HEADER PHOTOSYNTHESIS 10-MAY-99 1QGW TITLE CRYSTAL STRUCTURE OF PHYCOERYTHRIN 545 FROM THE MARINE CRYPTOPHYTE TITLE 2 RHODOMONAS CS24 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (ALPHA-1 CHAIN)); COMPND 3 CHAIN: A; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (ALPHA-2 CHAIN)); COMPND 6 CHAIN: B; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: PROTEIN (CRYPTOPHYTAN PHYCOERYTHRIN (BETA CHAIN)); COMPND 9 CHAIN: C, D SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOMONAS SP. CS24; SOURCE 3 ORGANISM_TAXID: 79257; SOURCE 4 STRAIN: CS 24; SOURCE 5 CELLULAR_LOCATION: THYLAKOID LUMEN; SOURCE 6 OTHER_DETAILS: CSIRO DIVISION OF FISHERIES HOBART TASMAINIA SOURCE 7 AUSTRALIA; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: RHODOMONAS SP. CS24; SOURCE 10 ORGANISM_TAXID: 79257; SOURCE 11 STRAIN: CS 24; SOURCE 12 CELLULAR_LOCATION: THYLAKOID LUMEN; SOURCE 13 OTHER_DETAILS: CSIRO DIVISION OF FISHERIES HOBART TASMAINIA SOURCE 14 AUSTRALIA; SOURCE 15 MOL_ID: 3; SOURCE 16 ORGANISM_SCIENTIFIC: RHODOMONAS SP. CS24; SOURCE 17 ORGANISM_TAXID: 79257; SOURCE 18 STRAIN: CS 24; SOURCE 19 CELLULAR_LOCATION: THYLAKOID LUMEN; SOURCE 20 OTHER_DETAILS: CSIRO DIVISION OF FISHERIES HOBART TASMAINIA SOURCE 21 AUSTRALIA KEYWDS PHYCOERYTHRIN, LIGHT-HARVESTING PROTEIN, CRYPTOPHYTE, PHYCOBILIN, KEYWDS 2 PHOTOSYNTHESIS EXPDTA X-RAY DIFFRACTION AUTHOR S.J.HARROP,K.E.WILK,R.G.HILLER,P.M.G.CURMI REVDAT 7 20-SEP-23 1QGW 1 REMARK REVDAT 6 21-DEC-22 1QGW 1 REMARK SEQADV LINK REVDAT 5 07-MAR-18 1QGW 1 REMARK REVDAT 4 24-FEB-09 1QGW 1 VERSN REVDAT 3 01-APR-03 1QGW 1 JRNL REVDAT 2 31-AUG-99 1QGW 1 JRNL DBREF REVDAT 1 19-MAY-99 1QGW 0 JRNL AUTH K.E.WILK,S.J.HARROP,L.JANKOVA,D.EDLER,G.KEENAN,F.SHARPLES, JRNL AUTH 2 R.G.HILLER,P.M.CURMI JRNL TITL EVOLUTION OF A LIGHT-HARVESTING PROTEIN BY ADDITION OF NEW JRNL TITL 2 SUBUNITS AND REARRANGEMENT OF CONSERVED ELEMENTS: CRYSTAL JRNL TITL 3 STRUCTURE OF A CRYPTOPHYTE PHYCOERYTHRIN AT 1.63-A JRNL TITL 4 RESOLUTION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 96 8901 1999 JRNL REFN ISSN 0027-8424 JRNL PMID 10430868 JRNL DOI 10.1073/PNAS.96.16.8901 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.J.WEDEMAYER,D.G.KIDD,D.E.WEMMER,A.N.GLAZER REMARK 1 TITL PHYCOBILINS OF CRYPTOPHYCEAN ALGAE. OCCURANCE OF REMARK 1 TITL 2 DIHYDROBILIVERDIN AND MESOBILIVERDIN IN CRYPTOMONAD REMARK 1 TITL 3 BILIPROTEINS. REMARK 1 REF J.BIOL.CHEM. V. 267 7315 1992 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 1.63 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.63 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.4 REMARK 3 NUMBER OF REFLECTIONS : 56582 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.149 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1697 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3578 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 347 REMARK 3 SOLVENT ATOMS : 845 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 8.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.506 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.007 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.019 ; 0.040 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.027 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.820 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.180 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.220 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.810 ; 3.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QGW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001026. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR591 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MACSCIENCE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 264395 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.630 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 21.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.63 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.10400 REMARK 200 R SYM FOR SHELL (I) : 0.10400 REMARK 200 FOR SHELL : 12.00 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: BETA CHAIN FROM PDB ENTRY 1LIA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.86 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.51500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.77500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.31500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.77500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.51500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.31500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18250 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -205.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET C 1 REMARK 465 LEU C 2 REMARK 465 THR C 10 REMARK 465 ASN C 11 REMARK 465 ALA C 12 REMARK 465 ASP C 13 REMARK 465 SER C 14 REMARK 465 LYS C 15 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 7 CE NZ REMARK 480 LYS A 75 CG CD CE NZ REMARK 480 LYS B 34 CG CD CE NZ REMARK 480 ARG C 7 CG CD NE CZ NH1 NH2 REMARK 480 LYS C 29 CD CE NZ REMARK 480 PHE C 30 CG CD1 CD2 CE1 CE2 CZ REMARK 480 ARG C 108 NE CZ NH1 NH2 REMARK 480 GLU C 115 CD OE1 OE2 REMARK 480 LYS C 149 CE NZ REMARK 480 GLN C 155 CG CD OE1 NE2 REMARK 480 MET D 1 CG SD CE REMARK 480 ARG D 7 NE CZ NH1 NH2 REMARK 480 LYS D 15 CE NZ REMARK 480 ARG D 108 CD NE CZ NH1 NH2 REMARK 480 GLU D 115 CD OE1 OE2 REMARK 480 LYS D 149 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 974 O HOH D 1121 1.59 REMARK 500 O HOH C 904 O HOH D 948 1.75 REMARK 500 O HOH C 979 O HOH C 980 1.77 REMARK 500 O HOH C 968 O HOH C 969 1.86 REMARK 500 O HOH B 446 O HOH D 1083 1.86 REMARK 500 O HOH A 962 O HOH B 240 1.88 REMARK 500 CB VAL D 9 NH1 ARG D 108 1.88 REMARK 500 O HOH A 943 O HOH C 925 1.90 REMARK 500 O HOH A 925 O HOH A 926 1.90 REMARK 500 O HOH D 1048 O HOH D 1049 1.91 REMARK 500 O HOH A 946 O HOH C 943 1.91 REMARK 500 O HOH C 942 O HOH D 975 1.99 REMARK 500 OE2 GLU D 115 O HOH D 1198 2.03 REMARK 500 O HOH C 939 O HOH C 940 2.04 REMARK 500 O HOH B 717 O HOH B 718 2.08 REMARK 500 O HOH B 244 O HOH C 995 2.08 REMARK 500 OE2 GLU A 37 O HOH A 929 2.09 REMARK 500 O HOH D 1135 O HOH D 1136 2.11 REMARK 500 CD GLU D 115 O HOH D 1198 2.12 REMARK 500 O HOH D 1134 O HOH D 1135 2.13 REMARK 500 O HOH B 713 O HOH D 1166 2.13 REMARK 500 O HOH A 914 O HOH A 915 2.13 REMARK 500 O HOH A 1040 O HOH C 1082 2.13 REMARK 500 O HOH A 974 O HOH A 975 2.14 REMARK 500 OD1 ASN C 125 O HOH C 1115 2.14 REMARK 500 O HOH B 242 O HOH C 995 2.15 REMARK 500 O HOH D 1158 O HOH D 1159 2.16 REMARK 500 O HOH B 397 O HOH D 1065 2.17 REMARK 500 O HOH B 642 O HOH B 643 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 34 OD1 ASP C 157 4456 1.73 REMARK 500 O HOH A 1028 O HOH D 1103 3555 1.91 REMARK 500 O HOH C 1047 O HOH D 912 3555 2.03 REMARK 500 O HOH B 302 O HOH C 1097 1455 2.10 REMARK 500 NZ LYS B 34 CG ASP C 157 4456 2.10 REMARK 500 O HOH C 968 O HOH D 987 4556 2.17 REMARK 500 O HOH C 1093 O HOH D 1014 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 7 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG C 91 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG D 108 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS B 24 -24.54 -153.21 REMARK 500 THR B 66 -59.75 -131.91 REMARK 500 THR C 75 147.14 79.53 REMARK 500 THR D 75 152.51 81.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 901 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 902 O REMARK 620 2 HOH A 903 O 88.9 REMARK 620 3 HOH B 834 O 177.7 89.3 REMARK 620 4 HOH B 837 O 90.1 92.4 91.3 REMARK 620 5 HOH D 903 O 92.6 90.2 86.0 176.3 REMARK 620 6 HOH D 904 O 91.1 179.0 90.7 88.6 88.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG D 902 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH D 905 O REMARK 620 2 HOH D 906 O 177.5 REMARK 620 3 HOH D 907 O 88.4 89.2 REMARK 620 4 HOH D 908 O 92.9 89.5 177.1 REMARK 620 5 HOH D 909 O 90.5 89.9 89.9 87.5 REMARK 620 6 HOH D 910 O 91.3 88.4 91.3 91.3 177.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG D 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBV A 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DBV B 219 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB C 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB C 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB C 258 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB D 250 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB D 282 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEB D 258 DBREF 1QGW A 1 76 UNP Q00433 PHE3_RHOS2 53 128 DBREF 1QGW B 1 67 UNP Q00433 PHE3_RHOS2 53 93 DBREF 1QGW C 1 177 UNP P27198 PHEB_RHOS2 1 177 DBREF 1QGW D 1 177 UNP P27198 PHEB_RHOS2 1 177 SEQADV 1QGW LYZ A 4 UNP Q00433 LYS 56 MODIFIED RESIDUE SEQADV 1QGW GLN A 10 UNP Q00433 LEU 62 CONFLICT SEQADV 1QGW LYZ B 4 UNP Q00433 LYS 41 MODIFIED RESIDUE SEQADV 1QGW CYS C 50 UNP P27198 VAL 50 CONFLICT SEQADV 1QGW VAL C 56 UNP P27198 TYR 56 CONFLICT SEQADV 1QGW CYS C 61 UNP P27198 GLU 61 CONFLICT SEQADV 1QGW SER C 65 UNP P27198 HIS 65 CONFLICT SEQADV 1QGW MEN C 72 UNP P27198 ASN 72 MODIFIED RESIDUE SEQADV 1QGW CYS C 73 UNP P27198 GLU 73 CONFLICT SEQADV 1QGW CYS D 50 UNP P27198 VAL 50 CONFLICT SEQADV 1QGW VAL D 56 UNP P27198 TYR 56 CONFLICT SEQADV 1QGW CYS D 61 UNP P27198 GLU 61 CONFLICT SEQADV 1QGW SER D 65 UNP P27198 HIS 65 CONFLICT SEQADV 1QGW MEN D 72 UNP P27198 ASN 72 MODIFIED RESIDUE SEQADV 1QGW CYS D 73 UNP P27198 GLU 73 CONFLICT SEQRES 1 A 76 ALA MET ASP LYZ SER ALA LYS ALA PRO GLN ILE THR ILE SEQRES 2 A 76 PHE ASP HIS ARG GLY CYS SER ARG ALA PRO LYS GLU SER SEQRES 3 A 76 THR GLY GLY LYS ALA GLY GLY GLN ASP ASP GLU MET MET SEQRES 4 A 76 VAL LYS VAL ALA SER THR LYS VAL THR VAL SER GLU SER SEQRES 5 A 76 ASP ALA ALA LYS LYS LEU GLN GLU PHE ILE THR PHE GLU SEQRES 6 A 76 LYS GLY ILE ASP GLY PRO PHE THR SER LYS ASN SEQRES 1 B 67 ALA MET ASP LYZ SER ALA LYS ALA PRO VAL ILE THR ILE SEQRES 2 B 67 PHE ASP HIS ARG GLY CYS SER ARG ALA PRO LYS GLU TYR SEQRES 3 B 67 THR GLY ALA LYS ALA GLY GLY LYS ASP ASP GLU MET MET SEQRES 4 B 67 VAL LYS ALA GLN SER VAL LYS ILE GLU VAL SER THR GLY SEQRES 5 B 67 THR ALA GLU GLY VAL LEU ALA THR SER LEU ALA LYS MET SEQRES 6 B 67 THR LYS SEQRES 1 C 177 MET LEU ASP ALA PHE SER ARG VAL VAL THR ASN ALA ASP SEQRES 2 C 177 SER LYS ALA ALA TYR VAL GLY GLY ALA ASP LEU GLN ALA SEQRES 3 C 177 LEU LYS LYS PHE ILE SER GLU GLY ASN LYS ARG LEU ASP SEQRES 4 C 177 SER VAL ASN SER ILE VAL SER ASN ALA SER CYS ILE VAL SEQRES 5 C 177 SER ASP ALA VAL SER GLY MET ILE CYS GLU ASN PRO SER SEQRES 6 C 177 LEU ILE SER PRO SER GLY MEN CYS TYR THR ASN ARG ARG SEQRES 7 C 177 MET ALA ALA CYS LEU ARG ASP GLY GLU ILE ILE LEU ARG SEQRES 8 C 177 TYR VAL SER TYR ALA LEU LEU SER GLY ASP ALA SER VAL SEQRES 9 C 177 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 C 177 SER SER LEU GLY VAL PRO ALA ASN SER ASN ALA ARG ALA SEQRES 11 C 177 VAL SER ILE MET LYS ALA CYS ALA VAL ALA PHE VAL ASN SEQRES 12 C 177 ASN THR ALA SER GLN LYS LYS LEU SER THR PRO GLN GLY SEQRES 13 C 177 ASP CYS SER GLY LEU ALA SER GLU VAL GLY GLY TYR PHE SEQRES 14 C 177 ASP LYS VAL THR ALA ALA ILE SER SEQRES 1 D 177 MET LEU ASP ALA PHE SER ARG VAL VAL THR ASN ALA ASP SEQRES 2 D 177 SER LYS ALA ALA TYR VAL GLY GLY ALA ASP LEU GLN ALA SEQRES 3 D 177 LEU LYS LYS PHE ILE SER GLU GLY ASN LYS ARG LEU ASP SEQRES 4 D 177 SER VAL ASN SER ILE VAL SER ASN ALA SER CYS ILE VAL SEQRES 5 D 177 SER ASP ALA VAL SER GLY MET ILE CYS GLU ASN PRO SER SEQRES 6 D 177 LEU ILE SER PRO SER GLY MEN CYS TYR THR ASN ARG ARG SEQRES 7 D 177 MET ALA ALA CYS LEU ARG ASP GLY GLU ILE ILE LEU ARG SEQRES 8 D 177 TYR VAL SER TYR ALA LEU LEU SER GLY ASP ALA SER VAL SEQRES 9 D 177 LEU GLU ASP ARG CYS LEU ASN GLY LEU LYS GLU THR TYR SEQRES 10 D 177 SER SER LEU GLY VAL PRO ALA ASN SER ASN ALA ARG ALA SEQRES 11 D 177 VAL SER ILE MET LYS ALA CYS ALA VAL ALA PHE VAL ASN SEQRES 12 D 177 ASN THR ALA SER GLN LYS LYS LEU SER THR PRO GLN GLY SEQRES 13 D 177 ASP CYS SER GLY LEU ALA SER GLU VAL GLY GLY TYR PHE SEQRES 14 D 177 ASP LYS VAL THR ALA ALA ILE SER MODRES 1QGW LYZ A 4 LYS 5-HYDROXYLYSINE MODRES 1QGW LYZ B 4 LYS 5-HYDROXYLYSINE MODRES 1QGW MEN C 72 ASN N-METHYL ASPARAGINE MODRES 1QGW MEN D 72 ASN N-METHYL ASPARAGINE HET LYZ A 4 10 HET LYZ B 4 10 HET MEN C 72 9 HET MEN D 72 9 HET MG A 901 1 HET DBV A 219 43 HET DBV B 219 43 HET CL C 903 1 HET PEB C 250 43 HET PEB C 282 43 HET PEB C 258 43 HET MG D 902 1 HET PEB D 250 43 HET PEB D 282 43 HET PEB D 258 43 HETNAM LYZ 5-HYDROXYLYSINE HETNAM MEN N-METHYL ASPARAGINE HETNAM MG MAGNESIUM ION HETNAM DBV 15,16-DIHYDROBILIVERDIN HETNAM CL CHLORIDE ION HETNAM PEB PHYCOERYTHROBILIN FORMUL 1 LYZ 2(C6 H14 N2 O3) FORMUL 3 MEN 2(C5 H10 N2 O3) FORMUL 5 MG 2(MG 2+) FORMUL 6 DBV 2(C33 H36 N4 O6) FORMUL 8 CL CL 1- FORMUL 9 PEB 6(C33 H40 N4 O6) FORMUL 16 HOH *845(H2 O) HELIX 1 1 GLN A 34 GLU A 37 5 4 HELIX 2 2 GLU A 51 THR A 63 1 13 HELIX 3 3 LYS B 34 GLU B 37 5 4 HELIX 4 4 THR B 51 LYS B 64 1 14 HELIX 5 5 ALA C 4 VAL C 8 1 5 HELIX 6 6 GLY C 21 PHE C 30 1 10 HELIX 7 7 GLY C 34 GLU C 62 1 29 HELIX 8 8 PRO C 64 ILE C 67 5 4 HELIX 9 9 ASN C 76 SER C 99 1 24 HELIX 10 10 SER C 103 ARG C 108 1 6 HELIX 11 11 LEU C 113 LEU C 120 1 8 HELIX 12 12 ALA C 124 ASN C 143 1 20 HELIX 13 13 SER C 159 ALA C 175 1 17 HELIX 14 14 ASP D 3 VAL D 9 5 7 HELIX 15 15 GLY D 21 PHE D 30 1 10 HELIX 16 16 GLY D 34 GLU D 62 1 29 HELIX 17 17 PRO D 64 ILE D 67 5 4 HELIX 18 18 ASN D 76 SER D 99 1 24 HELIX 19 19 SER D 103 ARG D 108 1 6 HELIX 20 20 LEU D 113 LEU D 120 1 8 HELIX 21 21 ALA D 124 VAL D 142 1 19 HELIX 22 22 GLN D 148 LYS D 150 5 3 HELIX 23 23 SER D 159 ALA D 175 1 17 SHEET 1 A 2 LYS A 7 ASP A 15 0 SHEET 2 A 2 MET A 38 LYS A 46 -1 N THR A 45 O ALA A 8 SHEET 1 B 2 LYS B 7 ASP B 15 0 SHEET 2 B 2 MET B 38 LYS B 46 -1 N VAL B 45 O ALA B 8 LINK C ASP A 3 N LYZ A 4 1555 1555 1.32 LINK C LYZ A 4 N SER A 5 1555 1555 1.33 LINK SG CYS A 19 CAA DBV A 219 1555 1555 1.82 LINK C ASP B 3 N LYZ B 4 1555 1555 1.33 LINK C LYZ B 4 N SER B 5 1555 1555 1.33 LINK SG CYS B 19 CAA DBV B 219 1555 1555 1.82 LINK SG CYS C 50 CAA PEB C 250 1555 1555 1.84 LINK SG CYS C 61 CAD PEB C 250 1555 1555 1.85 LINK C GLY C 71 N MEN C 72 1555 1555 1.34 LINK C MEN C 72 N CYS C 73 1555 1555 1.33 LINK SG CYS C 82 CAA PEB C 282 1555 1555 1.83 LINK SG CYS C 158 CAA PEB C 258 1555 1555 1.83 LINK SG CYS D 50 CAA PEB D 250 1555 1555 1.83 LINK SG CYS D 61 CAD PEB D 250 1555 1555 1.84 LINK C GLY D 71 N MEN D 72 1555 1555 1.34 LINK C MEN D 72 N CYS D 73 1555 1555 1.34 LINK SG CYS D 82 CAA PEB D 282 1555 1555 1.83 LINK SG CYS D 158 CAA PEB D 258 1555 1555 1.85 LINK MG MG A 901 O HOH A 902 1555 1555 2.02 LINK MG MG A 901 O HOH A 903 1555 1555 2.02 LINK MG MG A 901 O HOH B 834 1555 1555 2.02 LINK MG MG A 901 O HOH B 837 1555 1555 2.05 LINK MG MG A 901 O HOH D 903 1555 1555 2.02 LINK MG MG A 901 O HOH D 904 1555 1555 2.05 LINK MG MG D 902 O HOH D 905 1555 1555 2.01 LINK MG MG D 902 O HOH D 906 1555 1555 2.04 LINK MG MG D 902 O HOH D 907 1555 1555 2.01 LINK MG MG D 902 O HOH D 908 1555 1555 2.05 LINK MG MG D 902 O HOH D 909 1555 1555 2.05 LINK MG MG D 902 O HOH D 910 1555 1555 2.01 SITE 1 AC1 5 ILE A 68 SER C 147 GLN C 148 PEB D 250 SITE 2 AC1 5 HOH D 951 SITE 1 AC2 6 HOH A 902 HOH A 903 HOH B 834 HOH B 837 SITE 2 AC2 6 HOH D 903 HOH D 904 SITE 1 AC3 6 HOH D 905 HOH D 906 HOH D 907 HOH D 908 SITE 2 AC3 6 HOH D 909 HOH D 910 SITE 1 AC4 27 PHE A 14 CYS A 19 SER A 20 ARG A 21 SITE 2 AC4 27 PRO A 23 LYS A 24 GLU A 25 SER A 26 SITE 3 AC4 27 GLU A 37 MET A 38 MET A 39 LYS A 41 SITE 4 AC4 27 HOH A 905 HOH A 907 HOH A 919 HOH A 920 SITE 5 AC4 27 HOH A 956 HOH A 999 HOH A1000 HOH A1003 SITE 6 AC4 27 LEU B 62 MET B 65 THR B 66 TYR C 18 SITE 7 AC4 27 PRO D 64 SER D 65 ILE D 67 SITE 1 AC5 27 PHE A 64 ASN A 76 PHE B 14 CYS B 19 SITE 2 AC5 27 SER B 20 ARG B 21 PRO B 23 LYS B 24 SITE 3 AC5 27 GLU B 25 TYR B 26 ASP B 36 GLU B 37 SITE 4 AC5 27 MET B 38 MET B 39 LYS B 41 HOH B 367 SITE 5 AC5 27 HOH B 368 HOH B 415 HOH B 448 HOH B 456 SITE 6 AC5 27 HOH B 599 HOH B 600 HOH B 627 SER C 65 SITE 7 AC5 27 ILE C 67 SER C 68 HOH D1082 SITE 1 AC6 27 PHE A 64 GLU A 65 ASP A 69 PRO A 71 SITE 2 AC6 27 PHE A 72 THR A 73 SER A 74 CYS C 50 SITE 3 AC6 27 ASP C 54 SER C 57 GLY C 58 CYS C 61 SITE 4 AC6 27 ARG C 129 ALA C 136 CYS C 137 PHE C 141 SITE 5 AC6 27 ALA C 146 SER C 147 GLN C 148 HOH C 909 SITE 6 AC6 27 HOH C 910 HOH C 964 HOH C1006 HOH C1007 SITE 7 AC6 27 HOH C1118 LYS D 29 HOH D 992 SITE 1 AC7 23 MET A 2 LYZ A 4 SER A 5 ALA A 6 SITE 2 AC7 23 MET C 59 MEN C 72 CYS C 73 ARG C 77 SITE 3 AC7 23 ARG C 78 ALA C 81 CYS C 82 ARG C 84 SITE 4 AC7 23 ASP C 85 ILE C 88 ARG C 108 TYR C 117 SITE 5 AC7 23 LEU C 120 VAL C 122 ASN C 127 HOH C1020 SITE 6 AC7 23 HOH C1024 HOH C1026 HOH C1028 SITE 1 AC8 26 ILE A 13 ARG A 17 GLN A 34 MET A 38 SITE 2 AC8 26 MET A 39 LYS C 28 ASN C 35 LYS C 36 SITE 3 AC8 26 LEU C 38 ASP C 39 SER C 40 VAL C 142 SITE 4 AC8 26 ASN C 143 ASN C 144 THR C 153 PRO C 154 SITE 5 AC8 26 GLN C 155 GLY C 156 CYS C 158 HOH C 926 SITE 6 AC8 26 HOH C 927 HOH C 929 HOH C 977 HOH C 978 SITE 7 AC8 26 HOH C1091 HOH D1073 SITE 1 AC9 23 GLY A 67 ILE A 68 LYS B 64 GLN C 148 SITE 2 AC9 23 CL C 903 HOH C1089 ASN D 47 CYS D 50 SITE 3 AC9 23 ASP D 54 SER D 57 GLY D 58 CYS D 61 SITE 4 AC9 23 ARG D 129 ALA D 136 CYS D 137 PHE D 141 SITE 5 AC9 23 HOH D 932 HOH D 934 HOH D 947 HOH D 949 SITE 6 AC9 23 HOH D 950 HOH D 961 HOH D 962 SITE 1 BC1 23 MET B 2 LYZ B 4 SER B 5 ALA B 6 SITE 2 BC1 23 MEN D 72 CYS D 73 ARG D 77 ARG D 78 SITE 3 BC1 23 ALA D 81 CYS D 82 ARG D 84 ASP D 85 SITE 4 BC1 23 ILE D 88 ARG D 108 TYR D 117 LEU D 120 SITE 5 BC1 23 VAL D 122 ASN D 127 HOH D1150 HOH D1159 SITE 6 BC1 23 HOH D1163 HOH D1164 HOH D1165 SITE 1 BC2 27 ILE B 13 ASP B 15 ARG B 17 MET B 38 SITE 2 BC2 27 LEU D 24 LYS D 28 ASN D 35 LYS D 36 SITE 3 BC2 27 LEU D 38 ASP D 39 SER D 40 VAL D 142 SITE 4 BC2 27 LEU D 151 THR D 153 PRO D 154 GLN D 155 SITE 5 BC2 27 GLY D 156 CYS D 158 HOH D 984 HOH D 988 SITE 6 BC2 27 HOH D 989 HOH D 990 HOH D1051 HOH D1053 SITE 7 BC2 27 HOH D1107 HOH D1108 HOH D1184 CRYST1 63.030 82.630 89.550 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015865 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012102 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011167 0.00000 MTRIX1 1 -0.905900 -0.352000 0.235400 3.61400 1 MTRIX2 1 -0.366100 0.371900 -0.853000 42.07700 1 MTRIX3 1 0.212800 -0.858900 -0.465800 64.81100 1 MTRIX1 2 -0.877800 -0.398500 0.265700 3.53000 1 MTRIX2 2 -0.416200 0.360100 -0.834900 42.99100 1 MTRIX3 2 0.237000 -0.843500 -0.482000 64.36200 1