HEADER OXIDOREDUCTASE 12-APR-99 1QFJ TITLE CRYSTAL STRUCTURE OF NAD(P)H:FLAVIN OXIDOREDUCTASE FROM ESCHERICHIA TITLE 2 COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (FLAVIN REDUCTASE); COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: DISULFIDE LINKS BETWEEN MOLECULES A AND D AS WELL AS B COMPND 6 AND C RESPECTIVELY SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: JM109; SOURCE 5 CELL: BACTERIAL; SOURCE 6 CELLULAR_LOCATION: CYTOPLASM; SOURCE 7 GENE: FRE; SOURCE 8 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 11 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 12 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 13 EXPRESSION_SYSTEM_PLASMID: PEE1001; SOURCE 14 EXPRESSION_SYSTEM_GENE: FRE KEYWDS RIBOFLAVIN, FLAVIN REDUCTASE, FERREDOXIN REDUCTASE SUPERFAMILY, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.INGELMAN,S.RAMASWAMY,V.NIVIERE,M.FONTECAVE,H.EKLUND REVDAT 4 27-DEC-23 1QFJ 1 REMARK REVDAT 3 13-JUL-11 1QFJ 1 VERSN REVDAT 2 24-FEB-09 1QFJ 1 VERSN REVDAT 1 01-JUN-99 1QFJ 0 JRNL AUTH M.INGELMAN,S.RAMASWAMY,V.NIVIERE,M.FONTECAVE,H.EKLUND JRNL TITL CRYSTAL STRUCTURE OF NAD(P)H:FLAVIN OXIDOREDUCTASE FROM JRNL TITL 2 ESCHERICHIA COLI. JRNL REF BIOCHEMISTRY V. 38 7040 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10353815 JRNL DOI 10.1021/BI982849M REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 54241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.239 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1569 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7176 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 304 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.007 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.027 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.027 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.018 ; 0.030 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.097 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.189 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.242 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : 0.179 ; 0.300 REMARK 3 H-BOND (X-H...Y) (A) : 0.000 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : 15.000; NULL REMARK 3 PLANAR (DEGREES) : 3.200 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 21.500; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 36.000; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.615 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.580 ; 5.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.480 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.052 ; 8.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QFJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-APR-99. REMARK 100 THE DEPOSITION ID IS D_1000000829. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JUN-95 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8640 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.2 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.23500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15 % PEG 4000, 0.5 M NACL, 100 MM BIS REMARK 280 -TRIS PROPANE PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.60000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 105.20500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.46000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 105.20500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.60000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.46000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 66 REMARK 465 SER A 67 REMARK 465 GLU A 68 REMARK 465 ILE A 69 REMARK 465 ASN A 70 REMARK 465 LEU A 71 REMARK 465 ALA B 66 REMARK 465 SER B 67 REMARK 465 GLU B 68 REMARK 465 ILE B 69 REMARK 465 ASN B 70 REMARK 465 LEU B 71 REMARK 465 ALA C 66 REMARK 465 SER C 67 REMARK 465 GLU C 68 REMARK 465 ILE C 69 REMARK 465 ASN C 70 REMARK 465 LEU C 71 REMARK 465 ALA D 66 REMARK 465 SER D 67 REMARK 465 GLU D 68 REMARK 465 ILE D 69 REMARK 465 ASN D 70 REMARK 465 LEU D 71 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 640 O HOH A 660 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 31 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 210 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 220 CD - NE - CZ ANGL. DEV. = 11.8 DEGREES REMARK 500 ARG A 220 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 220 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 223 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ASP B 55 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG B 98 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG B 98 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG B 98 NE - CZ - NH2 ANGL. DEV. = -6.1 DEGREES REMARK 500 ARG B 127 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 131 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG B 210 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG B 210 NE - CZ - NH2 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG B 217 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG C 31 CD - NE - CZ ANGL. DEV. = 15.5 DEGREES REMARK 500 ARG C 31 NE - CZ - NH1 ANGL. DEV. = 7.0 DEGREES REMARK 500 ARG C 31 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG C 223 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG D 19 CD - NE - CZ ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG D 98 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG D 140 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG D 177 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG D 177 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG D 210 NE - CZ - NH1 ANGL. DEV. = -4.0 DEGREES REMARK 500 ARG D 210 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 217 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG D 217 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 14 -150.96 -121.03 REMARK 500 PRO A 54 21.51 -67.23 REMARK 500 ASP A 55 50.51 -155.16 REMARK 500 GLU A 56 69.40 -107.74 REMARK 500 LYS A 57 -76.63 -19.09 REMARK 500 ALA A 95 37.18 -99.76 REMARK 500 ASP A 100 124.65 -30.16 REMARK 500 THR A 112 -17.52 105.49 REMARK 500 LEU B 3 -54.14 -121.60 REMARK 500 SER B 4 104.02 92.57 REMARK 500 PHE B 59 169.15 179.40 REMARK 500 ASP B 83 -41.13 -150.59 REMARK 500 ASP B 100 133.15 -30.58 REMARK 500 CYS B 149 -56.09 -29.91 REMARK 500 ALA B 172 -91.07 -15.44 REMARK 500 ASP C 100 125.50 -36.94 REMARK 500 ALA C 172 -82.86 -17.24 REMARK 500 ASP D 100 125.89 -34.05 REMARK 500 GLU D 102 -167.21 -107.26 REMARK 500 ARG D 103 112.18 70.92 REMARK 500 ALA D 172 -81.46 -27.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 604 DBREF 1QFJ A 1 232 UNP P23486 FRE_ECOLI 1 232 DBREF 1QFJ B 1 232 UNP P23486 FRE_ECOLI 1 232 DBREF 1QFJ C 1 232 UNP P23486 FRE_ECOLI 1 232 DBREF 1QFJ D 1 232 UNP P23486 FRE_ECOLI 1 232 SEQRES 1 A 232 THR THR LEU SER CYS LYS VAL THR SER VAL GLU ALA ILE SEQRES 2 A 232 THR ASP THR VAL TYR ARG VAL ARG ILE VAL PRO ASP ALA SEQRES 3 A 232 ALA PHE SER PHE ARG ALA GLY GLN TYR LEU MET VAL VAL SEQRES 4 A 232 MET ASP GLU ARG ASP LYS ARG PRO PHE SER MET ALA SER SEQRES 5 A 232 THR PRO ASP GLU LYS GLY PHE ILE GLU LEU HIS ILE GLY SEQRES 6 A 232 ALA SER GLU ILE ASN LEU TYR ALA LYS ALA VAL MET ASP SEQRES 7 A 232 ARG ILE LEU LYS ASP HIS GLN ILE VAL VAL ASP ILE PRO SEQRES 8 A 232 HIS GLY GLU ALA TRP LEU ARG ASP ASP GLU GLU ARG PRO SEQRES 9 A 232 MET ILE LEU ILE ALA GLY GLY THR GLY PHE SER TYR ALA SEQRES 10 A 232 ARG SER ILE LEU LEU THR ALA LEU ALA ARG ASN PRO ASN SEQRES 11 A 232 ARG ASP ILE THR ILE TYR TRP GLY GLY ARG GLU GLU GLN SEQRES 12 A 232 HIS LEU TYR ASP LEU CYS GLU LEU GLU ALA LEU SER LEU SEQRES 13 A 232 LYS HIS PRO GLY LEU GLN VAL VAL PRO VAL VAL GLU GLN SEQRES 14 A 232 PRO GLU ALA GLY TRP ARG GLY ARG THR GLY THR VAL LEU SEQRES 15 A 232 THR ALA VAL LEU GLN ASP HIS GLY THR LEU ALA GLU HIS SEQRES 16 A 232 ASP ILE TYR ILE ALA GLY ARG PHE GLU MET ALA LYS ILE SEQRES 17 A 232 ALA ARG ASP LEU PHE CYS SER GLU ARG ASN ALA ARG GLU SEQRES 18 A 232 ASP ARG LEU PHE GLY ASP ALA PHE ALA PHE ILE SEQRES 1 B 232 THR THR LEU SER CYS LYS VAL THR SER VAL GLU ALA ILE SEQRES 2 B 232 THR ASP THR VAL TYR ARG VAL ARG ILE VAL PRO ASP ALA SEQRES 3 B 232 ALA PHE SER PHE ARG ALA GLY GLN TYR LEU MET VAL VAL SEQRES 4 B 232 MET ASP GLU ARG ASP LYS ARG PRO PHE SER MET ALA SER SEQRES 5 B 232 THR PRO ASP GLU LYS GLY PHE ILE GLU LEU HIS ILE GLY SEQRES 6 B 232 ALA SER GLU ILE ASN LEU TYR ALA LYS ALA VAL MET ASP SEQRES 7 B 232 ARG ILE LEU LYS ASP HIS GLN ILE VAL VAL ASP ILE PRO SEQRES 8 B 232 HIS GLY GLU ALA TRP LEU ARG ASP ASP GLU GLU ARG PRO SEQRES 9 B 232 MET ILE LEU ILE ALA GLY GLY THR GLY PHE SER TYR ALA SEQRES 10 B 232 ARG SER ILE LEU LEU THR ALA LEU ALA ARG ASN PRO ASN SEQRES 11 B 232 ARG ASP ILE THR ILE TYR TRP GLY GLY ARG GLU GLU GLN SEQRES 12 B 232 HIS LEU TYR ASP LEU CYS GLU LEU GLU ALA LEU SER LEU SEQRES 13 B 232 LYS HIS PRO GLY LEU GLN VAL VAL PRO VAL VAL GLU GLN SEQRES 14 B 232 PRO GLU ALA GLY TRP ARG GLY ARG THR GLY THR VAL LEU SEQRES 15 B 232 THR ALA VAL LEU GLN ASP HIS GLY THR LEU ALA GLU HIS SEQRES 16 B 232 ASP ILE TYR ILE ALA GLY ARG PHE GLU MET ALA LYS ILE SEQRES 17 B 232 ALA ARG ASP LEU PHE CYS SER GLU ARG ASN ALA ARG GLU SEQRES 18 B 232 ASP ARG LEU PHE GLY ASP ALA PHE ALA PHE ILE SEQRES 1 C 232 THR THR LEU SER CYS LYS VAL THR SER VAL GLU ALA ILE SEQRES 2 C 232 THR ASP THR VAL TYR ARG VAL ARG ILE VAL PRO ASP ALA SEQRES 3 C 232 ALA PHE SER PHE ARG ALA GLY GLN TYR LEU MET VAL VAL SEQRES 4 C 232 MET ASP GLU ARG ASP LYS ARG PRO PHE SER MET ALA SER SEQRES 5 C 232 THR PRO ASP GLU LYS GLY PHE ILE GLU LEU HIS ILE GLY SEQRES 6 C 232 ALA SER GLU ILE ASN LEU TYR ALA LYS ALA VAL MET ASP SEQRES 7 C 232 ARG ILE LEU LYS ASP HIS GLN ILE VAL VAL ASP ILE PRO SEQRES 8 C 232 HIS GLY GLU ALA TRP LEU ARG ASP ASP GLU GLU ARG PRO SEQRES 9 C 232 MET ILE LEU ILE ALA GLY GLY THR GLY PHE SER TYR ALA SEQRES 10 C 232 ARG SER ILE LEU LEU THR ALA LEU ALA ARG ASN PRO ASN SEQRES 11 C 232 ARG ASP ILE THR ILE TYR TRP GLY GLY ARG GLU GLU GLN SEQRES 12 C 232 HIS LEU TYR ASP LEU CYS GLU LEU GLU ALA LEU SER LEU SEQRES 13 C 232 LYS HIS PRO GLY LEU GLN VAL VAL PRO VAL VAL GLU GLN SEQRES 14 C 232 PRO GLU ALA GLY TRP ARG GLY ARG THR GLY THR VAL LEU SEQRES 15 C 232 THR ALA VAL LEU GLN ASP HIS GLY THR LEU ALA GLU HIS SEQRES 16 C 232 ASP ILE TYR ILE ALA GLY ARG PHE GLU MET ALA LYS ILE SEQRES 17 C 232 ALA ARG ASP LEU PHE CYS SER GLU ARG ASN ALA ARG GLU SEQRES 18 C 232 ASP ARG LEU PHE GLY ASP ALA PHE ALA PHE ILE SEQRES 1 D 232 THR THR LEU SER CYS LYS VAL THR SER VAL GLU ALA ILE SEQRES 2 D 232 THR ASP THR VAL TYR ARG VAL ARG ILE VAL PRO ASP ALA SEQRES 3 D 232 ALA PHE SER PHE ARG ALA GLY GLN TYR LEU MET VAL VAL SEQRES 4 D 232 MET ASP GLU ARG ASP LYS ARG PRO PHE SER MET ALA SER SEQRES 5 D 232 THR PRO ASP GLU LYS GLY PHE ILE GLU LEU HIS ILE GLY SEQRES 6 D 232 ALA SER GLU ILE ASN LEU TYR ALA LYS ALA VAL MET ASP SEQRES 7 D 232 ARG ILE LEU LYS ASP HIS GLN ILE VAL VAL ASP ILE PRO SEQRES 8 D 232 HIS GLY GLU ALA TRP LEU ARG ASP ASP GLU GLU ARG PRO SEQRES 9 D 232 MET ILE LEU ILE ALA GLY GLY THR GLY PHE SER TYR ALA SEQRES 10 D 232 ARG SER ILE LEU LEU THR ALA LEU ALA ARG ASN PRO ASN SEQRES 11 D 232 ARG ASP ILE THR ILE TYR TRP GLY GLY ARG GLU GLU GLN SEQRES 12 D 232 HIS LEU TYR ASP LEU CYS GLU LEU GLU ALA LEU SER LEU SEQRES 13 D 232 LYS HIS PRO GLY LEU GLN VAL VAL PRO VAL VAL GLU GLN SEQRES 14 D 232 PRO GLU ALA GLY TRP ARG GLY ARG THR GLY THR VAL LEU SEQRES 15 D 232 THR ALA VAL LEU GLN ASP HIS GLY THR LEU ALA GLU HIS SEQRES 16 D 232 ASP ILE TYR ILE ALA GLY ARG PHE GLU MET ALA LYS ILE SEQRES 17 D 232 ALA ARG ASP LEU PHE CYS SER GLU ARG ASN ALA ARG GLU SEQRES 18 D 232 ASP ARG LEU PHE GLY ASP ALA PHE ALA PHE ILE HET GOL A 601 6 HET GOL B 602 6 HET GOL C 603 6 HET GOL D 604 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 4(C3 H8 O3) FORMUL 9 HOH *304(H2 O) HELIX 1 1 ALA A 73 ASP A 83 1 11 HELIX 2 2 PHE A 114 ARG A 127 1 14 HELIX 3 3 GLU A 142 HIS A 144 5 3 HELIX 4 4 LEU A 148 LYS A 157 1 10 HELIX 5 5 VAL A 181 ASP A 188 1 8 HELIX 6 6 PHE A 203 GLU A 216 1 14 HELIX 7 7 GLU A 221 ARG A 223 5 3 HELIX 8 8 ASP A 227 ALA A 230 5 4 HELIX 9 9 ALA B 73 LEU B 81 1 9 HELIX 10 10 PHE B 114 ARG B 127 1 14 HELIX 11 11 GLU B 142 HIS B 144 5 3 HELIX 12 12 LEU B 148 LYS B 157 1 10 HELIX 13 13 VAL B 181 ASP B 188 1 8 HELIX 14 14 PHE B 203 GLU B 216 1 14 HELIX 15 15 GLU B 221 ARG B 223 5 3 HELIX 16 16 ASP B 227 ALA B 230 5 4 HELIX 17 17 LYS C 74 ASP C 83 1 10 HELIX 18 18 PHE C 114 ARG C 127 1 14 HELIX 19 19 GLU C 142 HIS C 144 5 3 HELIX 20 20 LEU C 148 LYS C 157 1 10 HELIX 21 21 VAL C 181 ASP C 188 1 8 HELIX 22 22 PHE C 203 ARG C 217 1 15 HELIX 23 23 GLU C 221 ARG C 223 5 3 HELIX 24 24 ASP C 227 ALA C 230 5 4 HELIX 25 25 LYS D 74 ASP D 83 1 10 HELIX 26 26 PHE D 114 ARG D 127 1 14 HELIX 27 27 GLU D 142 HIS D 144 5 3 HELIX 28 28 LEU D 148 LYS D 157 1 10 HELIX 29 29 VAL D 181 ASP D 188 1 8 HELIX 30 30 PHE D 203 GLU D 216 1 14 HELIX 31 31 GLU D 221 ARG D 223 5 3 HELIX 32 32 ASP D 227 PHE D 229 5 3 SHEET 1 A 4 GLN A 85 ASP A 89 0 SHEET 2 A 4 THR A 2 ALA A 12 -1 N CYS A 5 O ILE A 86 SHEET 3 A 4 TYR A 18 PRO A 24 -1 N VAL A 23 O LYS A 6 SHEET 4 A 4 ILE A 60 ILE A 64 -1 N ILE A 64 O TYR A 18 SHEET 1 B 2 TYR A 35 VAL A 39 0 SHEET 2 B 2 LYS A 45 SER A 49 -1 N PHE A 48 O LEU A 36 SHEET 1 C 4 ASP A 196 ALA A 200 0 SHEET 2 C 4 MET A 105 GLY A 110 1 N ILE A 106 O ASP A 196 SHEET 3 C 4 ILE A 133 GLY A 139 1 N THR A 134 O MET A 105 SHEET 4 C 4 LEU A 161 VAL A 167 1 N GLN A 162 O ILE A 133 SHEET 1 D 3 ILE B 60 ILE B 64 0 SHEET 2 D 3 TYR B 18 PRO B 24 -1 N ILE B 22 O ILE B 60 SHEET 3 D 3 CYS B 5 ALA B 12 -1 N GLU B 11 O ARG B 19 SHEET 1 E 2 TYR B 35 VAL B 39 0 SHEET 2 E 2 LYS B 45 SER B 49 -1 N PHE B 48 O LEU B 36 SHEET 1 F 4 ASP B 196 ALA B 200 0 SHEET 2 F 4 MET B 105 ALA B 109 1 N ILE B 106 O ASP B 196 SHEET 3 F 4 ILE B 133 GLY B 139 1 N THR B 134 O MET B 105 SHEET 4 F 4 LEU B 161 VAL B 167 1 N GLN B 162 O ILE B 133 SHEET 1 G 4 GLN C 85 ASP C 89 0 SHEET 2 G 4 THR C 2 ALA C 12 -1 N CYS C 5 O ILE C 86 SHEET 3 G 4 TYR C 18 PRO C 24 -1 N VAL C 23 O LYS C 6 SHEET 4 G 4 ILE C 60 ILE C 64 -1 N ILE C 64 O TYR C 18 SHEET 1 H 2 TYR C 35 VAL C 39 0 SHEET 2 H 2 LYS C 45 SER C 49 -1 N PHE C 48 O LEU C 36 SHEET 1 I 4 HIS C 195 ALA C 200 0 SHEET 2 I 4 PRO C 104 ALA C 109 1 N PRO C 104 O ASP C 196 SHEET 3 I 4 ILE C 133 GLY C 139 1 N THR C 134 O MET C 105 SHEET 4 I 4 LEU C 161 VAL C 167 1 N GLN C 162 O ILE C 133 SHEET 1 J 4 GLN D 85 ASP D 89 0 SHEET 2 J 4 THR D 2 ALA D 12 -1 N CYS D 5 O ILE D 86 SHEET 3 J 4 TYR D 18 PRO D 24 -1 N VAL D 23 O LYS D 6 SHEET 4 J 4 ILE D 60 ILE D 64 -1 N ILE D 64 O TYR D 18 SHEET 1 K 4 ASP D 196 GLY D 201 0 SHEET 2 K 4 MET D 105 GLY D 110 1 N ILE D 106 O ASP D 196 SHEET 3 K 4 ILE D 133 GLY D 139 1 N THR D 134 O MET D 105 SHEET 4 K 4 LEU D 161 VAL D 167 1 N GLN D 162 O ILE D 133 SHEET 1 L 2 TYR D 35 ASP D 41 0 SHEET 2 L 2 ASP D 44 SER D 49 -1 N PHE D 48 O LEU D 36 SSBOND 1 CYS A 149 CYS D 149 1555 1555 2.78 SSBOND 2 CYS B 149 CYS C 149 1555 2664 2.99 CISPEP 1 ILE A 90 PRO A 91 0 -1.51 CISPEP 2 ILE B 90 PRO B 91 0 1.97 CISPEP 3 ILE C 90 PRO C 91 0 1.09 CISPEP 4 ILE D 90 PRO D 91 0 -0.40 SITE 1 AC1 5 TYR A 35 ASP A 227 HOH A 700 HOH A 701 SITE 2 AC1 5 HOH A 702 SITE 1 AC2 5 PRO B 47 SER B 49 ASP B 227 HOH B 641 SITE 2 AC2 5 HOH B 642 SITE 1 AC3 5 TYR C 35 PRO C 47 SER C 49 HOH C 674 SITE 2 AC3 5 HOH C 676 SITE 1 AC4 6 TYR D 35 PRO D 47 ASP D 227 HOH D 689 SITE 2 AC4 6 HOH D 690 HOH D 691 CRYST1 51.200 96.920 210.410 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019531 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010318 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004753 0.00000 MTRIX1 1 0.933940 -0.259340 0.245950 -6.86784 1 MTRIX2 1 -0.259260 -0.965230 -0.033310 119.95302 1 MTRIX3 1 0.246047 -0.032650 -0.968700 181.00014 1 MTRIX1 2 0.287400 0.952830 0.097450 101.64164 1 MTRIX2 2 -0.924350 0.302580 -0.232400 -8.00360 1 MTRIX3 2 -0.250930 -0.023290 0.967720 65.13510 1 MTRIX1 3 0.410690 0.845290 0.341770 -55.87328 1 MTRIX2 3 0.848390 -0.491590 0.196360 17.66156 1 MTRIX3 3 0.333990 0.209315 -0.919000 213.32475 1