HEADER KINASE 07-APR-99 1QF9 TITLE PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX PHOSPHORYL TITLE 2 TRANSFER TRANSITION STATE ANALOG IN UMP/CMP KINASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (URIDYLMONOPHOSPHATE/CYTIDYLMONOPHOSPHATE KINASE); COMPND 3 CHAIN: A; COMPND 4 SYNONYM: UMP/CMP KINASE; COMPND 5 EC: 2.7.4.14; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_TAXID: 44689; SOURCE 4 STRAIN: AX2-214; SOURCE 5 GENE: KCY_DICDI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PIMS5-CDUK-1; SOURCE 9 EXPRESSION_SYSTEM_GENE: KCY_DICDI KEYWDS NUCLEOSIDE MONOPHOSPHATE KINASE, NMP KINASE, PHOSPHORYL TRANSFER, KEYWDS 2 TRANSITION STATE ANALOG COMPLEX, TRANSFERASE, KINASE EXPDTA X-RAY DIFFRACTION AUTHOR I.SCHLICHTING,J.REINSTEIN REVDAT 4 16-AUG-23 1QF9 1 REMARK LINK REVDAT 3 20-NOV-19 1QF9 1 JRNL REVDAT 2 24-FEB-09 1QF9 1 VERSN REVDAT 1 16-AUG-99 1QF9 0 JRNL AUTH I.SCHLICHTING,J.REINSTEIN JRNL TITL PH INFLUENCES FLUORIDE COORDINATION NUMBER OF THE ALFX JRNL TITL 2 PHOSPHORYL TRANSFER TRANSITION STATE ANALOG. JRNL REF NAT.STRUCT.BIOL. V. 6 721 1999 JRNL REFN ISSN 1072-8368 JRNL PMID 10426946 JRNL DOI 10.1038/11485 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.SCHLICHTING,J.REINSTEIN REMARK 1 TITL STRUCTURES OF ACTIVE CONFORMATIONS OF UMP KINASE FROM REMARK 1 TITL 2 DICTYOSTELIUM DISCOIDEUM SUGGEST PHOSPHORYL TRANSFER IS REMARK 1 TITL 3 ASSOCIATIVE. REMARK 1 REF BIOCHEMISTRY V. 36 9290 1997 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 9280438 REMARK 1 DOI 10.1021/BI970974C REMARK 1 REFERENCE 2 REMARK 1 AUTH K.SCHEFFZEK,W.KLICHE,L.WIESMULLER,J.REINSTEIN REMARK 1 TITL CRYSTAL STRUCTURE OF THE COMPLEX OF UMP/CMP KINASE FROM REMARK 1 TITL 2 DICTYOSTELIUM DISCOIDEUM AND THE BISUBSTRATE INHIBITOR REMARK 1 TITL 3 P1-(5'-ADENOSYL) P5-(5'-URIDYL) PENTAPHOSPHATE (UP5A) AND REMARK 1 TITL 4 MG2+ AT 2.2 A: IMPLICATIONS FOR WATER-MEDIATED SPECIFICITY. REMARK 1 REF BIOCHEMISTRY V. 35 9716 1996 REMARK 1 REFN ISSN 0006-2960 REMARK 1 PMID 8703943 REMARK 1 DOI 10.1021/BI960642S REMARK 1 REFERENCE 3 REMARK 1 AUTH L.WIESMULLER,K.SCHEFFZEK,W.KLICHE,R.S.GOODY,A.WITTINGHOFER, REMARK 1 AUTH 2 J.REINSTEIN REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 UMP/CMP-KINASE FROM DICTYOSTELIUM DISCOIDEUM WITH THE REMARK 1 TITL 3 SPECIFIC BISUBSTRATE INHIBITOR P1-(ADENOSINE 5')-P5-(URIDINE REMARK 1 TITL 4 5')-PENTAPHOSPHATE (UP5A). REMARK 1 REF FEBS LETT. V. 363 22 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 7729545 REMARK 1 DOI 10.1016/0014-5793(95)00271-A REMARK 1 REFERENCE 4 REMARK 1 AUTH L.WIESMULLER,A.A.NOEGEL,O.BARZU,G.GERISCH,M.SCHLEICHER REMARK 1 TITL CDNA-DERIVED SEQUENCE OF UMP-CMP KINASE FROM DICTYOSTELIUM REMARK 1 TITL 2 DISCOIDEUM AND EXPRESSION OF THE ENZYME IN ESCHERICHIA COLI. REMARK 1 REF J.BIOL.CHEM. V. 265 6339 1990 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 2156849 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 10000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0001 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 39907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1537 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 181 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.19 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 0.900 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.500 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.000 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAM19.SOL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QF9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000804. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRANDEIS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40853 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.70 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: 3UKD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM ACETATE PH 4.5, 50 MM REMARK 280 MGCL2, 40 MM DTE, 28% PEG 4000 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.30000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 39.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 25.15000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 75.45000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 39.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 25.15000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 39.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 39.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.45000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 50.30000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 82 CB CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 50 -77.34 13.87 REMARK 500 ASP A 140 53.37 -92.55 REMARK 500 ASN A 175 47.42 -90.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 MET A 1 GLU A 2 129.79 REMARK 500 SER A 47 GLY A 48 -80.19 REMARK 500 SER A 49 LYS A 50 124.05 REMARK 500 THR A 111 LYS A 112 -148.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 28 0.10 SIDE CHAIN REMARK 500 ARG A 93 0.08 SIDE CHAIN REMARK 500 ARG A 131 0.08 SIDE CHAIN REMARK 500 ARG A 148 0.18 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ALF4 IS STABILIZED IN SOLUTION BY THE LOW PH USED FOR REMARK 600 CRYSTALLIZATION REMARK 600 REMARK 600 ALF4 IS A SQUARE PLANAR TRANSITION STATE ANALOG OF THE REMARK 600 PHOSPHORYL GROUP BEING TRANSFERRED. REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ALF A 499 AL REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 148 NH2 REMARK 620 2 ALF A 499 F1 48.5 REMARK 620 3 ALF A 499 F2 129.5 177.8 REMARK 620 4 ALF A 499 F3 102.8 87.9 93.6 REMARK 620 5 ALF A 499 F4 77.3 91.6 86.9 179.3 REMARK 620 6 ARG A 148 NH1 36.7 57.3 120.6 137.6 42.3 REMARK 620 7 ADP A 195 O3B 140.7 94.7 87.0 86.5 93.0 117.0 REMARK 620 8 ADP A 195 O2B 163.0 119.6 62.6 61.9 117.9 154.1 38.1 REMARK 620 9 C5P A 196 O3P 51.1 94.3 84.3 84.3 96.3 75.9 166.9 128.8 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 500 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 195 O2B REMARK 620 2 HOH A 198 O 86.9 REMARK 620 3 HOH A 215 O 174.7 98.1 REMARK 620 4 HOH A 220 O 85.0 163.9 89.7 REMARK 620 5 HOH A 227 O 91.1 77.3 88.3 89.0 REMARK 620 6 ALF A 499 F2 94.2 104.4 86.3 90.0 174.5 REMARK 620 7 ALF A 499 F3 76.3 55.1 108.1 135.3 130.9 52.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ALF A 499 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 195 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C5P A 196 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1UKD RELATED DB: PDB REMARK 900 RELATED ID: 2UKD RELATED DB: PDB REMARK 900 RELATED ID: 4UKD RELATED DB: PDB REMARK 900 RELATED ID: 5UKD RELATED DB: PDB DBREF 1QF9 A 1 194 UNP P20425 KCY_DICDI 1 194 SEQRES 1 A 194 MET GLU LYS SER LYS PRO ASN VAL VAL PHE VAL LEU GLY SEQRES 2 A 194 GLY PRO GLY SER GLY LYS GLY THR GLN CYS ALA ASN ILE SEQRES 3 A 194 VAL ARG ASP PHE GLY TRP VAL HIS LEU SER ALA GLY ASP SEQRES 4 A 194 LEU LEU ARG GLN GLU GLN GLN SER GLY SER LYS ASP GLY SEQRES 5 A 194 GLU MET ILE ALA THR MET ILE LYS ASN GLY GLU ILE VAL SEQRES 6 A 194 PRO SER ILE VAL THR VAL LYS LEU LEU LYS ASN ALA ILE SEQRES 7 A 194 ASP ALA ASN GLN GLY LYS ASN PHE LEU VAL ASP GLY PHE SEQRES 8 A 194 PRO ARG ASN GLU GLU ASN ASN ASN SER TRP GLU GLU ASN SEQRES 9 A 194 MET LYS ASP PHE VAL ASP THR LYS PHE VAL LEU PHE PHE SEQRES 10 A 194 ASP CYS PRO GLU GLU VAL MET THR GLN ARG LEU LEU LYS SEQRES 11 A 194 ARG GLY GLU SER SER GLY ARG SER ASP ASP ASN ILE GLU SEQRES 12 A 194 SER ILE LYS LYS ARG PHE ASN THR PHE ASN VAL GLN THR SEQRES 13 A 194 LYS LEU VAL ILE ASP HIS TYR ASN LYS PHE ASP LYS VAL SEQRES 14 A 194 LYS ILE ILE PRO ALA ASN ARG ASP VAL ASN GLU VAL TYR SEQRES 15 A 194 ASN ASP VAL GLU ASN LEU PHE LYS SER MET GLY PHE HET ALF A 499 5 HET MG A 500 1 HET ADP A 195 27 HET C5P A 196 21 HETNAM ALF TETRAFLUOROALUMINATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM C5P CYTIDINE-5'-MONOPHOSPHATE FORMUL 2 ALF AL F4 1- FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 C5P C9 H14 N3 O8 P FORMUL 6 HOH *181(H2 O) HELIX 1 1 LYS A 19 PHE A 30 1 12 HELIX 2 2 ALA A 37 GLN A 46 1 10 HELIX 3 3 GLY A 52 LYS A 60 1 9 HELIX 4 4 SER A 67 ASP A 79 1 13 HELIX 5 5 GLU A 95 MET A 105 1 11 HELIX 6 6 GLU A 121 GLU A 133 1 13 HELIX 7 7 ILE A 142 VAL A 154 1 13 HELIX 8 8 THR A 156 PHE A 166 1 11 HELIX 9 9 VAL A 178 SER A 191 1 14 SHEET 1 A 5 VAL A 33 SER A 36 0 SHEET 2 A 5 PHE A 86 ASP A 89 1 N LEU A 87 O VAL A 33 SHEET 3 A 5 PRO A 6 GLY A 13 1 N VAL A 9 O PHE A 86 SHEET 4 A 5 VAL A 109 ASP A 118 1 N ASP A 110 O PRO A 6 SHEET 5 A 5 VAL A 169 PRO A 173 1 N LYS A 170 O VAL A 114 LINK NH2 ARG A 148 AL ALF A 499 1555 1555 3.68 LINK NH1 ARG A 148 AL ALF A 499 1555 1555 3.65 LINK O3B ADP A 195 AL ALF A 499 1555 1555 2.00 LINK O2B ADP A 195 AL ALF A 499 1555 1555 3.70 LINK O2B ADP A 195 MG MG A 500 1555 1555 2.22 LINK O3P C5P A 196 AL ALF A 499 1555 1555 2.06 LINK O HOH A 198 MG MG A 500 1555 1555 2.42 LINK O HOH A 215 MG MG A 500 1555 1555 2.35 LINK O HOH A 220 MG MG A 500 1555 1555 2.38 LINK O HOH A 227 MG MG A 500 1555 1555 2.31 LINK F2 ALF A 499 MG MG A 500 1555 1555 2.27 LINK AL ALF A 499 MG MG A 500 1555 1555 3.41 LINK F3 ALF A 499 MG MG A 500 1555 1555 2.99 CISPEP 1 PHE A 91 PRO A 92 0 -1.62 SITE 1 AC1 11 PRO A 15 GLY A 16 LYS A 19 ARG A 93 SITE 2 AC1 11 ARG A 131 ARG A 137 ARG A 148 ADP A 195 SITE 3 AC1 11 C5P A 196 HOH A 198 MG A 500 SITE 1 AC2 6 ADP A 195 HOH A 198 HOH A 215 HOH A 220 SITE 2 AC2 6 HOH A 227 ALF A 499 SITE 1 AC3 19 GLY A 16 SER A 17 GLY A 18 LYS A 19 SITE 2 AC3 19 GLY A 20 THR A 21 ARG A 127 ARG A 131 SITE 3 AC3 19 ARG A 176 VAL A 178 HOH A 216 HOH A 220 SITE 4 AC3 19 HOH A 232 HOH A 239 ALF A 499 MG A 500 SITE 5 AC3 19 HOH A 606 HOH A 778 HOH A 891 SITE 1 AC4 21 GLY A 38 LEU A 41 ARG A 42 ILE A 59 SITE 2 AC4 21 GLU A 63 ILE A 64 VAL A 65 GLY A 90 SITE 3 AC4 21 PHE A 91 ARG A 93 ASN A 97 ARG A 137 SITE 4 AC4 21 ASP A 139 ARG A 148 HOH A 198 HOH A 200 SITE 5 AC4 21 HOH A 208 HOH A 212 HOH A 215 ALF A 499 SITE 6 AC4 21 HOH A 727 CRYST1 78.000 78.000 100.600 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012820 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012820 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009940 0.00000