ASP ASP A . n A 1 65 ALA 65 67 67 ALA ALA A . n A 1 66 ARG 66 68 68 ARG ARG A . n A 1 67 GLU 67 69 69 GLU GLU A . n A 1 68 LEU 68 70 70 LEU LEU A . n A 1 69 SER 69 71 71 SER SER A . n A 1 70 LYS 70 72 72 LYS LYS A . n A 1 71 THR 71 73 73 THR THR A . n A 1 72 PHE 72 74 74 PHE PHE A . n A 1 73 ILE 73 75 75 ILE ILE A . n A 1 74 ILE 74 76 76 ILE ILE A . n A 1 75 GLY 75 77 77 GLY GLY A . n A 1 76 GLU 76 78 78 GLU GLU A . n A 1 77 LEU 77 79 79 LEU LEU A . n A 1 78 HIS 78 80 80 HIS HIS A . n A 1 79 PRO 79 81 81 PRO PRO A . n A 1 80 ASP 80 82 82 ASP ASP A . n A 1 81 ASP 81 83 83 ASP ASP A . n A 1 82 ARG 82 84 84 ARG ARG A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM 1 201 201 HEM HEM A . C 3 HOH 1 301 301 HOH HOH ? . C 3 HOH 2 302 302 HOH HOH ? . C 3 HOH 3 303 303 HOH HOH ? . C 3 HOH 4 304 304 HOH HOH ? . C 3 HOH 5 305 305 HOH HOH ? . C 3 HOH 6 306 306 HOH HOH ? . C 3 HOH 7 307 307 HOH HOH ? . C 3 HOH 8 308 308 HOH HOH ? . C 3 HOH 9 309 309 HOH HOH ? . C 3 HOH 10 310 310 HOH HOH ? . C 3 HOH 11 311 311 HOH HOH ? . C 3 HOH 12 312 312 HOH HOH ? . C 3 HOH 13 313 313 HOH HOH ? . C 3 HOH 14 314 314 HOH HOH ? . C 3 HOH 15 315 315 HOH HOH ? . C 3 HOH 16 316 316 HOH HOH ? . C 3 HOH 17 317 317 HOH HOH ? . C 3 HOH 18 318 318 HOH HOH ? . C 3 HOH 19 319 319 HOH HOH ? . C 3 HOH 20 320 320 HOH HOH ? . C 3 HOH 21 321 321 HOH HOH ? . C 3 HOH 22 322 322 HOH HOH ? . C 3 HOH 23 323 323 HOH HOH ? . C 3 HOH 24 324 324 HOH HOH ? . C 3 HOH 25 325 325 HOH HOH ? . C 3 HOH 26 326 326 HOH HOH ? . C 3 HOH 27 327 327 HOH HOH ? . C 3 HOH 28 328 328 HOH HOH ? . C 3 HOH 29 329 329 HOH HOH ? . C 3 HOH 30 330 330 HOH HOH ? . C 3 HOH 31 331 331 HOH HOH ? . C 3 HOH 32 332 332 HOH HOH ? . C 3 HOH 33 333 333 HOH HOH ? . C 3 HOH 34 334 334 HOH HOH ? . C 3 HOH 35 335 335 HOH HOH ? . C 3 HOH 36 336 336 HOH HOH ? . C 3 HOH 37 337 337 HOH HOH ? . C 3 HOH 38 338 338 HOH HOH ? . C 3 HOH 39 339 339 HOH HOH ? . C 3 HOH 40 340 340 HOH HOH ? . C 3 HOH 41 341 341 HOH HOH ? . C 3 HOH 42 342 342 HOH HOH ? . C 3 HOH 43 343 343 HOH HOH ? . C 3 HOH 44 344 344 HOH HOH ? . C 3 HOH 45 345 345 HOH HOH ? . C 3 HOH 46 346 346 HOH HOH ? . C 3 HOH 47 347 347 HOH HOH ? . C 3 HOH 48 348 348 HOH HOH ? . C 3 HOH 49 349 349 HOH HOH ? . C 3 HOH 50 350 350 HOH HOH ? . C 3 HOH 51 351 351 HOH HOH ? . C 3 HOH 52 352 352 HOH HOH ? . C 3 HOH 53 353 353 HOH HOH ? . C 3 HOH 54 354 354 HOH HOH ? . C 3 HOH 55 355 355 HOH HOH ? . C 3 HOH 56 356 356 HOH HOH ? . C 3 HOH 57 357 357 HOH HOH ? . C 3 HOH 58 358 358 HOH HOH ? . C 3 HOH 59 359 359 HOH HOH ? . C 3 HOH 60 360 360 HOH HOH ? . C 3 HOH 61 361 361 HOH HOH ? . C 3 HOH 62 362 362 HOH HOH ? . C 3 HOH 63 363 363 HOH HOH ? . C 3 HOH 64 364 364 HOH HOH ? . C 3 HOH 65 365 365 HOH HOH ? . C 3 HOH 66 366 366 HOH HOH ? . C 3 HOH 67 367 367 HOH HOH ? . C 3 HOH 68 368 368 HOH HOH ? . C 3 HOH 69 369 369 HOH HOH ? . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-07-12 2 'Structure model' 1 1 2000-08-09 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.classification _software.name _software.version _software.citation_id _software.pdbx_ordinal 'data collection' DENZO . ? 1 phasing AMoRE . ? 2 refinement X-PLOR 3.1 ? 3 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 68 ? ? CZ A ARG 68 ? ? NH1 A ARG 68 ? ? 116.14 120.30 -4.16 0.50 N 2 1 C A HIS 80 ? ? N A PRO 81 ? ? CA A PRO 81 ? ? 128.84 119.30 9.54 1.50 Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 16 ? ? -143.38 48.23 2 1 TYR A 27 ? ? 56.58 7.64 3 1 PRO A 81 ? ? -34.23 -37.34 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id HIS _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 63 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -10.58 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 TYR A 6 ? ? 0.133 'SIDE CHAIN' 2 1 TYR A 27 ? ? 0.088 'SIDE CHAIN' 3 1 ARG A 68 ? ? 0.214 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A HEM 201 ? NA ? B HEM 1 NA 2 1 N 1 A HEM 201 ? NB ? B HEM 1 NB 3 1 N 1 A HEM 201 ? NC ? B HEM 1 NC 4 1 N 1 A HEM 201 ? ND ? B HEM 1 ND # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PROTOPORPHYRIN IX CONTAINING FE' HEM 3 water HOH #