HEADER VIRAL PROTEIN 29-APR-99 1QHD TITLE CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP A TITLE 2 ROTAVIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: VIRAL CAPSID VP6; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: ONE MONOMER IN ASYMETRIC UNIT SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOVINE ROTAVIRUS; SOURCE 3 ORGANISM_TAXID: 129818; SOURCE 4 STRAIN: RF; SOURCE 5 GENE: SEGMENT 6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS KEYWDS VIRAL CAPSID PROTEIN, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.MATHIEU,I.PETITPAS,F.A.REY REVDAT 6 30-OCT-24 1QHD 1 REMARK REVDAT 5 27-DEC-23 1QHD 1 REMARK LINK REVDAT 4 13-JUL-11 1QHD 1 VERSN REVDAT 3 24-FEB-09 1QHD 1 VERSN REVDAT 2 01-APR-03 1QHD 1 JRNL REVDAT 1 13-APR-01 1QHD 0 JRNL AUTH M.MATHIEU,I.PETITPAS,J.NAVAZA,J.LEPAULT,E.KOHLI,P.POTHIER, JRNL AUTH 2 B.V.PRASAD,J.COHEN,F.A.REY JRNL TITL ATOMIC STRUCTURE OF THE MAJOR CAPSID PROTEIN OF ROTAVIRUS: JRNL TITL 2 IMPLICATIONS FOR THE ARCHITECTURE OF THE VIRION. JRNL REF EMBO J. V. 20 1485 2001 JRNL REFN ISSN 0261-4189 JRNL PMID 11285213 JRNL DOI 10.1093/EMBOJ/20.7.1485 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.PETITPAS,J.LEPAULT,P.VACHETTE,A.CHARPILIENNE,M.MATHIEU, REMARK 1 AUTH 2 E.KOHLI,P.POTHIER,J.COHEN,F.A.REY REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF ROTAVIRUS REMARK 1 TITL 2 PROTEIN VP6 REMARK 1 REF J.VIROL. V. 72 7615 1998 REMARK 1 REFN ISSN 0022-538X REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 48467 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2444 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4432 REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.52 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 266 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3162 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.629 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.94 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.425 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.367 ; 1.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.297 ; 1.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.876 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.010 ; 2.000 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARHCSDX.PRO REMARK 3 PARAMETER FILE 2 : PARAMETER.ELEMENTS REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : TOPH19.ION REMARK 3 TOPOLOGY FILE 4 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QHD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001052. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-AUG-98; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; NULL REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG; EMBL/DESY, REMARK 200 HAMBURG REMARK 200 BEAMLINE : X11; BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8800; 0.8800 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; NULL REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48534 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 42.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 7.20000 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 25.2000 REMARK 200 FOR SHELL : 5.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HEPES PH 7.5, 200MM CACL2, 14 TO 20% REMARK 280 PEG 550, PH 7.5, VAPOR DIFFUSION, HANGING DROP, VAPOR DIFFUSION, REMARK 280 HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+3/4,X+1/4,-Z+1/4 REMARK 290 14555 -Y+3/4,-X+3/4,-Z+3/4 REMARK 290 15555 Y+1/4,-X+1/4,Z+3/4 REMARK 290 16555 -Y+1/4,X+3/4,Z+1/4 REMARK 290 17555 X+3/4,Z+1/4,-Y+1/4 REMARK 290 18555 -X+1/4,Z+3/4,Y+1/4 REMARK 290 19555 -X+3/4,-Z+3/4,-Y+3/4 REMARK 290 20555 X+1/4,-Z+1/4,Y+3/4 REMARK 290 21555 Z+3/4,Y+1/4,-X+1/4 REMARK 290 22555 Z+1/4,-Y+1/4,X+3/4 REMARK 290 23555 -Z+1/4,Y+3/4,X+1/4 REMARK 290 24555 -Z+3/4,-Y+3/4,-X+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 78.89000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 78.89000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 78.89000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 78.89000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 78.89000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 78.89000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 78.89000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 78.89000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 78.89000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 78.89000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 78.89000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 78.89000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 78.89000 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 118.33500 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 39.44500 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 118.33500 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 118.33500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 118.33500 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 39.44500 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 118.33500 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 39.44500 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 118.33500 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 39.44500 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 118.33500 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 39.44500 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 39.44500 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 118.33500 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 39.44500 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 118.33500 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 118.33500 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 118.33500 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 39.44500 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 118.33500 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 118.33500 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 39.44500 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 39.44500 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 39.44500 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 118.33500 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 39.44500 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 118.33500 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 39.44500 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 118.33500 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 118.33500 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 118.33500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 15230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -186.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 ZN ZN A 501 LIES ON A SPECIAL POSITION. REMARK 375 CL CL A 502 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 503 LIES ON A SPECIAL POSITION. REMARK 375 CA CA A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 890 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 891 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 892 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 893 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA CA A 508 O HOH A 794 1.40 REMARK 500 O HOH A 658 O HOH A 812 1.89 REMARK 500 OD2 ASP A 90 O HOH A 762 2.04 REMARK 500 O HOH A 659 O HOH A 758 2.15 REMARK 500 OE1 GLN A 112 O HOH A 848 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 876 O HOH A 876 18545 1.87 REMARK 500 CG2 THR A 148 O HOH A 827 22554 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 390 CA SER A 390 CB 0.111 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 147 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 236 NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 62 63.66 -152.37 REMARK 500 ASP A 130 67.93 32.55 REMARK 500 ASN A 175 70.92 -151.38 REMARK 500 ASP A 228 147.25 82.13 REMARK 500 ASN A 284 109.78 -165.52 REMARK 500 VAL A 360 -60.05 -100.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 47 OE1 REMARK 620 2 ASP A 62 OD1 151.5 REMARK 620 3 ASP A 62 OD2 158.0 47.5 REMARK 620 4 HOH A 681 O 75.4 76.7 117.9 REMARK 620 5 HOH A 779 O 86.5 76.0 114.9 62.9 REMARK 620 6 HOH A 783 O 94.1 83.9 74.3 75.1 136.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 603 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 151 O REMARK 620 2 GLU A 340 OE2 100.7 REMARK 620 3 HOH A 628 O 105.2 95.2 REMARK 620 4 HOH A 847 O 67.1 47.8 135.2 REMARK 620 5 HOH A 886 O 86.2 115.4 145.1 79.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 153 NE2 REMARK 620 2 HIS A 153 NE2 101.2 REMARK 620 3 HIS A 153 NE2 101.2 101.2 REMARK 620 4 CL A 502 CL 116.8 116.8 116.8 REMARK 620 5 CL A 502 CL 116.8 116.8 116.8 0.0 REMARK 620 6 CL A 502 CL 116.8 116.8 116.8 0.0 0.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 508 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 266 OD1 REMARK 620 2 ASN A 266 OD1 99.6 REMARK 620 3 ASP A 286 OD2 92.4 93.5 REMARK 620 4 ASP A 286 OD2 93.3 92.6 170.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 268 OE1 REMARK 620 2 GLU A 379 OE2 91.0 REMARK 620 3 HOH A 652 O 150.7 79.6 REMARK 620 4 HOH A 668 O 69.5 84.4 135.9 REMARK 620 5 HOH A 767 O 89.0 175.8 102.3 91.6 REMARK 620 6 HOH A 789 O 143.3 97.0 65.9 75.7 80.5 REMARK 620 7 HOH A 845 O 91.4 86.5 60.6 158.6 97.7 124.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 503 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 766 O REMARK 620 2 HOH A 766 O 105.1 REMARK 620 3 HOH A 766 O 105.1 105.1 REMARK 620 4 HOH A 874 O 71.3 48.9 147.8 REMARK 620 5 HOH A 874 O 147.8 71.3 48.9 118.8 REMARK 620 6 HOH A 874 O 48.9 147.8 71.3 118.8 118.8 REMARK 620 7 HOH A 890 O 113.5 113.5 113.5 96.3 96.3 96.3 REMARK 620 8 HOH A 890 O 113.5 113.5 113.5 96.3 96.3 96.3 0.0 REMARK 620 9 HOH A 890 O 113.5 113.5 113.5 96.3 96.3 96.3 0.0 0.0 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: ZNB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: THE ZINC SITS ON A THREE-FOLD AXIS. THE ZINC REMARK 800 BINDING SITE FORMED BY THREE SYMMETRICALLY-RELATED PLUS ONE REMARK 800 WATER MOLECULE ON THE THREE-FOLD AXIS. REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 603 REMARK 999 REMARK 999 SEQUENCE REMARK 999 N-ACETYLATION IN THE STRUCTURE, NUMBERED AS RESIDUE ACE A 0 REMARK 999 ERROR IN CDNA SEQUENCING GLN142 WRITTEN REMARK 999 AS PRO IN DATABASE (UNDER CORRECTION) DBREF 1QHD A 1 397 UNP P04509 VS06_ROTBR 1 397 SEQADV 1QHD GLN A 142 UNP P04509 PRO SEE REMARK 999 SEQRES 1 A 398 ACE MET ASP VAL LEU TYR SER LEU SER LYS THR LEU LYS SEQRES 2 A 398 ASP ALA ARG ASP LYS ILE VAL GLU GLY THR LEU TYR SER SEQRES 3 A 398 ASN VAL SER ASP LEU ILE GLN GLN PHE ASN GLN MET ILE SEQRES 4 A 398 ILE THR MET ASN GLY ASN GLU PHE GLN THR GLY GLY ILE SEQRES 5 A 398 GLY ASN LEU PRO ILE ARG ASN TRP ASN PHE ASP PHE GLY SEQRES 6 A 398 LEU LEU GLY THR THR LEU LEU ASN LEU ASP ALA ASN TYR SEQRES 7 A 398 VAL GLU THR ALA ARG ASN THR ILE ASP TYR PHE VAL ASP SEQRES 8 A 398 PHE VAL ASP ASN VAL CYS MET ASP GLU MET VAL ARG GLU SEQRES 9 A 398 SER GLN ARG ASN GLY ILE ALA PRO GLN SER ASP SER LEU SEQRES 10 A 398 ILE LYS LEU SER GLY ILE LYS PHE LYS ARG ILE ASN PHE SEQRES 11 A 398 ASP ASN SER SER GLU TYR ILE GLU ASN TRP ASN LEU GLN SEQRES 12 A 398 ASN ARG ARG GLN ARG THR GLY PHE THR PHE HIS LYS PRO SEQRES 13 A 398 ASN ILE PHE PRO TYR SER ALA SER PHE THR LEU ASN ARG SEQRES 14 A 398 SER GLN PRO ALA HIS ASP ASN LEU MET GLY THR MET TRP SEQRES 15 A 398 LEU ASN ALA GLY SER GLU ILE GLN VAL ALA GLY PHE ASP SEQRES 16 A 398 TYR SER CYS ALA ILE ASN ALA PRO ALA ASN THR GLN GLN SEQRES 17 A 398 PHE GLU HIS ILE VAL GLN LEU ARG ARG VAL LEU THR THR SEQRES 18 A 398 ALA THR ILE THR LEU LEU PRO ASP ALA GLU ARG PHE SER SEQRES 19 A 398 PHE PRO ARG VAL ILE THR SER ALA ASP GLY ALA THR THR SEQRES 20 A 398 TRP TYR PHE ASN PRO VAL ILE LEU ARG PRO ASN ASN VAL SEQRES 21 A 398 GLU ILE GLU PHE LEU LEU ASN GLY GLN ILE ILE ASN THR SEQRES 22 A 398 TYR GLN ALA ARG PHE GLY THR ILE ILE ALA ARG ASN PHE SEQRES 23 A 398 ASP THR ILE ARG LEU SER PHE GLN LEU MET ARG PRO PRO SEQRES 24 A 398 ASN MET THR PRO ALA VAL ALA ALA LEU PHE PRO ASN ALA SEQRES 25 A 398 GLN PRO PHE GLU HIS HIS ALA THR VAL GLY LEU THR LEU SEQRES 26 A 398 ARG ILE GLU SER ALA VAL CYS GLU SER VAL LEU ALA ASP SEQRES 27 A 398 ALA SER GLU THR MET LEU ALA ASN VAL THR SER VAL ARG SEQRES 28 A 398 GLN GLU TYR ALA ILE PRO VAL GLY PRO VAL PHE PRO PRO SEQRES 29 A 398 GLY MET ASN TRP THR ASP LEU ILE THR ASN TYR SER PRO SEQRES 30 A 398 SER ARG GLU ASP ASN LEU GLN ARG VAL PHE THR VAL ALA SEQRES 31 A 398 SER ILE ARG SER MET LEU VAL LYS HET ACE A 0 3 HET ZN A 501 1 HET CL A 502 1 HET CA A 503 1 HET CA A 508 1 HET CA A 601 1 HET CA A 602 1 HET CA A 603 1 HETNAM ACE ACETYL GROUP HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETNAM CA CALCIUM ION FORMUL 1 ACE C2 H4 O FORMUL 2 ZN ZN 2+ FORMUL 3 CL CL 1- FORMUL 4 CA 5(CA 2+) FORMUL 9 HOH *290(H2 O) HELIX 1 1 ASP A 2 LYS A 17 1 16 HELIX 2 2 TYR A 24 ASN A 26 5 3 HELIX 3 3 SER A 28 MET A 41 1 14 HELIX 4 4 ALA A 75 MET A 100 1 26 HELIX 5 5 ASP A 114 SER A 120 1 7 HELIX 6 6 ILE A 122 ILE A 127 5 6 HELIX 7 7 GLU A 134 ARG A 144 1 11 HELIX 8 8 PRO A 202 ASN A 204 5 3 HELIX 9 9 GLU A 230 PHE A 232 5 3 HELIX 10 10 PRO A 302 LEU A 307 1 6 HELIX 11 11 MET A 342 GLU A 352 1 11 HELIX 12 12 PRO A 363 MET A 365 5 3 HELIX 13 13 TRP A 367 THR A 372 1 6 HELIX 14 14 PRO A 376 MET A 394 1 19 SHEET 1 A 2 GLU A 45 THR A 48 0 SHEET 2 A 2 ARG A 57 ASN A 60 -1 N TRP A 59 O PHE A 46 SHEET 1 B 4 PHE A 150 HIS A 153 0 SHEET 2 B 4 LEU A 322 CYS A 331 -1 N CYS A 331 O PHE A 150 SHEET 3 B 4 ALA A 221 PRO A 227 -1 N LEU A 226 O THR A 323 SHEET 4 B 4 GLY A 278 ALA A 282 -1 N ALA A 282 O ALA A 221 SHEET 1 C 5 PRO A 251 ILE A 253 0 SHEET 2 C 5 HIS A 317 ARG A 325 1 N HIS A 317 O VAL A 252 SHEET 3 C 5 GLU A 187 ASP A 194 -1 N ASP A 194 O ALA A 318 SHEET 4 C 5 MET A 177 ALA A 184 -1 N ALA A 184 O GLU A 187 SHEET 5 C 5 SER A 161 ARG A 168 -1 N ARG A 168 O MET A 177 SHEET 1 D 4 THR A 205 GLN A 213 0 SHEET 2 D 4 THR A 287 MET A 295 -1 N LEU A 294 O GLN A 206 SHEET 3 D 4 GLU A 260 LEU A 265 -1 N LEU A 264 O THR A 287 SHEET 4 D 4 GLN A 268 GLN A 274 -1 N TYR A 273 O ILE A 261 SHEET 1 E 2 ARG A 236 THR A 239 0 SHEET 2 E 2 THR A 246 PHE A 249 -1 N PHE A 249 O ARG A 236 LINK C ACE A 0 N MET A 1 1555 1555 1.33 LINK OE1 GLN A 47 CA CA A 602 1555 1555 2.58 LINK OD1 ASP A 62 CA CA A 602 18545 1555 2.61 LINK OD2 ASP A 62 CA CA A 602 18545 1555 2.84 LINK O THR A 151 CA CA A 603 1555 1555 2.43 LINK NE2 HIS A 153 ZN ZN A 501 1555 1555 1.96 LINK NE2 HIS A 153 ZN ZN A 501 5555 1555 1.96 LINK NE2 HIS A 153 ZN ZN A 501 9555 1555 1.96 LINK OD1 ASN A 266 CA CA A 508 1555 1555 2.15 LINK OD1 ASN A 266 CA CA A 508 22554 1555 2.15 LINK OE1 GLN A 268 CA CA A 601 22554 1555 2.57 LINK OD2 ASP A 286 CA CA A 508 1555 1555 2.36 LINK OD2 ASP A 286 CA CA A 508 22554 1555 2.36 LINK OE2 GLU A 340 CA CA A 603 1555 1555 2.08 LINK OE2 GLU A 379 CA CA A 601 1555 1555 2.48 LINK ZN ZN A 501 CL CL A 502 1555 1555 2.18 LINK ZN ZN A 501 CL CL A 502 1555 5555 2.18 LINK ZN ZN A 501 CL CL A 502 1555 9555 2.18 LINK CA CA A 503 O HOH A 766 1555 1555 3.26 LINK CA CA A 503 O HOH A 766 1555 9555 3.26 LINK CA CA A 503 O HOH A 766 1555 5555 3.26 LINK CA CA A 503 O HOH A 874 1555 1555 2.04 LINK CA CA A 503 O HOH A 874 1555 9555 2.04 LINK CA CA A 503 O HOH A 874 1555 5555 2.04 LINK CA CA A 503 O HOH A 890 1555 1555 2.61 LINK CA CA A 503 O HOH A 890 1555 5555 2.61 LINK CA CA A 503 O HOH A 890 1555 9555 2.61 LINK CA CA A 601 O HOH A 652 1555 1555 3.01 LINK CA CA A 601 O HOH A 668 1555 1555 2.35 LINK CA CA A 601 O HOH A 767 1555 1555 2.17 LINK CA CA A 601 O HOH A 789 1555 1555 3.08 LINK CA CA A 601 O HOH A 845 1555 1555 2.28 LINK CA CA A 602 O HOH A 681 1555 1555 2.74 LINK CA CA A 602 O HOH A 779 1555 18545 2.62 LINK CA CA A 602 O HOH A 783 1555 1555 2.61 LINK CA CA A 603 O HOH A 628 1555 1555 2.40 LINK CA CA A 603 O HOH A 847 1555 1555 3.19 LINK CA CA A 603 O HOH A 886 1555 1555 2.55 CISPEP 1 GLN A 312 PRO A 313 0 -0.71 SITE 1 ZNB 1 HIS A 153 SITE 1 AC1 2 HIS A 153 CL A 502 SITE 1 AC2 2 HIS A 153 ZN A 501 SITE 1 AC3 2 HOH A 874 HOH A 890 SITE 1 AC4 3 ASN A 266 ASP A 286 HOH A 794 SITE 1 AC5 7 GLN A 268 GLU A 379 HOH A 652 HOH A 668 SITE 2 AC5 7 HOH A 767 HOH A 789 HOH A 845 SITE 1 AC6 5 GLN A 47 ASP A 62 HOH A 681 HOH A 779 SITE 2 AC6 5 HOH A 783 SITE 1 AC7 4 THR A 151 GLU A 340 HOH A 628 HOH A 886 CRYST1 157.780 157.780 157.780 90.00 90.00 90.00 P 41 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006338 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006338 0.00000 HETATM 1 C ACE A 0 23.020 -7.210 2.939 1.00 20.03 C HETATM 2 O ACE A 0 21.935 -7.453 3.440 1.00 20.41 O HETATM 3 CH3 ACE A 0 23.730 -8.270 2.147 1.00 20.18 C