HEADER HYDROLASE 14-MAY-99 1QHH TITLE STRUCTURE OF DNA HELICASE WITH ADPNP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (PCRA (SUBUNIT)); COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PROTEIN (PCRA (SUBUNIT)); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: PROTEIN (PCRA (SUBUNIT)); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 4; COMPND 14 MOLECULE: PROTEIN (PCRA (SUBUNIT)); COMPND 15 CHAIN: D; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 1422; SOURCE 4 STRAIN: NCA1503; SOURCE 5 GENE: PCRA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 10 EXPRESSION_SYSTEM_GENE: PCRA; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 13 ORGANISM_TAXID: 1422; SOURCE 14 STRAIN: NCA1503; SOURCE 15 GENE: PCRA; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 20 EXPRESSION_SYSTEM_GENE: PCRA; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 23 ORGANISM_TAXID: 1422; SOURCE 24 STRAIN: NCA1503; SOURCE 25 GENE: PCRA; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 27 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 28 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 29 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 30 EXPRESSION_SYSTEM_GENE: PCRA; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: GEOBACILLUS STEAROTHERMOPHILUS; SOURCE 33 ORGANISM_TAXID: 1422; SOURCE 34 STRAIN: NCA1503; SOURCE 35 GENE: PCRA; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 37 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 38 EXPRESSION_SYSTEM_VECTOR_TYPE: T7 PROMOTER; SOURCE 39 EXPRESSION_SYSTEM_PLASMID: PET22; SOURCE 40 EXPRESSION_SYSTEM_GENE: PCRA KEYWDS DNA REPAIR, DNA REPLICATION, SOS RESPONSE, HELICASE, ATP-BINDING, KEYWDS 2 DNA-BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.SOULTANAS,M.S.DILLINGHAM,S.S.VELANKAR,D.B.WIGLEY REVDAT 4 27-DEC-23 1QHH 1 REMARK REVDAT 3 24-FEB-09 1QHH 1 VERSN REVDAT 2 26-SEP-01 1QHH 3 ATOM REVDAT 1 13-JUL-99 1QHH 0 JRNL AUTH P.SOULTANAS,M.S.DILLINGHAM,S.S.VELANKAR,D.B.WIGLEY JRNL TITL DNA BINDING MEDIATES CONFORMATIONAL CHANGES AND METAL ION JRNL TITL 2 COORDINATION IN THE ACTIVE SITE OF PCRA HELICASE. JRNL REF J.MOL.BIOL. V. 290 137 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 10388562 JRNL DOI 10.1006/JMBI.1999.2873 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 37802 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5052 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 31 REMARK 3 SOLVENT ATOMS : 94 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 3.047 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1QHH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-MAY-99. REMARK 100 THE DEPOSITION ID IS D_1000001062. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 287 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8700 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42105 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 10.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.5 REMARK 200 DATA REDUNDANCY : 2.360 REMARK 200 R MERGE (I) : 0.10300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 67.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.76 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.42800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.21400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 55.82100 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 18.60700 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 93.03500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21010 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -130.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 165 REMARK 465 SER A 166 REMARK 465 THR A 167 REMARK 465 LYS B 429 REMARK 465 LEU B 430 REMARK 465 VAL B 431 REMARK 465 ARG B 432 REMARK 465 TYR B 433 REMARK 465 ALA B 434 REMARK 465 ALA B 435 REMARK 465 ASP B 436 REMARK 465 HIS B 437 REMARK 465 GLU B 438 REMARK 465 LEU B 439 REMARK 465 SER B 440 REMARK 465 ASP C 543 REMARK 465 LEU C 544 REMARK 465 ASP C 545 REMARK 465 GLU C 546 REMARK 465 LEU C 547 REMARK 465 ASP C 548 REMARK 465 GLY C 549 REMARK 465 THR C 550 REMARK 465 GLU C 551 REMARK 465 GLN C 552 REMARK 465 ALA C 553 REMARK 465 ALA C 554 REMARK 465 GLU C 555 REMARK 465 ARG D 652 REMARK 465 GLN D 653 REMARK 465 ALA D 654 REMARK 465 GLY D 655 REMARK 465 ALA D 656 REMARK 465 SER D 657 REMARK 465 ARG D 658 REMARK 465 PRO D 659 REMARK 465 ALA D 660 REMARK 465 VAL D 661 REMARK 465 SER D 662 REMARK 465 ARG D 663 REMARK 465 PRO D 664 REMARK 465 GLN D 665 REMARK 465 ALA D 666 REMARK 465 SER D 667 REMARK 465 GLY D 668 REMARK 465 ALA D 669 REMARK 465 VAL D 670 REMARK 465 GLY D 671 REMARK 465 SER D 672 REMARK 465 TRP D 673 REMARK 465 LYS D 674 REMARK 465 VAL D 675 REMARK 465 GLY D 676 REMARK 465 ASP D 677 REMARK 465 ARG D 678 REMARK 465 ALA D 679 REMARK 465 ASN D 680 REMARK 465 HIS D 681 REMARK 465 ARG D 682 REMARK 465 LYS D 683 REMARK 465 TRP D 684 REMARK 465 GLY D 685 REMARK 465 ILE D 686 REMARK 465 GLY D 687 REMARK 465 THR D 688 REMARK 465 VAL D 689 REMARK 465 VAL D 690 REMARK 465 SER D 691 REMARK 465 VAL D 692 REMARK 465 ARG D 693 REMARK 465 GLY D 694 REMARK 465 GLY D 695 REMARK 465 GLY D 696 REMARK 465 ASP D 697 REMARK 465 ASP D 698 REMARK 465 GLN D 699 REMARK 465 GLU D 700 REMARK 465 LEU D 701 REMARK 465 ASP D 702 REMARK 465 ILE D 703 REMARK 465 ALA D 704 REMARK 465 PHE D 705 REMARK 465 PRO D 706 REMARK 465 SER D 707 REMARK 465 PRO D 708 REMARK 465 ILE D 709 REMARK 465 GLY D 710 REMARK 465 ILE D 711 REMARK 465 LYS D 712 REMARK 465 ARG D 713 REMARK 465 LEU D 714 REMARK 465 LEU D 715 REMARK 465 ALA D 716 REMARK 465 LYS D 717 REMARK 465 PHE D 718 REMARK 465 ALA D 719 REMARK 465 PRO D 720 REMARK 465 ILE D 721 REMARK 465 GLU D 722 REMARK 465 LYS D 723 REMARK 465 VAL D 724 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP B 428 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 302 NE2 HIS B 302 CD2 -0.074 REMARK 500 HIS C 521 NE2 HIS C 521 CD2 -0.072 REMARK 500 HIS D 644 NE2 HIS D 644 CD2 -0.071 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 3 CB - CG - CD2 ANGL. DEV. = -4.8 DEGREES REMARK 500 TRP A 57 CD1 - CG - CD2 ANGL. DEV. = 5.9 DEGREES REMARK 500 TRP A 57 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 TRP A 88 CD1 - CG - CD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 TRP A 88 CE2 - CD2 - CG ANGL. DEV. = -6.2 DEGREES REMARK 500 LYS A 137 CA - C - N ANGL. DEV. = -15.4 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG B 230 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 258 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG B 258 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 TRP B 259 CD1 - CG - CD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 TRP B 259 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG B 287 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 THR B 289 N - CA - CB ANGL. DEV. = -12.7 DEGREES REMARK 500 ARG B 291 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 310 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B 310 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 310 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 TRP B 312 CD1 - CG - CD2 ANGL. DEV. = 6.5 DEGREES REMARK 500 TRP B 312 CE2 - CD2 - CG ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG B 349 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG B 359 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 359 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 SER B 425 N - CA - C ANGL. DEV. = 20.5 DEGREES REMARK 500 THR B 426 N - CA - C ANGL. DEV. = -17.4 DEGREES REMARK 500 LEU C 448 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG C 465 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 TRP C 471 CD1 - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP C 471 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG C 501 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG D 589 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 LEU D 591 O - C - N ANGL. DEV. = 12.9 DEGREES REMARK 500 ARG D 610 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG D 610 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG D 623 CA - CB - CG ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 11 -7.16 -163.63 REMARK 500 ARG A 101 0.65 -59.51 REMARK 500 PRO A 118 -9.28 -53.85 REMARK 500 GLU A 131 3.39 -64.07 REMARK 500 LYS A 132 -78.48 -141.84 REMARK 500 ILE A 134 94.67 -64.53 REMARK 500 ASP A 135 -94.64 -53.67 REMARK 500 LYS A 138 -42.93 99.16 REMARK 500 PHE A 139 50.89 -99.43 REMARK 500 TYR B 169 -48.99 -28.13 REMARK 500 GLU B 241 -28.39 -39.45 REMARK 500 TYR B 274 73.10 -112.48 REMARK 500 LYS B 309 134.09 -172.70 REMARK 500 GLU B 345 46.55 -75.89 REMARK 500 ARG B 346 -2.45 -171.28 REMARK 500 ARG B 352 2.77 -69.71 REMARK 500 ARG B 420 103.73 -48.02 REMARK 500 ALA B 424 -48.22 163.67 REMARK 500 GLU C 447 48.30 -86.31 REMARK 500 MET C 450 -58.00 -152.02 REMARK 500 LEU C 453 117.55 19.44 REMARK 500 ALA C 455 -60.32 7.50 REMARK 500 GLN C 475 -8.84 -57.70 REMARK 500 ALA C 539 42.55 -93.35 REMARK 500 LEU C 540 -39.68 -153.87 REMARK 500 ILE C 541 30.38 -88.31 REMARK 500 GLU D 592 -70.26 -52.48 REMARK 500 ALA D 649 -170.20 44.58 REMARK 500 SER D 650 85.71 178.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP A 135 PRO A 136 -146.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 73 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 700 DBREF 1QHH A 1 167 UNP P56255 PCRA_BACST 1 167 DBREF 1QHH B 168 440 UNP P56255 PCRA_BACST 168 440 DBREF 1QHH C 441 555 UNP P56255 PCRA_BACST 441 555 DBREF 1QHH D 556 724 UNP P56255 PCRA_BACST 556 724 SEQRES 1 A 167 MET ASN PHE LEU SER GLU GLN LEU LEU ALA HIS LEU ASN SEQRES 2 A 167 LYS GLU GLN GLN GLU ALA VAL ARG THR THR GLU GLY PRO SEQRES 3 A 167 LEU LEU ILE MET ALA GLY ALA GLY SER GLY LYS THR ARG SEQRES 4 A 167 VAL LEU THR HIS ARG ILE ALA TYR LEU MET ALA GLU LYS SEQRES 5 A 167 HIS VAL ALA PRO TRP ASN ILE LEU ALA ILE THR PHE THR SEQRES 6 A 167 ASN LYS ALA ALA ARG GLU MET ARG GLU ARG VAL GLN SER SEQRES 7 A 167 LEU LEU GLY GLY ALA ALA GLU ASP VAL TRP ILE SER THR SEQRES 8 A 167 PHE HIS SER MET CYS VAL ARG ILE LEU ARG ARG ASP ILE SEQRES 9 A 167 ASP ARG ILE GLY ILE ASN ARG ASN PHE SER ILE LEU ASP SEQRES 10 A 167 PRO THR ASP GLN LEU SER VAL MET LYS THR ILE LEU LYS SEQRES 11 A 167 GLU LYS ASN ILE ASP PRO LYS LYS PHE GLU PRO ARG THR SEQRES 12 A 167 ILE LEU GLY THR ILE SER ALA ALA LYS ASN GLU LEU LEU SEQRES 13 A 167 PRO PRO GLU GLN PHE ALA LYS ARG ALA SER THR SEQRES 1 B 273 TYR TYR GLU LYS VAL VAL SER ASP VAL TYR GLN GLU TYR SEQRES 2 B 273 GLN GLN ARG LEU LEU ARG ASN HIS SER LEU ASP PHE ASP SEQRES 3 B 273 ASP LEU ILE MET THR THR ILE GLN LEU PHE ASP ARG VAL SEQRES 4 B 273 PRO ASP VAL LEU HIS TYR TYR GLN TYR LYS PHE GLN TYR SEQRES 5 B 273 ILE HIS ILE ASP GLU TYR GLN ASP THR ASN ARG ALA GLN SEQRES 6 B 273 TYR THR LEU VAL LYS LYS LEU ALA GLU ARG PHE GLN ASN SEQRES 7 B 273 ILE CYS ALA VAL GLY ASP ALA ASP GLN SER ILE TYR ARG SEQRES 8 B 273 TRP ARG GLY ALA ASP ILE GLN ASN ILE LEU SER PHE GLU SEQRES 9 B 273 ARG ASP TYR PRO ASN ALA LYS VAL ILE LEU LEU GLU GLN SEQRES 10 B 273 ASN TYR ARG SER THR LYS ARG ILE LEU GLN ALA ALA ASN SEQRES 11 B 273 GLU VAL ILE GLU HIS ASN VAL ASN ARG LYS PRO LYS ARG SEQRES 12 B 273 ILE TRP THR GLU ASN PRO GLU GLY LYS PRO ILE LEU TYR SEQRES 13 B 273 TYR GLU ALA MET ASN GLU ALA ASP GLU ALA GLN PHE VAL SEQRES 14 B 273 ALA GLY ARG ILE ARG GLU ALA VAL GLU ARG GLY GLU ARG SEQRES 15 B 273 ARG TYR ARG ASP PHE ALA VAL LEU TYR ARG THR ASN ALA SEQRES 16 B 273 GLN SER ARG VAL MET GLU GLU MET LEU LEU LYS ALA ASN SEQRES 17 B 273 ILE PRO TYR GLN ILE VAL GLY GLY LEU LYS PHE TYR ASP SEQRES 18 B 273 ARG LYS GLU ILE LYS ASP ILE LEU ALA TYR LEU ARG VAL SEQRES 19 B 273 ILE ALA ASN PRO ASP ASP ASP LEU SER LEU LEU ARG ILE SEQRES 20 B 273 ILE ASN VAL PRO LYS ARG GLY ILE GLY ALA SER THR ILE SEQRES 21 B 273 ASP LYS LEU VAL ARG TYR ALA ALA ASP HIS GLU LEU SER SEQRES 1 C 115 LEU PHE GLU ALA LEU GLY GLU LEU GLU MET ILE GLY LEU SEQRES 2 C 115 GLY ALA LYS ALA ALA GLY ALA LEU ALA ALA PHE ARG SER SEQRES 3 C 115 GLN LEU GLU GLN TRP THR GLN LEU GLN GLU TYR VAL SER SEQRES 4 C 115 VAL THR GLU LEU VAL GLU GLU VAL LEU ASP LYS SER GLY SEQRES 5 C 115 TYR ARG GLU MET LEU LYS ALA GLU ARG THR ILE GLU ALA SEQRES 6 C 115 GLN SER ARG LEU GLU ASN LEU ASP GLU PHE LEU SER VAL SEQRES 7 C 115 THR LYS HIS PHE GLU ASN VAL SER ASP ASP LYS SER LEU SEQRES 8 C 115 ILE ALA PHE LEU THR ASP LEU ALA LEU ILE SER ASP LEU SEQRES 9 C 115 ASP GLU LEU ASP GLY THR GLU GLN ALA ALA GLU SEQRES 1 D 169 GLY ASP ALA VAL MET LEU MET THR LEU HIS ALA ALA LYS SEQRES 2 D 169 GLY LEU GLU PHE PRO VAL VAL PHE LEU ILE GLY MET GLU SEQRES 3 D 169 GLU GLY ILE PHE PRO HIS ASN ARG SER LEU GLU ASP ASP SEQRES 4 D 169 ASP GLU MET GLU GLU GLU ARG ARG LEU ALA TYR VAL GLY SEQRES 5 D 169 ILE THR ARG ALA GLU GLU GLU LEU VAL LEU THR SER ALA SEQRES 6 D 169 GLN MET ARG THR LEU PHE GLY ASN ILE GLN MET ASP PRO SEQRES 7 D 169 PRO SER ARG PHE LEU ASN GLU ILE PRO ALA HIS LEU LEU SEQRES 8 D 169 GLU THR ALA SER ARG ARG GLN ALA GLY ALA SER ARG PRO SEQRES 9 D 169 ALA VAL SER ARG PRO GLN ALA SER GLY ALA VAL GLY SER SEQRES 10 D 169 TRP LYS VAL GLY ASP ARG ALA ASN HIS ARG LYS TRP GLY SEQRES 11 D 169 ILE GLY THR VAL VAL SER VAL ARG GLY GLY GLY ASP ASP SEQRES 12 D 169 GLN GLU LEU ASP ILE ALA PHE PRO SER PRO ILE GLY ILE SEQRES 13 D 169 LYS ARG LEU LEU ALA LYS PHE ALA PRO ILE GLU LYS VAL HET ATP A 700 31 HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE FORMUL 5 ATP C10 H16 N5 O13 P3 FORMUL 6 HOH *94(H2 O) HELIX 1 1 PHE A 3 LEU A 9 1 7 HELIX 2 2 LYS A 14 ARG A 21 1 8 HELIX 3 3 LYS A 37 ALA A 50 1 14 HELIX 4 4 PRO A 56 ASN A 58 5 3 HELIX 5 5 ASN A 66 ASP A 86 1 21 HELIX 6 6 PHE A 92 ILE A 107 1 16 HELIX 7 7 ASP A 120 LYS A 130 1 11 HELIX 8 8 PRO A 141 GLU A 154 1 14 HELIX 9 9 PRO A 158 PHE A 161 1 4 HELIX 10 10 GLU B 170 ARG B 186 1 17 HELIX 11 11 ASP B 193 ARG B 205 5 13 HELIX 12 12 PRO B 207 LYS B 216 1 10 HELIX 13 13 TYR B 225 ASP B 227 5 3 HELIX 14 14 ARG B 230 ALA B 240 1 11 HELIX 15 15 ALA B 252 GLN B 254 5 3 HELIX 16 16 ARG B 258 ARG B 260 5 3 HELIX 17 17 ILE B 264 ASP B 273 5 10 HELIX 18 18 LYS B 290 HIS B 302 1 13 HELIX 19 19 GLU B 329 VAL B 344 1 16 HELIX 20 20 TYR B 351 ASP B 353 5 3 HELIX 21 21 ASN B 361 LYS B 373 5 13 HELIX 22 22 PHE B 386 ASP B 388 5 3 HELIX 23 23 LYS B 390 ALA B 403 1 14 HELIX 24 24 ASP B 408 ILE B 414 1 7 HELIX 25 25 PHE C 442 GLY C 446 1 5 HELIX 26 26 LEU C 448 ILE C 451 1 4 HELIX 27 27 LYS C 456 GLU C 476 1 21 HELIX 28 28 VAL C 480 LYS C 490 1 11 HELIX 29 29 TYR C 493 GLU C 500 1 8 HELIX 30 30 ILE C 503 VAL C 525 1 23 HELIX 31 31 LEU C 531 ALA C 539 1 9 HELIX 32 32 LEU D 564 ALA D 567 5 4 HELIX 33 33 ASN D 588 GLU D 592 1 5 HELIX 34 34 ASP D 594 ARG D 610 1 17 HELIX 35 35 ARG D 636 ASN D 639 5 4 HELIX 36 36 ALA D 643 LEU D 645 5 3 SHEET 1 A 2 LEU A 60 THR A 63 0 SHEET 2 A 2 TRP A 88 THR A 91 1 N TRP A 88 O ALA A 61 SHEET 1 B 2 ILE B 220 ILE B 222 0 SHEET 2 B 2 ILE B 246 ALA B 248 1 N CYS B 247 O ILE B 220 SHEET 1 C 2 VAL D 574 LEU D 577 0 SHEET 2 C 2 GLU D 614 LEU D 617 1 N GLU D 614 O VAL D 575 SHEET 1 D 2 ARG D 623 LEU D 625 0 SHEET 2 D 2 ASN D 628 GLN D 630 -1 N GLN D 630 O ARG D 623 CISPEP 1 VAL B 417 PRO B 418 0 -18.48 CISPEP 2 PHE D 585 PRO D 586 0 8.35 SITE 1 AC1 16 HIS A 11 LEU A 12 ASN A 13 GLN A 16 SITE 2 AC1 16 ALA A 33 GLY A 34 GLY A 36 THR A 38 SITE 3 AC1 16 ARG A 39 GLN B 254 TYR B 286 ARG B 287 SITE 4 AC1 16 HOH B 791 GLY D 569 GLU D 571 ARG D 610 CRYST1 138.936 138.936 111.642 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007197 0.004155 0.000000 0.00000 SCALE2 0.000000 0.008311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008957 0.00000