HEADER TRANSFERASE 04-MAY-99 1QGS TITLE UDP-MAGNESIUM COMPLEX OF SPSA FROM BACILLUS SUBTILIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (SPORE COAT POLYSACCHARIDE BIOSYNTHESIS PROTEIN COMPND 3 SPSA); COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: WHOLE MOLECULE; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: GLYCEROL MAGNESIUM UDP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 GENE: SPSA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL 21 KEYWDS GLYCOSYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.J.CHARNOCK REVDAT 6 16-OCT-24 1QGS 1 REMARK REVDAT 5 16-AUG-23 1QGS 1 REMARK LINK REVDAT 4 13-JUL-11 1QGS 1 VERSN REVDAT 3 24-FEB-09 1QGS 1 VERSN REVDAT 2 01-APR-03 1QGS 1 JRNL REVDAT 1 04-MAY-00 1QGS 0 JRNL AUTH S.J.CHARNOCK,G.J.DAVIES JRNL TITL STRUCTURE OF THE NUCLEOTIDE-DIPHOSPHO-SUGAR TRANSFERASE, JRNL TITL 2 SPSA FROM BACILLUS SUBTILIS, IN NATIVE AND JRNL TITL 3 NUCLEOTIDE-COMPLEXED FORMS. JRNL REF BIOCHEMISTRY V. 38 6380 1999 JRNL REFN ISSN 0006-2960 JRNL PMID 10350455 JRNL DOI 10.1021/BI990270Y REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 3 NUMBER OF REFLECTIONS : 18262 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 916 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1968 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 191 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.011 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.032 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.032 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.010 ; 0.040 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.125 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.184 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.250 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 4.000 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 14.600; 15.000 REMARK 3 TRANSVERSE (DEGREES) : 26.700; 20.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.650 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.500 ; 6.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.900 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.100 ; 6.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QGS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000000997. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX7.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.488 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18368 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.0 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : 0.32000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1QG8 REMARK 200 REMARK 200 REMARK: ISOMORPHOUS WITH NATIVE REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.71950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.71950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 23.71000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 70.99850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 23.71000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 70.99850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.71950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 23.71000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 70.99850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 40.71950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 23.71000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 70.99850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 134 REMARK 465 ASN A 135 REMARK 465 ARG A 136 REMARK 465 ASP A 218 REMARK 465 GLN A 219 REMARK 465 SER A 220 REMARK 465 ILE A 221 REMARK 465 HIS A 222 REMARK 465 PHE A 223 REMARK 465 GLN A 224 REMARK 465 LEU A 225 REMARK 465 PHE A 226 REMARK 465 GLU A 227 REMARK 465 LEU A 228 REMARK 465 GLU A 229 REMARK 465 LYS A 230 REMARK 465 ASN A 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 128 OH TYR A 130 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 356 O HOH A 401 3655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TYR A 11 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 ASP A 31 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG A 59 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG A 71 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 TYR A 102 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 TYR A 102 CB - CG - CD1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 106 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 144 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 208 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 LEU A 213 CA - CB - CG ANGL. DEV. = 22.0 DEGREES REMARK 500 SER A 249 N - CA - CB ANGL. DEV. = 12.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 13 60.94 -119.53 REMARK 500 ASP A 39 47.66 -96.46 REMARK 500 TYR A 179 -79.16 -87.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 99 OD2 REMARK 620 2 UDP A 311 O3B 149.2 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GOL A 310 O2 REMARK 620 2 UDP A 311 O1B 156.8 REMARK 620 3 HOH A 312 O 94.6 96.1 REMARK 620 4 HOH A 313 O 85.9 76.4 77.4 REMARK 620 5 HOH A 314 O 92.5 106.2 98.5 175.4 REMARK 620 6 HOH A 321 O 85.6 81.4 173.2 95.9 88.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UDP A 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 310 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QG8 RELATED DB: PDB REMARK 900 NATIVE SPSA FROM BACILLUS SUBTILIS (GLYCEROL MAGNESIUM) REMARK 900 RELATED ID: 1QGQ RELATED DB: PDB REMARK 900 UDP-MANGANESE COMPLEX OF SPSA FROM BACILLUS SUBTILIS (GLYCEROL REMARK 900 MAGNESIUM MANGANESE UDP) DBREF 1QGS A 2 256 UNP P39621 SPSA_BACSU 2 256 SEQRES 1 A 255 PRO LYS VAL SER VAL ILE MET THR SER TYR ASN LYS SER SEQRES 2 A 255 ASP TYR VAL ALA LYS SER ILE SER SER ILE LEU SER GLN SEQRES 3 A 255 THR PHE SER ASP PHE GLU LEU PHE ILE MET ASP ASP ASN SEQRES 4 A 255 SER ASN GLU GLU THR LEU ASN VAL ILE ARG PRO PHE LEU SEQRES 5 A 255 ASN ASP ASN ARG VAL ARG PHE TYR GLN SER ASP ILE SER SEQRES 6 A 255 GLY VAL LYS GLU ARG THR GLU LYS THR ARG TYR ALA ALA SEQRES 7 A 255 LEU ILE ASN GLN ALA ILE GLU MET ALA GLU GLY GLU TYR SEQRES 8 A 255 ILE THR TYR ALA THR ASP ASP ASN ILE TYR MET PRO ASP SEQRES 9 A 255 ARG LEU LEU LYS MET VAL ARG GLU LEU ASP THR HIS PRO SEQRES 10 A 255 GLU LYS ALA VAL ILE TYR SER ALA SER LYS THR TYR HIS SEQRES 11 A 255 LEU ASN GLU ASN ARG ASP ILE VAL LYS GLU THR VAL ARG SEQRES 12 A 255 PRO ALA ALA GLN VAL THR TRP ASN ALA PRO CYS ALA ILE SEQRES 13 A 255 ASP HIS CYS SER VAL MET HIS ARG TYR SER VAL LEU GLU SEQRES 14 A 255 LYS VAL LYS GLU LYS PHE GLY SER TYR TRP ASP GLU SER SEQRES 15 A 255 PRO ALA PHE TYR ARG ILE GLY ASP ALA ARG PHE PHE TRP SEQRES 16 A 255 ARG VAL ASN HIS PHE TYR PRO PHE TYR PRO LEU ASP GLU SEQRES 17 A 255 GLU LEU ASP LEU ASN TYR ILE THR ASP GLN SER ILE HIS SEQRES 18 A 255 PHE GLN LEU PHE GLU LEU GLU LYS ASN GLU PHE VAL ARG SEQRES 19 A 255 ASN LEU PRO PRO GLN ARG ASN CYS ARG GLU LEU ARG GLU SEQRES 20 A 255 SER LEU LYS LYS LEU GLY MET GLY HET MG A 301 1 HET MG A 302 1 HET UDP A 311 25 HET GOL A 310 6 HETNAM MG MAGNESIUM ION HETNAM UDP URIDINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG 2(MG 2+) FORMUL 4 UDP C9 H14 N2 O12 P2 FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *191(H2 O) HELIX 1 1 VAL A 17 LEU A 25 1 9 HELIX 2 2 GLU A 43 ASN A 54 1 12 HELIX 3 3 VAL A 68 GLU A 73 1 6 HELIX 4 4 ARG A 76 MET A 87 1 12 HELIX 5 5 ARG A 106 THR A 116 1 11 HELIX 6 6 HIS A 159 SER A 161 5 3 HELIX 7 7 TYR A 166 PHE A 176 1 11 HELIX 8 8 PRO A 184 PHE A 186 5 3 HELIX 9 9 GLY A 190 HIS A 200 1 11 HELIX 10 10 PHE A 233 ASN A 236 1 4 HELIX 11 11 CYS A 243 LEU A 253 1 11 SHEET 1 A 7 TYR A 205 GLU A 210 0 SHEET 2 A 7 VAL A 122 ALA A 126 1 N TYR A 124 O TYR A 205 SHEET 3 A 7 VAL A 162 ARG A 165 -1 N MET A 163 O ILE A 123 SHEET 4 A 7 TYR A 92 THR A 97 -1 N ILE A 93 O HIS A 164 SHEET 5 A 7 VAL A 4 SER A 10 1 N SER A 5 O TYR A 92 SHEET 6 A 7 PHE A 32 ASP A 38 1 N GLU A 33 O VAL A 4 SHEET 7 A 7 VAL A 58 GLN A 62 1 N ARG A 59 O LEU A 34 SHEET 1 B 4 ASN A 100 TYR A 102 0 SHEET 2 B 4 ASP A 212 ILE A 216 -1 N LEU A 213 O ILE A 101 SHEET 3 B 4 SER A 127 HIS A 131 1 N LYS A 128 O ASP A 212 SHEET 4 B 4 LYS A 140 ARG A 144 -1 N ARG A 144 O SER A 127 SSBOND 1 CYS A 155 CYS A 243 1555 1555 2.05 LINK OD2 ASP A 99 MG MG A 302 1555 1555 2.60 LINK MG MG A 301 O2 GOL A 310 1555 1555 2.13 LINK MG MG A 301 O1B UDP A 311 1555 1555 2.64 LINK MG MG A 301 O HOH A 312 1555 1555 2.03 LINK MG MG A 301 O HOH A 313 1555 1555 1.89 LINK MG MG A 301 O HOH A 314 1555 1555 1.97 LINK MG MG A 301 O HOH A 321 1555 1555 2.33 LINK MG MG A 302 O3B UDP A 311 1555 1555 2.34 SITE 1 AC1 6 GOL A 310 UDP A 311 HOH A 312 HOH A 313 SITE 2 AC1 6 HOH A 314 HOH A 321 SITE 1 AC2 2 ASP A 99 UDP A 311 SITE 1 AC3 17 THR A 9 SER A 10 TYR A 11 LYS A 13 SITE 2 AC3 17 ASP A 39 ARG A 71 ARG A 76 TYR A 77 SITE 3 AC3 17 LEU A 80 THR A 97 ASP A 98 MG A 301 SITE 4 AC3 17 MG A 302 HOH A 313 HOH A 409 HOH A 415 SITE 5 AC3 17 HOH A 499 SITE 1 AC4 9 ASP A 158 ASP A 191 ALA A 192 MG A 301 SITE 2 AC4 9 HOH A 312 HOH A 313 HOH A 314 HOH A 319 SITE 3 AC4 9 HOH A 321 CRYST1 47.420 141.997 81.439 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021088 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007042 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012279 0.00000