HEADER VIRUS/IMMUNE SYSTEM 23-APR-99 1QGC TITLE STRUCTURE OF THE COMPLEX OF A FAB FRAGMENT OF A NEUTRALIZING ANTIBODY TITLE 2 WITH FOOT AND MOUTH DISEASE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (VIRUS CAPSID PROTEIN VP1); COMPND 3 CHAIN: 1; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PROTEIN (VIRUS CAPSID PROTEIN VP2); COMPND 6 CHAIN: 2; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PROTEIN (VIRUS CAPSID PROTEIN VP3); COMPND 9 CHAIN: 3; COMPND 10 MOL_ID: 4; COMPND 11 MOLECULE: PROTEIN (IMMUNOGLOBULIN LIGHT CHAIN); COMPND 12 CHAIN: 4; COMPND 13 FRAGMENT: FAB; COMPND 14 MOL_ID: 5; COMPND 15 MOLECULE: PROTEIN (IMMUNOGLOBULIN HEAVY CHAIN); COMPND 16 CHAIN: A; COMPND 17 FRAGMENT: FAB; COMPND 18 MOL_ID: 6; COMPND 19 MOLECULE: PROTEIN (GH-LOOP FROM VIRUS CAPSID PROTEIN VP1); COMPND 20 CHAIN: 5; COMPND 21 FRAGMENT: RESIDUES 133-156 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 3 ORGANISM_TAXID: 12116; SOURCE 4 STRAIN: SEROTYPE C; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 7 ORGANISM_TAXID: 12116; SOURCE 8 STRAIN: SEROTYPE C; SOURCE 9 MOL_ID: 3; SOURCE 10 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 11 ORGANISM_TAXID: 12116; SOURCE 12 STRAIN: SEROTYPE C; SOURCE 13 MOL_ID: 4; SOURCE 14 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 15 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 16 ORGANISM_TAXID: 10090; SOURCE 17 MOL_ID: 5; SOURCE 18 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 19 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 20 ORGANISM_TAXID: 10090; SOURCE 21 MOL_ID: 6; SOURCE 22 ORGANISM_SCIENTIFIC: FOOT-AND-MOUTH DISEASE VIRUS - TYPE C; SOURCE 23 ORGANISM_TAXID: 12116; SOURCE 24 STRAIN: SEROTYPE C KEYWDS VIRUS-ANTIBODY COMPLEX, ICOSAHEDRAL VIRUS, VIRUS-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA ELECTRON MICROSCOPY AUTHOR I.FITA REVDAT 8 05-MAR-25 1QGC 1 REMARK REVDAT 7 27-DEC-23 1QGC 1 REMARK SEQADV REVDAT 6 10-APR-19 1QGC 1 DBREF LINK REVDAT 5 18-JUL-18 1QGC 1 REMARK DBREF REVDAT 4 14-JAN-15 1QGC 1 ATOM COMPND DBREF HELIX REVDAT 4 2 1 REMARK SEQADV SEQRES SHEET REVDAT 4 3 1 SOURCE SSBOND TITLE REVDAT 3 19-OCT-11 1QGC 1 HETATM VERSN REVDAT 2 24-FEB-09 1QGC 1 VERSN REVDAT 1 26-JAN-00 1QGC 0 JRNL AUTH E.A.HEWAT,N.VERDAGUER,I.FITA,W.BLAKEMORE,S.BROOKES,A.KING, JRNL AUTH 2 J.NEWMAN,E.DOMINGO,M.G.MATEU,D.I.STUART JRNL TITL STRUCTURE OF THE COMPLEX OF AN FAB FRAGMENT OF A JRNL TITL 2 NEUTRALIZING ANTIBODY WITH FOOT-AND-MOUTH DISEASE VIRUS: JRNL TITL 3 POSITIONING OF A HIGHLY MOBILE ANTIGENIC LOOP. JRNL REF EMBO J. V. 16 1492 1997 JRNL REFN ISSN 0261-4189 JRNL PMID 9130694 JRNL DOI 10.1093/EMBOJ/16.7.1492 REMARK 2 REMARK 2 RESOLUTION. 30.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : GAP, X-PLOR, MRC REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : 1FMD REMARK 3 REFINEMENT SPACE : REAL REMARK 3 REFINEMENT PROTOCOL : NULL REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : DETAILS--THE ATOMIC MODEL WAS GENERATED USING REMARK 3 THE 3D MAP DETERMINED BY CRYO-ELECTRON MICROSCOPY. X-RAY ATOMIC REMARK 3 STRUCTURES WERE AVAILABLE FOR THE INTACT PARTICLE OF FMDV-C AND REMARK 3 THE SD6 FAB CO-CRYSTALLIZED WITH A SYNTHETIC PEPTIDE REMARK 3 CORRESPONDING TO THE DOMINANT ANTIGENIC LOOP, THE GH LOOP, FROM REMARK 3 THE VIRAL CAPSIDE PROTEIN VP1. THE ATOMIC MODEL WAS OBTAINED BY REMARK 3 DOCKING THE TWO CRYSTALLOGRAPHIC STRUCTURES IN THE RECONSTRUCTED REMARK 3 EM MAP. FITTING WAS DONE SIMULTANEOUSLY IN REAL AND RECIPROCAL REMARK 3 SPACE. IN REAL SPACE THE CALCULATED ELECTRON DENSITY FOR THE REMARK 3 STARTING MODELS WERE FITTED INTO THE CRYO-EM DENSITY BY A REMARK 3 STEEPEST DESCENT PROCEDURE WHICH OPTIMIZED THE LINEAR REMARK 3 CORRELATION COEFFICIENT BETWEEN THE TWO DISTRIBUTION (GAP- REMARK 3 J.GRIMES,D.STUART, UNPUBLISHED) FOR THE RECIPROCAL SPACE FITTING REMARK 3 THE STRUCTURE FACTORS CORRESPONDING TO THE CRYO-EM DENSITY OF REMARK 3 THE COMPLEX WERE CALCULATED BY INVERSE FOURIER TRANSFORMATIONS REMARK 3 AND THESE FACTORS AND PHASES WERE USED TO REFINE THE X-RAY REMARK 3 STRUCTURES, BY RIGID BODY MINIMIZATION, USING X-PLOR (BRUNGER, REMARK 3 ET.AL., 1993, YALE UNIVERSITY) REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 30.00 REMARK 3 NUMBER OF PARTICLES : NULL REMARK 3 CTF CORRECTION METHOD : NULL REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: NULL REMARK 4 REMARK 4 1QGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-99. REMARK 100 THE DEPOSITION ID IS D_1000001070. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : VITREOUS ICE (CRYO EM) REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : FAB FRAGMENT OF A NEUTRALIZING REMARK 245 ANTIBODY WITH FOOT AND MOUTH REMARK 245 DISEASE VIRUS REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : NULL REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : JEOL 2000EXII REMARK 245 DETECTOR TYPE : KODAK SO-163 FILM REMARK 245 MINIMUM DEFOCUS (NM) : 1800.00 REMARK 245 MAXIMUM DEFOCUS (NM) : 3000.00 REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2000.00 REMARK 245 ILLUMINATION MODE : FLOOD BEAM REMARK 245 NOMINAL MAGNIFICATION : 30000 REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : NULL REMARK 245 ACCELERATION VOLTAGE (KV) : 100 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: 1, 2, 3, 4, A, 5 REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR 1 137 REMARK 465 THR 1 138 REMARK 465 THR 1 139 REMARK 465 TYR 1 140 REMARK 465 THR 1 141 REMARK 465 ALA 1 142 REMARK 465 SER 1 143 REMARK 465 ALA 1 144 REMARK 465 ARG 1 145 REMARK 465 GLY 1 146 REMARK 465 ASP 1 147 REMARK 465 LEU 1 148 REMARK 465 ALA 1 149 REMARK 465 HIS 1 150 REMARK 465 LEU 1 151 REMARK 465 THR 1 152 REMARK 465 THR 1 153 REMARK 465 THR 1 154 REMARK 465 HIS 1 155 REMARK 465 ALA 1 156 REMARK 465 ARG 1 157 REMARK 465 HIS 1 158 REMARK 465 LEU 1 159 REMARK 465 PRO 1 160 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP 2 1 CG OD1 OD2 REMARK 470 LYS 2 2 CG CD CE NZ REMARK 470 LYS 2 3 CG CD CE NZ REMARK 470 THR 2 4 OG1 CG2 REMARK 470 GLU 2 5 CG CD OE1 OE2 REMARK 470 GLU 2 6 CG CD OE1 OE2 REMARK 470 THR 2 7 OG1 CG2 REMARK 470 THR 2 8 OG1 CG2 REMARK 470 LEU 2 9 CG CD1 CD2 REMARK 470 LEU 2 10 CG CD1 CD2 REMARK 470 OCS 4 218 OD1 OD3 REMARK 470 ARG 5 153 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE2 PHE 1 163 CG LEU 5 155 0.90 REMARK 500 CD2 PHE 1 163 CG LEU 5 155 1.11 REMARK 500 CD2 PHE 1 163 CD2 LEU 5 155 1.31 REMARK 500 C GLY 1 132 N THR 5 133 1.32 REMARK 500 C ARG 4 112 CA ALA 4 113 1.37 REMARK 500 O THR 5 148 CB ALA 5 152 1.40 REMARK 500 CA ARG 4 112 N ALA 4 113 1.45 REMARK 500 N THR 1 161 C PRO 5 156 1.48 REMARK 500 N ALA A 120 N ALA A 121 1.52 REMARK 500 C ALA A 120 CA ALA A 121 1.54 REMARK 500 CA ALA A 120 N ALA A 121 1.55 REMARK 500 CE2 PHE 1 163 CD1 LEU 5 155 1.59 REMARK 500 CE2 PHE 1 163 CD2 LEU 5 155 1.69 REMARK 500 O ARG 4 112 C ALA 4 113 1.74 REMARK 500 O TYR 5 136 CG2 THR 5 150 1.75 REMARK 500 O ARG 4 112 CA ALA 4 113 1.77 REMARK 500 O ALA 5 135 CB TYR 5 136 1.79 REMARK 500 CD2 PHE 1 163 CB LEU 5 155 1.83 REMARK 500 O THR 5 149 OG1 THR 5 154 1.87 REMARK 500 C SER A 119 N ALA A 121 1.88 REMARK 500 CG ASP 4 109 OH TYR 4 177 1.96 REMARK 500 OG1 THR 5 133 CA LEU 5 147 2.01 REMARK 500 O TYR 5 136 CB THR 5 150 2.04 REMARK 500 N TYR 5 136 OG1 THR 5 150 2.06 REMARK 500 OG1 THR 5 133 N THR 5 148 2.06 REMARK 500 OD1 ASP 4 109 OH TYR 4 177 2.07 REMARK 500 NZ LYS A 13 C ALA A 121 2.07 REMARK 500 NZ LYS A 13 O ALA A 121 2.09 REMARK 500 OG1 THR 5 133 C LEU 5 147 2.10 REMARK 500 OG1 THR 5 133 N LEU 5 147 2.11 REMARK 500 CZ PHE 1 163 CG LEU 5 155 2.11 REMARK 500 C THR 5 148 CB ALA 5 152 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER 4 28 CA SER 4 28 CB 0.096 REMARK 500 HIS 4 38 NE2 HIS 4 38 CD2 -0.068 REMARK 500 ARG 4 112 C ALA 4 113 N -0.404 REMARK 500 HIS 4 193 NE2 HIS 4 193 CD2 -0.069 REMARK 500 CYS A 96 CA CYS A 96 CB -0.078 REMARK 500 HIS A 171 NE2 HIS A 171 CD2 -0.071 REMARK 500 HIS A 206 NE2 HIS A 206 CD2 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO 2 150 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 THR 4 20 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 MET 4 37 CG - SD - CE ANGL. DEV. = 10.5 DEGREES REMARK 500 TRP 4 39 CD1 - CG - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 TRP 4 39 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 LEU 4 51 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG 4 54 CA - CB - CG ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG 4 54 NE - CZ - NH1 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG 4 54 N - CA - C ANGL. DEV. = -18.0 DEGREES REMARK 500 GLY 4 61 N - CA - C ANGL. DEV. = -15.8 DEGREES REMARK 500 TYR 4 90 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 PRO 4 99 N - CD - CG ANGL. DEV. = -8.9 DEGREES REMARK 500 LEU 4 110 CB - CG - CD1 ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG 4 112 CA - C - N ANGL. DEV. = -49.9 DEGREES REMARK 500 ARG 4 112 O - C - N ANGL. DEV. = 13.2 DEGREES REMARK 500 ALA 4 113 C - N - CA ANGL. DEV. = -56.0 DEGREES REMARK 500 TRP 4 152 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP 4 152 CG - CD1 - NE1 ANGL. DEV. = -6.0 DEGREES REMARK 500 TRP 4 152 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG 4 159 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 TRP 4 167 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 TYR 4 196 CB - CG - CD2 ANGL. DEV. = -5.2 DEGREES REMARK 500 TRP A 36 CD1 - CG - CD2 ANGL. DEV. = 7.6 DEGREES REMARK 500 TRP A 36 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 GLN A 39 CA - CB - CG ANGL. DEV. = -16.1 DEGREES REMARK 500 GLU A 42 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 LEU A 45 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 TRP A 47 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 47 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TYR A 57 N - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 TYR A 59 CB - CG - CD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 67 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 VAL A 97 CG1 - CB - CG2 ANGL. DEV. = -9.9 DEGREES REMARK 500 ARG A 98 CB - CG - CD ANGL. DEV. = -17.5 DEGREES REMARK 500 ARG A 98 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 GLU A 100 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 105 CA - CB - CG ANGL. DEV. = 13.4 DEGREES REMARK 500 TYR A 109 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 TRP A 110 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP A 110 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 ALA A 120 CA - C - N ANGL. DEV. = -51.8 DEGREES REMARK 500 ALA A 120 O - C - N ANGL. DEV. = 30.2 DEGREES REMARK 500 ALA A 121 C - N - CA ANGL. DEV. = -55.8 DEGREES REMARK 500 THR A 124 CA - CB - OG1 ANGL. DEV. = -13.0 DEGREES REMARK 500 THR A 124 CA - CB - CG2 ANGL. DEV. = 9.3 DEGREES REMARK 500 PRO A 156 CA - N - CD ANGL. DEV. = -8.5 DEGREES REMARK 500 TRP A 161 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 161 CE2 - CD2 - CG ANGL. DEV. = -6.0 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 65 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN 1 23 -160.53 -102.54 REMARK 500 ARG 1 27 44.01 -79.55 REMARK 500 ASP 1 46 -159.73 -111.77 REMARK 500 PRO 1 104 93.78 -49.96 REMARK 500 LYS 1 109 100.05 -166.32 REMARK 500 TYR 1 130 130.74 173.18 REMARK 500 THR 1 131 50.48 -117.55 REMARK 500 CYS 1 187 111.84 66.82 REMARK 500 PRO 1 193 -146.19 -95.29 REMARK 500 THR 2 4 -128.11 -107.67 REMARK 500 GLU 2 5 -69.40 72.94 REMARK 500 GLU 2 6 -78.96 174.32 REMARK 500 THR 2 7 -80.65 -138.97 REMARK 500 THR 2 8 172.59 79.16 REMARK 500 LEU 2 10 -134.37 -84.79 REMARK 500 ASP 2 12 -151.67 -155.91 REMARK 500 HIS 2 21 41.31 -87.45 REMARK 500 SER 2 24 92.56 -162.41 REMARK 500 GLN 2 27 28.30 -75.48 REMARK 500 SER 2 28 53.17 -158.84 REMARK 500 ASP 2 41 -175.42 -62.84 REMARK 500 SER 2 49 27.58 37.53 REMARK 500 GLU 2 59 78.94 -65.27 REMARK 500 LEU 2 66 -73.89 -109.44 REMARK 500 ASN 2 74 -161.94 -110.39 REMARK 500 HIS 2 85 -148.13 74.92 REMARK 500 GLN 2 115 -4.10 -54.80 REMARK 500 ASP 2 131 105.03 65.06 REMARK 500 GLU 2 136 23.39 -74.09 REMARK 500 GLN 2 139 46.92 -108.31 REMARK 500 GLN 2 146 132.97 -171.79 REMARK 500 THR 2 152 -70.26 -101.99 REMARK 500 LYS 2 172 3.50 -61.94 REMARK 500 GLN 2 173 39.17 -173.63 REMARK 500 HIS 2 174 121.33 159.18 REMARK 500 ASN 2 190 -156.88 46.02 REMARK 500 MET 3 14 -80.20 -33.97 REMARK 500 VAL 3 15 101.23 73.70 REMARK 500 ALA 3 25 -37.57 -150.12 REMARK 500 GLU 3 58 89.61 61.33 REMARK 500 ASN 3 59 -9.49 54.93 REMARK 500 THR 3 66 103.83 -58.86 REMARK 500 GLN 3 71 57.16 -61.72 REMARK 500 ALA 3 83 139.29 -31.91 REMARK 500 MET 3 86 -79.38 -73.83 REMARK 500 SER 3 87 -56.99 33.55 REMARK 500 TRP 3 147 144.21 -172.14 REMARK 500 VAL 3 180 -31.34 -36.60 REMARK 500 HIS 3 191 -177.85 -174.73 REMARK 500 LYS 3 193 13.32 58.33 REMARK 500 REMARK 500 THIS ENTRY HAS 94 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN 4 46 PRO 4 47 146.96 REMARK 500 ASP 4 80 PRO 4 81 32.64 REMARK 500 VAL 4 98 PRO 4 99 46.77 REMARK 500 GLU A 155 PRO A 156 35.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR 3 30 0.07 SIDE CHAIN REMARK 500 TYR 4 90 0.08 SIDE CHAIN REMARK 500 TYR 4 190 0.09 SIDE CHAIN REMARK 500 TYR A 109 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ARG 4 112 23.79 REMARK 500 ALA A 120 -13.70 REMARK 500 REMARK 500 REMARK: NULL DBREF 1QGC 1 1 211 UNP Q9QCE2 Q9QCE2_9PICO 724 930 DBREF 1QGC 2 1 218 UNP Q9QCE2 Q9QCE2_9PICO 287 504 DBREF 1QGC 3 1 220 UNP P15072 POLG_FMDVT 505 723 DBREF 1QGC 5 133 156 PDB 1QGC 1QGC 133 156 DBREF 1QGC 4 1 218 PDB 1QGC 1QGC 1 218 DBREF 1QGC A 1 220 PDB 1QGC 1QGC 1 220 SEQADV 1QGC ALA 2 50 UNP Q9QCE2 GLY 336 CONFLICT SEQADV 1QGC THR 3 168 UNP P15072 ALA 671 CONFLICT SEQRES 1 1 207 THR THR THR THR GLY GLU SER ALA ASP PRO VAL THR THR SEQRES 2 1 207 THR VAL GLU ASN TYR GLY GLY GLU THR GLN VAL GLN ARG SEQRES 3 1 207 ARG HIS HIS THR ASP VAL ALA PHE VAL LEU ASP ARG PHE SEQRES 4 1 207 VAL LYS VAL THR VAL SER ASP ASN GLN HIS THR LEU ASP SEQRES 5 1 207 VAL MET GLN ALA HIS LYS ASP ASN ILE VAL GLY ALA LEU SEQRES 6 1 207 LEU ARG ALA ALA THR TYR TYR PHE SER ASP LEU GLU ILE SEQRES 7 1 207 ALA VAL THR HIS THR GLY LYS LEU THR TRP VAL PRO ASN SEQRES 8 1 207 GLY ALA PRO VAL SER ALA LEU ASN ASN THR THR ASN PRO SEQRES 9 1 207 THR ALA TYR HIS LYS GLY PRO VAL THR ARG LEU ALA LEU SEQRES 10 1 207 PRO TYR THR ALA PRO HIS ARG VAL LEU ALA THR ALA TYR SEQRES 11 1 207 THR GLY THR THR THR TYR THR ALA SER ALA ARG GLY ASP SEQRES 12 1 207 LEU ALA HIS LEU THR THR THR HIS ALA ARG HIS LEU PRO SEQRES 13 1 207 THR SER PHE ASN PHE GLY ALA VAL LYS ALA GLU THR ILE SEQRES 14 1 207 THR GLU LEU LEU VAL ARG MET LYS ARG ALA GLU LEU TYR SEQRES 15 1 207 CYS PRO ARG PRO ILE LEU PRO ILE GLN PRO THR GLY ASP SEQRES 16 1 207 ARG HIS LYS GLN PRO LEU VAL ALA PRO ALA LYS GLN SEQRES 1 2 218 ASP LYS LYS THR GLU GLU THR THR LEU LEU GLU ASP ARG SEQRES 2 2 218 ILE LEU THR THR ARG ASN GLY HIS THR THR SER THR THR SEQRES 3 2 218 GLN SER SER VAL GLY VAL THR PHE GLY TYR ALA THR ALA SEQRES 4 2 218 GLU ASP SER THR SER GLY PRO ASN THR SER ALA LEU GLU SEQRES 5 2 218 THR ARG VAL HIS GLN ALA GLU ARG PHE PHE LYS MET ALA SEQRES 6 2 218 LEU PHE ASP TRP VAL PRO SER GLN ASN PHE GLY HIS MET SEQRES 7 2 218 HIS LYS VAL VAL LEU PRO HIS GLU PRO LYS GLY VAL TYR SEQRES 8 2 218 GLY GLY LEU VAL LYS SER TYR ALA TYR MET ARG ASN GLY SEQRES 9 2 218 TRP ASP VAL GLU VAL THR ALA VAL GLY ASN GLN PHE ASN SEQRES 10 2 218 GLY GLY CYS LEU LEU VAL ALA LEU VAL PRO GLU MET GLY SEQRES 11 2 218 ASP ILE SER ASP ARG GLU LYS TYR GLN LEU THR LEU TYR SEQRES 12 2 218 PRO HIS GLN PHE ILE ASN PRO ARG THR ASN MET THR ALA SEQRES 13 2 218 HIS ILE THR VAL PRO TYR VAL GLY VAL ASN ARG TYR ASP SEQRES 14 2 218 GLN TYR LYS GLN HIS ARG PRO TRP THR LEU VAL VAL MET SEQRES 15 2 218 VAL VAL ALA PRO LEU THR THR ASN THR ALA GLY ALA GLN SEQRES 16 2 218 GLN ILE LYS VAL TYR ALA ASN ILE ALA PRO THR ASN VAL SEQRES 17 2 218 HIS VAL ALA GLY GLU LEU PRO SER LYS GLU SEQRES 1 3 219 GLY ILE PHE PRO VAL ALA CYS SER ASP GLY TYR GLY ASN SEQRES 2 3 219 MET VAL THR THR ASP PRO LYS THR ALA ASP PRO ALA TYR SEQRES 3 3 219 GLY LYS VAL TYR ASN PRO PRO ARG THR ALA LEU PRO GLY SEQRES 4 3 219 ARG PHE THR ASN TYR LEU ASP VAL ALA GLU ALA CYS PRO SEQRES 5 3 219 THR PHE LEU MET PHE GLU ASN VAL PRO TYR VAL SER THR SEQRES 6 3 219 ARG THR ASP GLY GLN ARG LEU LEU ALA LYS PHE ASP VAL SEQRES 7 3 219 SER LEU ALA ALA LYS HIS MET SER ASN THR TYR LEU ALA SEQRES 8 3 219 GLY LEU ALA GLN TYR TYR THR GLN TYR THR GLY THR ILE SEQRES 9 3 219 ASN LEU HIS PHE MET PHE THR GLY PRO THR ASP ALA LYS SEQRES 10 3 219 ALA ARG TYR MET VAL ALA TYR VAL PRO PRO GLY MET ASP SEQRES 11 3 219 ALA PRO ASP ASN PRO GLU GLU ALA ALA HIS CYS ILE HIS SEQRES 12 3 219 ALA GLU TRP ASP THR GLY LEU ASN SER LYS PHE THR PHE SEQRES 13 3 219 SER ILE PRO TYR ILE SER ALA ALA ASP TYR THR TYR THR SEQRES 14 3 219 ALA SER HIS GLU ALA GLU THR THR CYS VAL GLN GLY TRP SEQRES 15 3 219 VAL CYS VAL TYR GLN ILE THR HIS GLY LYS ALA ASP ALA SEQRES 16 3 219 ASP ALA LEU VAL VAL SER ALA SER ALA GLY LYS ASP PHE SEQRES 17 3 219 GLU LEU ARG LEU PRO VAL ASP ALA ARG GLN GLN SEQRES 1 4 218 ASP ILE VAL LEU THR GLN SER PRO ALA SER LEU ALA VAL SEQRES 2 4 218 SER LEU GLY GLN ARG ALA THR ILE SER CYS ARG ALA SER SEQRES 3 4 218 GLU SER VAL ASP SER SER GLY HIS SER PHE MET HIS TRP SEQRES 4 4 218 TYR GLN GLN LYS PRO GLY GLN PRO PRO LYS LEU LEU ILE SEQRES 5 4 218 TYR ARG ALA SER ASN LEU GLU SER GLY ILE PRO ASP ARG SEQRES 6 4 218 PHE SER GLY SER GLY SER ARG THR ASP PHE THR LEU THR SEQRES 7 4 218 ILE ASP PRO VAL GLU ALA ASP ASP VAL ALA THR TYR TYR SEQRES 8 4 218 CYS GLN GLN SER ASN GLU VAL PRO LEU THR PHE GLY ALA SEQRES 9 4 218 GLY THR LYS LEU ASP LEU LYS ARG ALA ASP ALA ALA PRO SEQRES 10 4 218 THR VAL SER ILE PHE PRO PRO SER SER GLU GLN LEU THR SEQRES 11 4 218 SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN ASN PHE SEQRES 12 4 218 TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SEQRES 13 4 218 SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP THR ASP SEQRES 14 4 218 GLN ASP SER LYS ASP SER THR TYR SER MET SER SER THR SEQRES 15 4 218 LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS ASN SER SEQRES 16 4 218 TYR THR CYS GLU ALA THR HIS LYS THR SER THR SER PRO SEQRES 17 4 218 ILE VAL LYS SER PHE ASN ARG ASN GLU OCS SEQRES 1 A 220 GLU VAL MET LEU VAL GLU SER GLY GLY GLY LEU VAL LYS SEQRES 2 A 220 PRO GLY GLY SER LEU LYS LEU SER CYS THR ALA SER GLY SEQRES 3 A 220 PHE ILE PHE ASN ARG CYS ALA MET SER TRP VAL ARG GLN SEQRES 4 A 220 THR PRO GLU LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 A 220 SER GLY GLY THR TYR THR TYR TYR PRO ASP SER VAL LYS SEQRES 6 A 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 A 220 LEU TYR LEU GLN MET SER SER LEU ARG SER ALA ASP THR SEQRES 8 A 220 ALA MET TYR TYR CYS VAL ARG ARG GLU ASP GLY GLY ASP SEQRES 9 A 220 GLU GLY PHE ALA TYR TRP GLY GLN GLY THR VAL VAL THR SEQRES 10 A 220 VAL SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO SEQRES 11 A 220 LEU ALA PRO GLY SER ALA ALA ALA ALA ALA SER MET VAL SEQRES 12 A 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 A 220 VAL THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 A 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 A 220 THR LEU SER SER SER VAL THR VAL PRO SER SER THR TRP SEQRES 16 A 220 PRO SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 A 220 SER SER THR LYS VAL ASP LYS LYS ILE VAL PRO ARG SEQRES 1 5 24 THR THR ALA TYR THR ALA SER ALA ARG GLY ASP LEU ALA SEQRES 2 5 24 HIS LEU THR THR THR ALA ALA ARG THR LEU PRO MODRES 1QGC OCS 4 218 CYS CYSTEINESULFONIC ACID HET OCS 4 218 7 HETNAM OCS CYSTEINESULFONIC ACID FORMUL 4 OCS C3 H7 N O5 S HELIX 1 1 THR 1 4 ALA 1 8 5 5 HELIX 2 2 THR 1 14 GLY 1 19 5 6 HELIX 3 3 ARG 1 26 THR 1 30 5 5 HELIX 4 4 ASP 1 31 LEU 1 36 1 6 HELIX 5 5 ASP 1 52 ALA 1 56 5 5 HELIX 6 6 ASN 1 60 ARG 1 67 1 8 HELIX 7 7 PRO 1 94 ASN 1 100 5 7 HELIX 8 8 GLY 2 45 SER 2 49 5 5 HELIX 9 9 LYS 2 88 SER 2 97 1 10 HELIX 10 10 ASP 2 134 TYR 2 138 5 5 HELIX 11 11 GLN 2 170 HIS 2 174 5 5 HELIX 12 12 ASN 3 43 CYS 3 51 1 9 HELIX 13 13 THR 3 89 GLN 3 96 1 8 HELIX 14 14 ASN 3 135 ALA 3 140 1 6 HELIX 15 15 GLU 4 83 VAL 4 87 5 5 HELIX 16 16 SER 4 125 SER 4 131 1 7 HELIX 17 17 LYS 4 187 ARG 4 192 1 6 HELIX 18 18 ASN 4 216 OCS 4 218 5 3 HELIX 19 19 ILE A 28 CYS A 32 5 5 HELIX 20 20 PRO A 61 LYS A 65 5 5 HELIX 21 21 ARG A 87 THR A 91 5 5 HELIX 22 22 GLY A 134 ALA A 138 5 5 HELIX 23 23 SER A 163 SER A 165 5 3 HELIX 24 24 THR A 194 GLU A 198 1 5 HELIX 25 25 PRO A 207 SER A 210 5 4 HELIX 26 26 LEU 5 144 THR 5 148 5 5 SHEET 1 A 4 PHE 1 39 VAL 1 42 0 SHEET 2 A 4 ALA 1 167 PRO 1 188 -1 O LEU 1 176 N VAL 1 42 SHEET 3 A 4 ALA 1 69 VAL 1 89 -1 N ASP 1 75 O LYS 1 181 SHEET 4 A 4 THR 1 105 ALA 1 106 -1 O ALA 1 106 N LEU 1 86 SHEET 1 B 3 THR 1 105 ALA 1 106 0 SHEET 2 B 3 ALA 1 69 VAL 1 89 -1 N LEU 1 86 O ALA 1 106 SHEET 3 B 3 VAL 1 112 LEU 1 117 -1 O LEU 1 117 N LEU 1 76 SHEET 1 C 3 VAL 1 112 LEU 1 117 0 SHEET 2 C 3 ALA 1 69 VAL 1 89 -1 N LEU 1 76 O LEU 1 117 SHEET 3 C 3 LEU 1 126 ALA 1 127 -1 O LEU 1 126 N TYR 1 72 SHEET 1 D 4 LEU 1 126 ALA 1 127 0 SHEET 2 D 4 ALA 1 69 VAL 1 89 -1 N TYR 1 72 O LEU 1 126 SHEET 3 D 4 ALA 1 167 PRO 1 188 -1 O LYS 1 181 N ASP 1 75 SHEET 4 D 4 GLN 1 48 THR 1 50 -1 N HIS 1 49 O VAL 1 168 SHEET 1 E 3 GLN 1 48 THR 1 50 0 SHEET 2 E 3 ALA 1 167 PRO 1 188 -1 O VAL 1 168 N HIS 1 49 SHEET 3 E 3 PHE 1 39 VAL 1 42 -1 N VAL 1 42 O LEU 1 176 SHEET 1 F 2 THR 2 16 ASN 2 19 0 SHEET 2 F 2 THR 2 22 THR 2 25 -1 O THR 2 22 N ASN 2 19 SHEET 1 G 5 THR 2 33 PHE 2 34 0 SHEET 2 G 5 THR 2 155 VAL 2 160 1 O THR 2 159 N THR 2 33 SHEET 3 G 5 TYR 2 98 VAL 2 112 -1 N VAL 2 107 O ILE 2 158 SHEET 4 G 5 ILE 2 197 GLU 2 213 -1 O THR 2 206 N GLY 2 104 SHEET 5 G 5 THR 2 53 ARG 2 54 -1 N THR 2 53 O VAL 2 210 SHEET 1 H 5 THR 2 33 PHE 2 34 0 SHEET 2 H 5 THR 2 155 VAL 2 160 1 O THR 2 159 N THR 2 33 SHEET 3 H 5 TYR 2 98 VAL 2 112 -1 N VAL 2 107 O ILE 2 158 SHEET 4 H 5 ILE 2 197 GLU 2 213 -1 O THR 2 206 N GLY 2 104 SHEET 5 H 5 PHE 2 62 TRP 2 69 -1 N TRP 2 69 O ILE 2 197 SHEET 1 I 4 MET 2 78 VAL 2 82 0 SHEET 2 I 4 TRP 2 177 THR 2 188 -1 O VAL 2 181 N HIS 2 79 SHEET 3 I 4 GLY 2 118 PRO 2 127 -1 N CYS 2 120 O VAL 2 184 SHEET 4 I 4 HIS 2 145 ILE 2 148 -1 O GLN 2 146 N VAL 2 123 SHEET 1 J 4 THR 3 53 PHE 3 54 0 SHEET 2 J 4 LEU 3 199 ALA 3 205 -1 O ALA 3 203 N THR 3 53 SHEET 3 J 4 ILE 3 105 PHE 3 111 -1 N HIS 3 108 O SER 3 202 SHEET 4 J 4 THR 3 156 ILE 3 159 -1 O ILE 3 159 N ILE 3 105 SHEET 1 K 4 LEU 3 73 ASP 3 78 0 SHEET 2 K 4 TRP 3 183 GLY 3 192 -1 O VAL 3 186 N ALA 3 75 SHEET 3 K 4 LYS 3 118 VAL 3 126 -1 N ARG 3 120 O ILE 3 189 SHEET 4 K 4 ILE 3 143 ASP 3 148 -1 O TRP 3 147 N TYR 3 121 SHEET 1 L 3 THR 3 168 TYR 3 169 0 SHEET 2 L 3 TYR 3 98 THR 3 102 -1 N TYR 3 101 O THR 3 168 SHEET 3 L 3 GLU 3 210 PRO 3 214 -1 O GLU 3 210 N THR 3 102 SHEET 1 M 4 LEU 4 4 SER 4 7 0 SHEET 2 M 4 ALA 4 19 ALA 4 25 -1 O ARG 4 24 N THR 4 5 SHEET 3 M 4 ASP 4 74 ILE 4 79 -1 O LEU 4 77 N ILE 4 21 SHEET 4 M 4 PHE 4 66 SER 4 71 -1 N SER 4 67 O THR 4 78 SHEET 1 N 5 SER 4 10 VAL 4 13 0 SHEET 2 N 5 THR 4 106 LEU 4 110 1 O ASP 4 109 N LEU 4 11 SHEET 3 N 5 ALA 4 88 GLN 4 94 -1 N ALA 4 88 O LEU 4 108 SHEET 4 N 5 MET 4 37 GLN 4 42 -1 N GLN 4 42 O THR 4 89 SHEET 5 N 5 LYS 4 49 ILE 4 52 -1 O LYS 4 49 N GLN 4 41 SHEET 1 O 2 ASP 4 30 SER 4 31 0 SHEET 2 O 2 HIS 4 34 SER 4 35 -1 O HIS 4 34 N SER 4 31 SHEET 1 P 4 THR 4 118 PHE 4 122 0 SHEET 2 P 4 GLY 4 133 PHE 4 143 -1 O ASN 4 141 N THR 4 118 SHEET 3 P 4 TYR 4 177 THR 4 186 -1 O SER 4 181 N CYS 4 138 SHEET 4 P 4 VAL 4 163 THR 4 168 -1 N SER 4 166 O SER 4 180 SHEET 1 Q 4 SER 4 157 ARG 4 159 0 SHEET 2 Q 4 ILE 4 148 ILE 4 154 -1 N ILE 4 154 O SER 4 157 SHEET 3 Q 4 SER 4 195 HIS 4 202 -1 O THR 4 201 N ASN 4 149 SHEET 4 Q 4 ILE 4 209 ASN 4 214 -1 O ILE 4 209 N ALA 4 200 SHEET 1 R 4 MET A 3 SER A 7 0 SHEET 2 R 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 R 4 THR A 78 MET A 83 -1 O LEU A 81 N LEU A 20 SHEET 4 R 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 S 6 GLY A 10 VAL A 12 0 SHEET 2 S 6 THR A 114 VAL A 118 1 O THR A 117 N VAL A 12 SHEET 3 S 6 MET A 93 ARG A 98 -1 N TYR A 94 O THR A 114 SHEET 4 S 6 MET A 34 THR A 40 -1 N GLN A 39 O MET A 93 SHEET 5 S 6 ARG A 44 ILE A 51 -1 O ARG A 44 N THR A 40 SHEET 6 S 6 THR A 58 TYR A 59 -1 O TYR A 59 N THR A 50 SHEET 1 T 4 SER A 127 LEU A 131 0 SHEET 2 T 4 MET A 142 LYS A 150 -1 O LEU A 148 N TYR A 129 SHEET 3 T 4 LEU A 181 SER A 193 -1 O VAL A 190 N VAL A 143 SHEET 4 T 4 VAL A 170 THR A 172 -1 N HIS A 171 O SER A 187 SHEET 1 U 4 SER A 127 LEU A 131 0 SHEET 2 U 4 MET A 142 LYS A 150 -1 O LEU A 148 N TYR A 129 SHEET 3 U 4 LEU A 181 SER A 193 -1 O VAL A 190 N VAL A 143 SHEET 4 U 4 VAL A 176 GLN A 178 -1 N VAL A 176 O THR A 183 SHEET 1 V 3 THR A 158 TRP A 161 0 SHEET 2 V 3 THR A 201 HIS A 206 -1 O ASN A 203 N THR A 160 SHEET 3 V 3 THR A 211 LYS A 216 -1 O LYS A 215 N CYS A 202 SSBOND 1 CYS 4 23 CYS 4 92 1555 1555 2.01 SSBOND 2 CYS 4 138 CYS 4 198 1555 1555 2.01 SSBOND 3 CYS A 22 CYS A 96 1555 1555 2.01 SSBOND 4 CYS A 147 CYS A 202 1555 1555 2.06 LINK C GLU 4 217 N OCS 4 218 1555 1555 1.32 CISPEP 1 GLY 1 110 PRO 1 111 0 -0.30 CISPEP 2 LEU 2 83 PRO 2 84 0 0.81 CISPEP 3 SER 4 7 PRO 4 8 0 -26.31 CISPEP 4 TYR 4 144 PRO 4 145 0 2.94 CISPEP 5 PHE A 153 PRO A 154 0 -20.06 CISPEP 6 TRP A 195 PRO A 196 0 -5.10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000